BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0224.p (347 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2758 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 244 2e-64 PA4989 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 122 2e-27 AGc2231 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 117 5e-26 SMa1782 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 108 2e-23 RSp1514 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 108 2e-23 PA2879 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 103 8e-22 mll2420 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 102 9e-22 CC0790 Non COG 101 2e-21 SMa0353 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 93 9e-19 PM0403 [K] COG0583 Transcriptional regulator Pmu Pasteurella mul... 91 4e-18 >PA2758 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 133/290 (45%), Positives = 179/290 (61%) Query: 47 MAFSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 106 M FSSD + +FLAVLD GSFS AAR LGRVPS+VSM I+ LEAEL LF+RT R+ARPT Sbjct: 1 MNFSSDTIELFLAVLDRGSFSGAARALGRVPSAVSMGIANLEAELGFALFERTHREARPT 60 Query: 107 DMARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFP 166 +ARAL P AR++A L QL HAL + QGLE +L+L V ++ S L L+E +P Sbjct: 61 ALARALAPQARMIAEQLAQLQVHALELSQGLESRLSLGVVADIDSGRLFGALRTLSERYP 120 Query: 167 SLEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALR 226 L+VEVLS+ Q DA+ +L+ L F + N +E FQ +E LVA I+P HPAL+ Sbjct: 121 LLDVEVLSAAQDDALALLHGGRISLCFGFAGISVNPQERFQYVGAESLVATISPRHPALQ 180 Query: 227 RKKRKLRYEDLYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWAYLP 286 + + L E+L ++RQI VAS D ++D R +A WRTD+ L +V G+GW P Sbjct: 181 KPGQALYLEELVNVRQILVASCDLPLADTRPLIAGACWRTDSLGTALEMVEAGIGWGNFP 240 Query: 287 QSLVQAQIEAGALTVIDFDNISNQQRQWVDVVWCKDRPLGLGAQRFVALM 336 S V + G L +DF N N+ + V +W K++PL AQ V ++ Sbjct: 241 LSRVAPLLATGRLVRLDFRNTKNELKLPVHAIWLKNQPLRKAAQELVGML 290 >PA4989 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 294 Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 8/248 (3%) Query: 47 MAFSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTA-RDARP 105 M ++ + +R+F++V + SFSAAAREL RV S+VS I+ LEA+L + LF+R++ R R Sbjct: 1 MQWNLEQIRLFVSVAERQSFSAAARELKRVQSAVSNGIALLEADLGVTLFERSSGRQPRL 60 Query: 106 TDMARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEF 165 TD R L +AR + +L AL + +G E +L LA + P L LA+ F Sbjct: 61 TDEGRVLLAEAREVLRQCERLQGRALGLARGEEPRLRLAQDEAMPYQPVLDSLEALAQRF 120 Query: 166 PSLEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHP-- 223 PSLEV+V S Q D R L ++ A L L+F + + S +V V HP Sbjct: 121 PSLEVQVSSGGQGDVTRRLLEEQADLGLLFHHERMPESLERRRLGSVEMVTVCGAGHPLA 180 Query: 224 ALRRKKRKLRYEDLYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWA 283 L+R R+ +L RQ+ + + + ++ Q+WR D+ + L+ LGWA Sbjct: 181 GLQRVSRR----ELAQHRQLLIVPQQSGYPGGE-QISPQVWRLDSFYSMAELLMRNLGWA 235 Query: 284 YLPQSLVQ 291 +LP+ +VQ Sbjct: 236 WLPRHVVQ 243 >AGc2231 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 322 Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 133/256 (51%), Gaps = 3/256 (1%) Query: 52 DNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTA-RDARPTDMAR 110 D ++VFL V ++GSFSAAAR L R S VS TI+ LEA+L++ LF+R R + TD R Sbjct: 8 DQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQPKLTDEGR 67 Query: 111 ALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSLEV 170 A+ DAR + + L+++ A A + QGLE +L++A++ + + L E+FP++ + Sbjct: 68 AMLEDARRIVAGLQEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFREQFPTVTL 127 Query: 171 EVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALRRKKR 230 + M M+ A + + +D ++ ++ V+A DHP L + +R Sbjct: 128 SLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDDLVMEKVGHSFMLPVVAADHP-LAQIER 186 Query: 231 KLRYEDLYDIRQIAVASRDARVSDPRF-FLARQIWRTDNHLATLSLVREGLGWAYLPQSL 289 L D+ + Q+ V F L+ + WR + L++ GLGW LP S+ Sbjct: 187 PLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWGGLPASI 246 Query: 290 VQAQIEAGALTVIDFD 305 V+ + G+L ++ + Sbjct: 247 VRNDLTNGSLKALELE 262 >SMa1782 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 297 Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 7/282 (2%) Query: 47 MAFSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 106 M S + + F+A + GSFSAA R L + S+VS +S LE +L L+LF R R+ T Sbjct: 1 MTVSMEQLEAFVAAAEHGSFSAAGRALRKAQSAVSTQVSNLEEDLGLELFSRQGRNPTLT 60 Query: 107 DMARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFP 166 L +ARL+ L A + +E++L +A+ + A A FP Sbjct: 61 AAGERLLSEARLILDRREHLIGVAASFEAHVEKRLVVAIDELYPEHALGELFAEFAVHFP 120 Query: 167 SLEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALR 226 +E+E+L D R++ D A + +++ + F L V +HP Sbjct: 121 HVELELLFPMMEDVSRLVLDGKADIGVMWRQEDLPAELGFHTIGWVQLKLVCGRNHPL-- 178 Query: 227 RKKRKLRYEDLYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWAYLP 286 + +EDL RQI V R + R +A ++W ++H L ++++G+GWA +P Sbjct: 179 -ANAVVGWEDLKRHRQIMVTVRTEGMERHRLRVAAEVWWVESHWVILQILKQGIGWALIP 237 Query: 287 QSLVQAQIEAGALTV--IDFDNISNQQRQWVDVVWCKDRPLG 326 ++ A L + + FD+ ++ +++VW K RP G Sbjct: 238 AHILARSPVAQDLAIPALQFDDGAHPVA--LELVWHKQRPSG 277 >RSp1514 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 294 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 126/273 (46%), Gaps = 19/273 (6%) Query: 64 GSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPTDMARALEPDARLLASTL 123 GSFSAAAR+LG+ S++S I LE +L L LFDR R T+ RA+ R + Sbjct: 18 GSFSAAARKLGKRQSTISEAIGNLEIDLGLTLFDRGTRQPTLTEAGRAMLAQVRRVLEAG 77 Query: 124 RQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSLEVEVLSSPQADAMRM 183 Q+D A + GLE +LTL V+ S + + LA L FP LE+E L + D + + Sbjct: 78 EQMDRQAAQLAGGLEARLTLVVSDTYQSDRYEQTLAALEARFPDLELECLIAEHEDVVDL 137 Query: 184 LYDDTAQLALVFERPAGNDREAFQEFSSEMLVAV-IAPDHPALRRKKRKLRYEDLYDIRQ 242 + D AQ LV +PA S + + + HP R + + DL R+ Sbjct: 138 IRQDRAQFGLVASQPAYPPDIGAATISEPSEIGLFVGRQHPLARHGDVETPHADLRAARE 197 Query: 243 I----AVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWAYLPQSLVQAQIEAGA 298 + VA AR P R+ W +++ L + G GW LP+ +V+ + A Sbjct: 198 LRLNTMVAPGGARTEGPDVGSVRR-WSAPSYIMLLEMAALGYGWTELPRWMVE-RFAADR 255 Query: 299 LTVIDFDNISNQQRQW-----VDVVWCKDRPLG 326 L + + R W VD VW + RPLG Sbjct: 256 LHEV-------RARGWPRRVPVDAVWSRKRPLG 281 >PA2879 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 296 Score = 103 bits (256), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 135/299 (45%), Gaps = 31/299 (10%) Query: 47 MAFSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 106 M S +++ F+ + GSFSAAAR+LG+ S+VS I++LE +L L+LFDR+ R + T Sbjct: 1 MHLSPESLEAFVQAVSLGSFSAAARKLGKSQSTVSEAIARLEIDLGLELFDRSGRQPQLT 60 Query: 107 DMARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFP 166 + R L + +L A + G E ++TLA++ SA + LA L E +P Sbjct: 61 EAGRTLLGRVEEVLGASDRLRRVAALLAGGSEPRVTLALSDTYHSARYEARLAELDERYP 120 Query: 167 SLEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAP------ 220 LE E L + D + + A L L+ +P + E+ VA +A Sbjct: 121 ELEFECLIAEDQDVIAQVSRGRATLGLLAAQP---------HYPPELGVAAVAERAEFGL 171 Query: 221 ----DHP--ALRRKKRKLRYEDLYDIRQI---AVASRDARVSDPRFFLARQIWRTDNHLA 271 DHP L R + DL + R + + A ++D + W N+L Sbjct: 172 FAAVDHPLAGLERVSER----DLSEWRLLRLNTYSETGAAINDGLPSSGGRCWSAPNYLL 227 Query: 272 TLSLVREGLGWAYLPQSLVQAQIEAGALTVIDFDNISNQQRQWVDVVWCKDRPLGLGAQ 330 L + G GWA LP+ LV G L + Q VDVVW + RPLG A Sbjct: 228 LLEMATHGFGWAELPRWLVSGYAN-GRLKELPVSGWPRSQA--VDVVWSRQRPLGPAAN 283 >mll2420 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 318 Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 9/262 (3%) Query: 52 DNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTA-RDARPTDMAR 110 D +++F+AV DSGSFSAA R+L R S +S I+ LEA+L L+LF+R R+ + T++ R Sbjct: 8 DQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREPQLTEIGR 67 Query: 111 ALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSLEV 170 ++ DAR + L+++ + H GLE ++ L+V L S + L +FP++ + Sbjct: 68 SMLEDARRMIGVLQRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEAQFPTVML 127 Query: 171 EVLSSPQADAMRMLYDD--TAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALRRK 228 + ++ ++ D + Q L G+ +V AP HP L Sbjct: 128 RL----HIGSLGLIPDHVVSGQADLGIGGLLGDVDVHLVRIGFMSIVLAAAPSHP-LALL 182 Query: 229 KRKLRYEDLYDIRQIAVASRDARVSDPRF-FLARQIWRTDNHLATLSLVREGLGWAYLPQ 287 + L ED+ + Q+ V + R F A + WR + L+REGLGW LP+ Sbjct: 183 PKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGLPR 242 Query: 288 SLVQAQIEAGALTVIDFDNISN 309 L+ + G L +D + S Sbjct: 243 WLIADDLVNGRLVELDLEPFSE 264 >CC0790 Non COG Length = 299 Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 131/290 (45%), Gaps = 30/290 (10%) Query: 52 DNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARP--TDMA 109 D + V LAV+++G F++AAR L R S +S I+ LEA+L L LFDR A RP T+ Sbjct: 10 DQLNVLLAVVETGGFASAARRLNRANSVISYAIANLEAQLGLVLFDRDAAK-RPVLTEAG 68 Query: 110 RALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSLE 169 + + AR++A + L A A + QGLE ++ L + L +A L E FP++ Sbjct: 69 KVVVAQARVIAGDVASLRAKAKGLTQGLEAEVNLVLDVMLPTARVVDALRAFRETFPTVT 128 Query: 170 VEVLSSPQADAMRMLYDDTAQLALV--FERPAGNDREAFQEFSSEMLVAVIAPDH----- 222 + + +M+ D A L + E G D + S L+ V APDH Sbjct: 129 LRLHVEGLGAVTQMVLDRAATLGVAGPLEVVHGGDELDYIAVGSTRLIPVAAPDHPLAQG 188 Query: 223 ---PALRRKKRKLRYED---LYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLV 276 P R +L D L R AVAS WR + A L+ Sbjct: 189 PNAPGAGRSHTQLVLTDRSRLTQGRDFAVAS-------------AHTWRLADLGAKHLLL 235 Query: 277 REGLGWAYLPQSLVQAQIEAGALTVIDFDNISNQQRQWVDVVWCKDRPLG 326 +EG GW +P+ +V+ + AG LT +D + + + V+ D P G Sbjct: 236 KEGFGWGNMPEPMVRDDLAAGRLTRLDMPD-PKEAIYPLHAVYRTDTPPG 284 >SMa0353 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 304 Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 11/286 (3%) Query: 52 DNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDR-TARDARPTDMAR 110 D +RVF+AV+++GSF+AAAR+L R S +S TI+ LEA+L + LFDR + + + T R Sbjct: 10 DQLRVFIAVVETGSFAAAARKLNRATSVISYTIANLEAQLGVTLFDRLSTKKPQLTLEGR 69 Query: 111 ALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSLEV 170 + +AR +++ + L A +M +G+E ++ LA+ L ++ L +EFPS+ + Sbjct: 70 TVLAEARSVSNGIDNLRAKVKSMLRGIEPEVHLALDVMLPASRVMDALKAFRKEFPSVSL 129 Query: 171 EVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEM--LVAVIAPDHPALRRK 228 + +++ + TA + + P D + LV V APDHP Sbjct: 130 RLYVEALGAVTQIVLNRTATVGI--SGPLDVDVLGLERIGVGFVQLVPVAAPDHPLAGGS 187 Query: 229 KRKLRYEDLYDIRQIAVASRDARVSDPRF-FLARQIWRTDNHLATLSLVREGLGWAYLPQ 287 Q+ + R F + WR + A L++EG+GW +P+ Sbjct: 188 HAPGAARSHI---QLVLTDRSPLTQGHEFAVVGTHTWRLADLGAKHMLLKEGIGWGNMPE 244 Query: 288 SLVQAQIEAGALTVIDFDNISNQQRQWVDVVWCKDRPLGLGAQRFV 333 +V+ + G L +D + + + ++ D P G A RF+ Sbjct: 245 PMVRDDLADGRLVQLDLPDCKGGPYR-LQAIYRTDTPPG-PAGRFL 288 >PM0403 [K] COG0583 Transcriptional regulator Pmu Pasteurella multocida Length = 289 Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 49 FSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPTDM 108 ++ + ++ F+AV ++GS SAAAR+LG+ S+VS ++ LE L+ LFDR+ A T Sbjct: 2 YNLEQLKAFVAVCENGSISAAARKLGKAQSAVSSAVANLEIALNQTLFDRSKNAAHLTSN 61 Query: 109 ARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAEEFPSL 168 AL P + + + + A A+ + E +L++A L K L + FP Sbjct: 62 GAALLPMVKHVLQQIHYFEQKATALSEPQEYRLSIAFEDTLWDEQLTKIFVKLHQRFPHT 121 Query: 169 EVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALRRK 228 ++++ S A+ + + ++++ +D Q + VA AP HP + Sbjct: 122 QLDLQLSTAAEIRSKIEQGELNIGILYQNQVQSDLPV-QLLGQQRFVAAAAPSHPL--SQ 178 Query: 229 KRKLRYEDLYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWAYLPQS 288 ++ DL Q+ R+A ++ ++ Q W+ +++ + LV +G+GWA +P+ Sbjct: 179 LTEVNNADLAHFVQL--IHRNADITP----ISPQYWQINSYYLMMDLVNQGIGWAIMPEQ 232 Query: 289 LV 290 L+ Sbjct: 233 LL 234