BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0292.p (488 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 496 e-140 DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 435 e-121 CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 368 e-101 CT708 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family... 358 2e-98 lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 350 6e-96 CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 348 2e-95 FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 345 2e-94 CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 344 3e-94 all4900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami... 328 1e-89 MT2161 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 famil... 324 2e-88 >PA0799 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Pae Pseudomonas aeruginosa Length = 663 Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust. Identities = 266/479 (55%), Positives = 337/479 (70%), Gaps = 8/479 (1%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPV 63 P GL LR YQ G++WMQ LR G+LADDMGLGKT Q LAHVL+EKQAGRLD P Sbjct: 185 PQGLRAELRPYQLEGLSWMQTLRELDSGGVLADDMGLGKTLQSLAHVLLEKQAGRLDTPA 244 Query: 64 LVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLD 123 LVV PTSL+ NW EA R PDLRVL LHG R + F+ + + DLVLT+Y LL RD Sbjct: 245 LVVMPTSLIPNWLDEAERFAPDLRVLALHGAGRRRDFARI--DEHDLVLTTYALLPRDAA 302 Query: 124 QLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHFLM 183 +L +R+H+L+LDEAQ +KNA +++A AAR L ARHRLC+TGTPLENHLGELWS FHFLM Sbjct: 303 ELGKRRFHLLILDEAQNIKNATTKAAVAARELAARHRLCLTGTPLENHLGELWSLFHFLM 362 Query: 184 PGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIERL 243 PG+LGDAR FA+ +R PIE+ G R LA R+RPF+LRR K+ V ELPP+SE + + Sbjct: 363 PGWLGDARQFAQDYRTPIEKHGDEARLSHLAARLRPFLLRRTKEQVASELPPKSEFTQFV 422 Query: 244 PLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQ---- 299 L QRELYE+VR+A D++VR + RRGL S++ +++ALLKLRQVCCD LL++ Sbjct: 423 ELSEAQRELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDG 482 Query: 300 GRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGET 359 R + L K+ +L D L L+AEGRR+L+FSQFT ML LI L + Y++LTGET Sbjct: 483 ARSGRALSSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGET 542 Query: 360 EPAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHR 419 R + FQ + P+ L+SLKAGGVGLNLTAADTV+ DPWWNPAVE QA RA+R Sbjct: 543 R--DRRAPVQRFQSGKVPVFLISLKAGGVGLNLTAADTVIHYDPWWNPAVENQASDRAYR 600 Query: 420 LGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPL 478 +GQ + VFVY+L+ G++EE++ LQ K+ALA+G+ + K E ++ AL APL Sbjct: 601 IGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDGWKLDEADIDALFAPL 659 >DR1259 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Dra Deinococcus radiodurans Length = 600 Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/423 (54%), Positives = 300/423 (70%), Gaps = 6/423 (1%) Query: 42 KTAQVLAHVLIEKQAGRLDLPVLVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFS 101 T Q LAH+L EK+ GR D P LV+APTS++ NWQ EA R TPDL+VL+LHG++R F Sbjct: 157 NTLQTLAHLLKEKEEGRADRPSLVIAPTSVIGNWQAEAARFTPDLKVLVLHGKDRHADFE 216 Query: 102 ALASGQVDLVLTSYPLLWRDLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRL 161 + D+VLT+YPLL RD+D+L +H+++LDEAQ +KN + +A AA L ARHRL Sbjct: 217 KIP--HADVVLTTYPLLPRDIDELRQHEYHLVILDEAQNIKNNKTAAAKAAGSLGARHRL 274 Query: 162 CMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFI 221 +TGTPLENHLGELWSQF+FL PG L D ++F +L+R PIE++G T R L+ RVRPFI Sbjct: 275 ALTGTPLENHLGELWSQFNFLAPGLLHDEKTFQKLYRTPIEKRGDTARQAALSARVRPFI 334 Query: 222 LRRRKQDVLQELPPRSEIIERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVM 281 LRR K+DV +ELPP++EI R+ L+G QR+LYE+VR+ +VR L RGL S + ++ Sbjct: 335 LRREKRDVARELPPKTEIPVRVTLEGDQRDLYETVRVTMQSRVREELAARGLARSTIAIL 394 Query: 282 DALLKLRQVCCDPYLLKQGRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLI 341 DALLKLRQ DP L+K + AK+DWL LP +V EGRR+L+FS F +L + Sbjct: 395 DALLKLRQAVTDPRLVKLEAAREVQGNAKLDWLETNLPQMVEEGRRVLIFSGFATLLGHL 454 Query: 342 AAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLV 401 L+ +PY +TG+T+ R I FQ +T + L++LKAGGVGLNLTAADTV+ Sbjct: 455 EEFLKREGIPYSKITGQTKD--RQKQIDAFQAGETHVFLITLKAGGVGLNLTAADTVIHY 512 Query: 402 DPWWNPAVEEQAIARAHRLGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGML--GRD 459 DPWWNPA E+QA RA+R+GQ + VFVYKL+ GS+EER+L+LQARK+ALA G+L G Sbjct: 513 DPWWNPAAEDQATDRAYRIGQDKPVFVYKLIAAGSVEERILDLQARKAALARGVLDGGLT 572 Query: 460 DAT 462 DAT Sbjct: 573 DAT 575 >CPn0849 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cpn Chlamydophila pneumoniae CWL029 Length = 1166 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/479 (42%), Positives = 289/479 (60%), Gaps = 16/479 (3%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVL---IEKQAGRLD 60 P + TLR YQ GV W++ LR L GILADDMGLGKT Q + V +EK +G Sbjct: 695 PQQIQATLRSYQTEGVHWLERLRKMHLNGILADDMGLGKTLQAIIAVTQSKLEKGSG--- 751 Query: 61 LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHG--QERAQHFSALASGQVDLVLTSYPLL 118 L+V PTSL++NW++E R+ P+ R L++ G +R + +ALA D+ +TSY LL Sbjct: 752 -CSLIVCPTSLVYNWKEEFRKFNPEFRTLVIDGVPSQRRKQLTALADR--DVAITSYNLL 808 Query: 119 WRDLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQ 178 +D++ R+ +VLDEA +KN +R+A + + +Q+ HRL +TGTP+EN L ELWS Sbjct: 809 QKDVELYKSFRFDYVVLDEAHHIKNRTTRNAKSVKMIQSDHRLILTGTPIENSLEELWSL 868 Query: 179 FHFLMPGFLGDARSFARLWRKPIEEQGQTVRARL-LAQRVRPFILRRRKQDVLQELPPRS 237 F FLMPG L F + + G + L ++V PFILRR K+DVL++LPP S Sbjct: 869 FDFLMPGLLSSYDRFVGKYIRTGNYMGNKADNMVALKKKVSPFILRRMKEDVLKDLPPVS 928 Query: 238 EIIERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLL 297 EI+ L Q+ELY+S +A +++ R +++ G + V+ L +L+Q+CC P + Sbjct: 929 EILYHCHLTESQKELYQSYAASAKQELSRLVKQEGFERIHIHVLATLTRLKQICCHPAIF 988 Query: 298 KQGRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTG 357 + P+ + AK D L D L +LV G + +VFSQ+T ML +I LE +P++ L G Sbjct: 989 AKD-APEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKMLGIIKKDLESRGIPFVYLDG 1047 Query: 358 ETEPAARADVIAGFQQEQTPLM-LVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIAR 416 T+ R D++ F ++ + L+ L+SLKAGG GLNL ADTV+ D WWNPAVE QA R Sbjct: 1048 STK--NRLDLVNQFNEDPSLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVENQATDR 1105 Query: 417 AHRLGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALL 475 HR+GQ R V YKLV +IEE++L LQ RK +L + ++ DD K EE+ LL Sbjct: 1106 VHRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVINSDDEVVSKLTWEEVLELL 1164 >CT708 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Ctr Chlamydia trachomatis Length = 1163 Score = 358 bits (918), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 199/479 (41%), Positives = 285/479 (59%), Gaps = 16/479 (3%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVL---IEKQAGRLD 60 P + TLR YQ+ GV W++ LR L GILADDMGLGKT Q + V +EK G Sbjct: 692 PSQIQATLRGYQKEGVHWLERLRKMHLNGILADDMGLGKTLQTIIAVTQSRLEKGGG--- 748 Query: 61 LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHG--QERAQHFSALASGQVDLVLTSYPLL 118 L++ PTSL++NW++E R+ P+ + L++ G +R + ++L + D+ +TSY LL Sbjct: 749 -CSLIICPTSLVYNWKEEFRKFNPEFKTLVVDGIPSQRRKQLASLE--EYDVAITSYNLL 805 Query: 119 WRDLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQ 178 +D+D + +VLDEA +KN +R+A + + ++A HRL +TGTP+EN L ELWS Sbjct: 806 QKDIDIYKDFLFDYVVLDEAHHIKNRTTRNAKSVKMIRACHRLILTGTPIENSLEELWSL 865 Query: 179 FHFLMPGFLGDARSFARLWRKPIEEQGQTV-RARLLAQRVRPFILRRRKQDVLQELPPRS 237 F FLMPG L F + + G L ++V PFILRR K+DVL++LPP S Sbjct: 866 FDFLMPGLLSSYDRFVGKYIRIGNYMGNKADNVEALRRKVAPFILRRMKEDVLEDLPPVS 925 Query: 238 EIIERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLL 297 EI+ L QRELY+S +A +++ R +++ G + V+ L +L+Q+CC P + Sbjct: 926 EILYHCHLTESQRELYQSYAASARQELSRLVKQEGFERIHIHVLATLTRLKQICCHPAIF 985 Query: 298 KQGRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTG 357 + P+ + AK D L D L +LV G + +VFSQ+T ML +I LE +P++ L G Sbjct: 986 AKD-TPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKMLGIIRQDLEAKGIPFVYLDG 1044 Query: 358 ETEPAARADVIAGFQQEQTPLM-LVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIAR 416 T+ R +++ F ++ L+ LVSLKAGG GLNL ADTV+ D WWNPAVE QA R Sbjct: 1045 STK--NRLEIVQQFNEDPGLLVFLVSLKAGGTGLNLVGADTVIHYDMWWNPAVENQATDR 1102 Query: 417 AHRLGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALL 475 HR+GQ R V YKLV +IEE++L LQ RK L + ++ DD K EE+ LL Sbjct: 1103 VHRIGQSRSVSSYKLVTLNTIEEKILSLQNRKKGLVKKVINSDDEVVSKLTWEEVLELL 1161 >lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Lin Listeria innocua Length = 1072 Score = 350 bits (897), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 189/476 (39%), Positives = 275/476 (57%), Gaps = 25/476 (5%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPV 63 P GL LRDYQ G WM+ L + L GILADDMGLGKT Q ++ + E + PV Sbjct: 609 PKGLKAELRDYQLTGFEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEENPNLKPV 668 Query: 64 LVVAPTSLLFNWQQEARRITPDLRVLLLHG--QERAQHFSALASGQVDLVLTSYPLLWRD 121 L+V P SLL+NWQ E + P++ V +LHG Q R + G V L+ SYP L +D Sbjct: 669 LIVTPASLLYNWQSELEKFAPEIPVTVLHGTKQARMAEMEEIKHGHVYLI--SYPSLRQD 726 Query: 122 LDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHF 181 + + +++DE+Q +KN ++++ A R L+ H ++GTPLEN + ELW+ F Sbjct: 727 IIHFADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQT 786 Query: 182 LMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIE 241 LMPGF R F + P E +A+ +RPF+LRR KQDV++ELP + E Sbjct: 787 LMPGFFPSLRKFKEI---PYEN---------IAKMIRPFLLRRLKQDVVKELPDKIETNL 834 Query: 242 RLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQ--VTVMDALLKLRQVCCDPYLLKQ 299 L Q+ +Y +A ++++ LE S+ + ++ L +LRQ+CCDP L + Sbjct: 835 YSELTDEQKTIY----LAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVE 890 Query: 300 GRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGET 359 E K+ L DT+ G+RIL+FSQFTGML +I +LE P + G+T Sbjct: 891 NYQG---ESGKLLQLFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKT 947 Query: 360 EPAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHR 419 R D++ F + + + L+SLKAGG GLNL ADTV+L D WWNPAVEEQA RAHR Sbjct: 948 PAKTRLDMVNAFNEGENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHR 1007 Query: 420 LGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALL 475 +GQ+R V V++++ +G+IEER+ +LQ +K AL + ++ + K EE++ +L Sbjct: 1008 IGQKRVVQVFRMITKGTIEERIFDLQKKKQALVDELIQPGEQMLGKLNTEEIKQIL 1063 >CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cac Clostridium acetobutylicum Length = 1052 Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/454 (37%), Positives = 269/454 (59%), Gaps = 6/454 (1%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPV 63 P+ +RDYQ+ G W + L G+ GILAD+MGLGKT Q +A I G + + Sbjct: 582 PNEFNSIMRDYQKRGFRWFKSLDHFGVGGILADEMGLGKTLQTIA--FISSGTGHKETSI 639 Query: 64 LVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLD 123 ++V PTS+++NW++E + + +L+ L++ G +R + + D+++TSY L+ D++ Sbjct: 640 IIV-PTSIVYNWKEEIEKFSKNLKTLIISGTKRERAEAIGEYYNYDVLITSYSLIRMDIE 698 Query: 124 QLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHFLM 183 + ++ +LDEAQ +KN S A ++++A++ +TGTP+EN L ELWS F F+M Sbjct: 699 EYSKIKFKYCILDEAQYIKNKNSLITKAVKKIRAKNCFALTGTPIENCLSELWSIFDFIM 758 Query: 184 PGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIERL 243 PG+L F + PI ++ L + + PFILRR K+ V++ELP + E + Sbjct: 759 PGYLLSYSKFVNKYENPIIKEKDKRALYELNRHIEPFILRRLKESVVKELPSKVEHKILI 818 Query: 244 PLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMP 303 + +Q+E+Y + A +++ R++E +G+ S+ + L +LRQ+C +P + + Sbjct: 819 EMSQKQKEVYYAYLKNAREKIYRSIEEKGINNSKFIIFSLLTRLRQICSNPRTVVENYNG 878 Query: 304 KGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAA 363 K AK+D L DT+ +A RILVFSQFT +LK I +L + + L G T+ Sbjct: 879 KN---AKMDVLMDTIKTSIANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNTKMKD 935 Query: 364 RADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQ 423 R + F + + + L+SLKAGG GLNLT AD VV DPWWNPAVE QA RAHR+GQ+ Sbjct: 936 RFQLADEFNKGKGEVFLISLKAGGTGLNLTGADIVVHFDPWWNPAVENQASDRAHRIGQK 995 Query: 424 RQVFVYKLVIEGSIEERLLELQARKSALAEGMLG 457 + V + KL+ G+IEE++ +LQ K + + +LG Sbjct: 996 KNVEIIKLITRGTIEEKIYKLQQEKKKMVDNVLG 1029 >FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Fnu Fusobacterium nucleatum Length = 1089 Score = 345 bits (884), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 173/472 (36%), Positives = 276/472 (58%), Gaps = 11/472 (2%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPV 63 P LR+YQ GV WM LR L GILADDMGLGKT QV+ ++ ++ + + Sbjct: 626 PSKYKKILREYQIVGVEWMLKLRAMNLGGILADDMGLGKTLQVITYL----ESVKRERAC 681 Query: 64 LVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLD 123 L+V P SL+ NW+ E + + L ++G +R L++ + ++V+TSY L RD+D Sbjct: 682 LIVTPASLILNWENEFNKFNSSVLTLSIYG-DRKNREVLLSNLKNEVVITSYDYLKRDMD 740 Query: 124 QLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHFLM 183 + ++LDEAQ +KN ++ A A +++ ++ +L +TGTPLEN L E+WS F FLM Sbjct: 741 LYENIDFDTIILDEAQYIKNHKTKVAQAVKKINSKFKLALTGTPLENSLAEIWSIFDFLM 800 Query: 184 PGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIERL 243 G+L + F + + K I Q + L V PFILRR K+DVL+ELP + E + Sbjct: 801 NGYLFNYDYFYKNYEKAIVLQTEKRVTERLKNMVEPFILRRLKKDVLKELPEKIEETYYV 860 Query: 244 PLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMP 303 + +++LY++ + ++ + + ++ + +++ V+ L KLRQ+C DP LL + Sbjct: 861 DMNQEEKKLYQANLIKINETLAQNID---VNTNKIEVLAMLTKLRQICIDPRLLYEDVSS 917 Query: 304 KGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAA 363 +KI+ + + + ++IL+FS FT +L L+A + + L +PY MLTGET Sbjct: 918 SS---SKINACIELIEKSIENNQKILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVK 974 Query: 364 RADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQ 423 R +++ FQ E PL L+SLKAGG GLNLT A V+ +DPWWN + + QA RAHR+GQ+ Sbjct: 975 RKEMVENFQNEAVPLFLISLKAGGTGLNLTKASVVIHLDPWWNISAQNQATDRAHRIGQE 1034 Query: 424 RQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALL 475 V V+ L+ + +IEE++L LQ++K L++ + + +E+L L Sbjct: 1035 DTVQVFNLITKNTIEEKILNLQSKKKELSDIFVENSKGSFSSLTKEQLLDLF 1086 >CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Cac Clostridium acetobutylicum Length = 1077 Score = 344 bits (882), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 170/456 (37%), Positives = 272/456 (59%), Gaps = 10/456 (2%) Query: 12 RDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPVLVVAPTSL 71 R+YQ+ G W++ L G GIL D+MGLGKT QV++ +L G+ L+V PTSL Sbjct: 620 REYQKKGYNWLKTLDYFGFGGILGDEMGLGKTFQVISFLL--SSPGK---KSLIVVPTSL 674 Query: 72 LFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLDQLLPQRWH 131 ++NW QE R P ++V G ++ + + +++T+Y LL RDL + + Sbjct: 675 VYNWIQEFERFAPSIKVAASVGTKKEREVIIENLNEFQVIITTYNLLKRDLSSYMALEFD 734 Query: 132 MLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDAR 191 +LDEAQ +KN S++A + +++ A +R ++GTP+EN + ELWS F F+MP +L D Sbjct: 735 YCILDEAQNIKNPHSQNAISVKKINAVNRFALSGTPMENSVMELWSIFDFIMPEYLYDED 794 Query: 192 SFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIERLPLQGRQRE 251 F+ + K ++E+ + L + ++PFILRR+K++V++ELP + E I + ++ +Q++ Sbjct: 795 RFSVRYYKKLKEEPAVIED--LNRLIKPFILRRKKKEVVKELPNKIEKIVAVDMESKQKK 852 Query: 252 LYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMPKGLERAKI 311 +Y + A + + +E S++ ++ + +LRQ+C DP ++ + AKI Sbjct: 853 VYSTYAKYAVSLIEKRVEYDEFNKSKIEILSYITRLRQICLDPSVVMEDYTGGS---AKI 909 Query: 312 DWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAGF 371 + L + L + EG +ILVFSQFT +LK IA + ++ Y L G R +++ F Sbjct: 910 NALIELLNHSIDEGHKILVFSQFTSVLKNIAERFREEKIKYSYLDGSINSKNRMNMVQDF 969 Query: 372 QQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQRQVFVYKL 431 + + L+SLKAGG GLNLT+AD V+ DPWWNPAVEEQA RAHR+GQ+ V V KL Sbjct: 970 NEGNNSVFLISLKAGGTGLNLTSADVVIHFDPWWNPAVEEQATDRAHRIGQKNIVEVIKL 1029 Query: 432 VIEGSIEERLLELQARKSALAEGMLGRDDATTVKFG 467 V +G+IEE+++ LQ K L + +L D +T+ F Sbjct: 1030 VAKGTIEEKIIRLQEEKKRLVDSLLSEDLSTSEVFS 1065 >all4900 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Nos Nostoc sp. PCC 7120 Length = 869 Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 189/481 (39%), Positives = 272/481 (56%), Gaps = 19/481 (3%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPV 63 P G LRDYQ G W+ L G+ LAD MGLGKT Q LA +L G P Sbjct: 405 PSTFGAELRDYQMDGFCWLARLAHWGVGACLADQMGLGKTVQALAVILRNAHEG----PS 460 Query: 64 LVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRD-L 122 L++APTS+ NW EA++ P L ++ G R + L +D+++ SY LL ++ + Sbjct: 461 LIIAPTSVCMNWVSEAQKFAPTLNIIQFTGANRQKLLDGLQP--LDMLVCSYGLLQQEEV 518 Query: 123 DQLLPQ-RWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHF 181 Q+L +W +VLDEAQ +KN ++ + AA L+A +L TGTP+ENHLGELW+ F F Sbjct: 519 AQMLSGVQWQTIVLDEAQAIKNMTTKRSQAAMNLKANFKLLTTGTPIENHLGELWNLFRF 578 Query: 182 LMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIE 241 + PG LG SF + + PIE+ L + ++PF+LRR K VL+ELP R+EI+ Sbjct: 579 INPGLLGSFESFNQRFAIPIEKYQDKQARNKLKKLIQPFLLRRTKNQVLEELPSRTEILL 638 Query: 242 RLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGR 301 + L ++ YE++R A ++ + G + V+ ++KLR+ CC+P L+ Sbjct: 639 HVELSREEKAFYEALRRQAISKLSDS--NAEAGNKHLQVLAEIMKLRRACCNPSLV---- 692 Query: 302 MPKG-LERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETE 360 MP L +K+ + L L+ + LVFSQF L +I L+ + Y L G T Sbjct: 693 MPDTELSSSKLQLFGEVLGELLENRHKALVFSQFVDHLHIIRNYLDKQGINYQYLDGSTS 752 Query: 361 PAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRL 420 + R + FQ + L+SLKAGG GLNLTAAD V+ DPWWNPAVE+QA RAHR+ Sbjct: 753 VSERKKRVDAFQAGNGDVFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRI 812 Query: 421 GQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPLGA 480 GQQR V +Y+LV + +IEE+++EL K LA+ +L D + G+ +ALL + Sbjct: 813 GQQRPVTIYRLVAKDTIEEKIVELHHHKRDLADSLLEGADMS----GKISTEALLQLISE 868 Query: 481 G 481 G Sbjct: 869 G 869 >MT2161 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family MtC Mycobacterium tuberculosis CDC1551 Length = 954 Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 206/487 (42%), Positives = 280/487 (57%), Gaps = 21/487 (4%) Query: 4 PDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIE---KQAGRLD 60 PDG TLR YQ+ G+AW+ +L + GL LADDMGLGKT Q+LA +E + R Sbjct: 467 PDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQDRGV 526 Query: 61 LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASG--QVDLVLTSYPLL 118 P L++ P SL+ NWQQEA R P+LRV HG R H AL + DLV+++Y Sbjct: 527 GPTLLLCPMSLVGNWQQEAARFAPNLRVYAHHGGARL-HGEALRDHLERTDLVVSTYTTA 585 Query: 119 WRDLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQ 178 RD+D+L W+ +VLDEAQ VKN+ SR+A A RRL+A HR+ +TGTP+EN L ELWS Sbjct: 586 TRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSI 645 Query: 179 FHFLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQD--VLQELPPR 236 FL PG LG + F + PIE G T A L RP+ILRR K D ++ +LP + Sbjct: 646 MDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTRPYILRRLKTDPAIIDDLPEK 705 Query: 237 SEIIERLPLQGRQRELYESV--RMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDP 294 EI + L Q LY++V M + +ERRG V+ A+ KL+QVC P Sbjct: 706 IEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRG------NVLAAMAKLKQVCNHP 759 Query: 295 YLLKQGRMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKL----IAAQLEPLQL 350 L R P G K+ L + L ++AEG R+L F+QFT +L +AA+ Sbjct: 760 AQLLHDRSPVGRRSGKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAAR 819 Query: 351 PYLMLTGETEPAARADVIAGFQQ-EQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAV 409 L G T R +++A FQ + P+ L+SLKAGG GLNLTAA+ VV +D WWNPAV Sbjct: 820 DIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNPAV 879 Query: 410 EEQAIARAHRLGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEE 469 E QA RA R+GQ+R V V K + G++EE++ E+ K ALA+ ++ + + Sbjct: 880 ENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELSTR 939 Query: 470 ELQALLA 476 +L+ + A Sbjct: 940 DLREVFA 946