BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0210.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2696 [K] COG2207 AraC-type DNA-binding domain-containing prote... 217 2e-56 SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing prot... 203 4e-52 SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing prot... 135 1e-31 mll0489 [K] COG2207 AraC-type DNA-binding domain-containing prot... 133 4e-31 SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing prot... 106 8e-23 SMc01610 [K] COG2207 AraC-type DNA-binding domain-containing pro... 102 1e-21 AGc720 [K] COG2207 AraC-type DNA-binding domain-containing prote... 98 2e-20 RSp1115 [K] COG2207 AraC-type DNA-binding domain-containing prot... 93 6e-19 mlr1270 [K] COG2207 AraC-type DNA-binding domain-containing prot... 93 8e-19 SMb20859 [K] COG2207 AraC-type DNA-binding domain-containing pro... 91 2e-18 >PA2696 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 297 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/279 (40%), Positives = 168/279 (60%), Gaps = 15/279 (5%) Query: 17 GMALVHAAQAQPQARVPAPVIEIPGADAWSVIVQLQDFREHRLWRGQRLVHAGAHRRGEV 76 G AL+ ++A P P VI IP AD++SVIVQL+DF HRLW G +LV G H R + Sbjct: 23 GYALIRNSEATPD---PDKVIHIPCADSFSVIVQLRDFNSHRLWNGNKLVFDGGHPRKSI 79 Query: 77 AVTDLREQWRCQHLSGYENVRLLVPRTAMEE-LGEEIARPVGELRPVQGAADPVLFHLAQ 135 ++ L ++ +CQH + Y+NVR ++PR +++E L EE R E + G DPV++HLA Sbjct: 80 SIAYLGDEIKCQHRTTYDNVRFMLPRASIKEFLYEEGQRASAEPERIIGVDDPVVYHLAL 139 Query: 136 AMLPAARTAGAAGAASVPSVASETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQ 195 A+LP+ AG LF++ +MLAL TH+ R+ + P LA WQ Sbjct: 140 ALLPSFARAGE----------RNELFIEQVMLALLTHVQDRFAS-TQVPVCTGKGLAPWQ 188 Query: 196 EARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLL 255 R ++ + HLA+ +S+A +A + GLSR++F++AFK S G+SPH WL + R+ A L+ Sbjct: 189 LRRAKELIAGHLAEGVSVARLAEECGLSRSYFTKAFKCSTGVSPHEWLMRMRVDRAKELM 248 Query: 256 HEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLR 294 + ++ I + CGFSDQ HFSR+F ++ G P+ W R Sbjct: 249 LGSDEPLSQIGVACGFSDQPHFSRIFLRLAGASPSTWRR 287 >SMa1823 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 13/259 (5%) Query: 39 IPGADAWSVIVQLQDFREHRLWRGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRL 98 IP DA+ VIVQL+DF HRLWR LV+ G H + +A+TDLR+QW+C HLS ++N+R Sbjct: 44 IPCTDAFGVIVQLRDFDTHRLWRRGELVYEGGHAKASLAITDLRDQWQCHHLSPFDNIRF 103 Query: 99 LVPRTAMEELGEEIARP-VGELRPVQGAADPVLFHLAQAMLPAARTAGAAGAASVPSVAS 157 +P + M EE+ R L VQG DPV+ LAQA+LP+ PS A+ Sbjct: 104 HIPFSRMRAFAEEVGRSEYMALACVQGRIDPVMHGLAQALLPSLDD---------PSDAN 154 Query: 158 ETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIA 217 LFL+ + LA+ HL Q YG P G L+ WQE DF+ SH + S+ ++A Sbjct: 155 P-LFLEQINLAMLAHLSQTYGGLHF-PVDKKGTLSPWQERLATDFLASHFNKPFSIGDLA 212 Query: 218 AQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHF 277 ++ GLSR++F++AFK+SFG +P WL + R+A +L S+ +++ CGF+DQSH Sbjct: 213 SRCGLSRSYFNKAFKESFGRTPSKWLTEYRVARVKEMLLL-DLSIAEVSINCGFADQSHM 271 Query: 278 SRVFKQVQGMGPAAWLRRR 296 +RVF + G PA + R+ Sbjct: 272 TRVFTSLTGDTPARFRRKN 290 >SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 364 Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 87 CQHLSGYENVRLL-VPRTAMEELGEEIA-RPVGELRPVQGAADPVLFHLAQAMLPAARTA 144 C LSG + LL + A+E + + R V ELRPV ADPVL + A+ Sbjct: 159 CADLSGSFDFMLLEINHNALERIADAADLRSVSELRPVAAHADPVLGGMLGALF------ 212 Query: 145 GAAGAASVPSVASET-LFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFM 203 A+V A + LF+D + +A+ H+ Q+YG A++ RL+ +AR++D + Sbjct: 213 -----ATVDGSADRSALFVDQLSIAIGVHVVQQYGNGRGNVAASGRRLSSRCQARIKDLV 267 Query: 204 LSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMT 263 S L L++ ++A+ LS+A F RAF+++ G +PH WLQQQRI A LL ++ Sbjct: 268 QSQLNGELTVEQLASACNLSQATFLRAFRETMGKTPHRWLQQQRIEKAVDLLQFSQTQLS 327 Query: 264 TIALECGFSDQSHFSRVFKQVQGMGPAAWLRRR 296 IA CGFSDQSHF+R F Q G P AW R R Sbjct: 328 EIASVCGFSDQSHFTRAFVQAMGATPGAWRRSR 360 >mll0489 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 313 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 124/258 (48%), Gaps = 13/258 (5%) Query: 43 DAWSVIVQLQDFREHRLWRGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPR 102 DA+ V QLQD+ H W R G R G + DL+ + + + V +PR Sbjct: 65 DAFLVQTQLQDYPNHISWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPR 124 Query: 103 TAMEELGEEI-ARPVGELR--PVQGAADPVLFHLAQAMLPAARTAGAAGAASVPSVASET 159 + E++ AR + EL P Q D V+ L G AA + Sbjct: 125 ATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLI----------GTVRAAIKAPEETNR 174 Query: 160 LFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQ 219 LFLD +M+A HL Q YG R G LA WQ + + L +L L ++AA Sbjct: 175 LFLDHLMMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAA 234 Query: 220 SGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSR 279 LS ++FS+AF ++ GL+PH WL +R+ A + ++ +AL CGFSDQSHF+R Sbjct: 235 CKLSVSYFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTR 294 Query: 280 VFKQVQGMGPAAWLRRRS 297 VF ++ G PA W R R+ Sbjct: 295 VFVRLVGTSPATWRRARN 312 >SMa1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 302 Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 11/258 (4%) Query: 36 VIEIPGADAWSVIVQLQDFREHRLWRGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYEN 95 ++ +P A+ +++ L+D + R+G V + DL + S ++ Sbjct: 49 LVSLPPDSAYFLMLYLKDAYHCDVAPDGTESETLRFRQGSVCLVDLAHGACIRLFSDLDS 108 Query: 96 VRLLVPRTAMEELGEEIARP-VGELRPVQGAADPVLFHLAQAMLPAARTAGAAGAASVPS 154 + +PR + E+ E A P LR +G D VL +L A+LP G A + Sbjct: 109 LAFQLPRELIREVSEFSAAPRATTLRCRRGEDDDVLRNLGAALLPLFERQGNFHTAVLQH 168 Query: 155 VASETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLA 214 +A +A+ HL YG + + + WQE ++FM+ H A + +A Sbjct: 169 IA----------IAICAHLLHAYGDHGGQGGPRSTQFTVWQERAAKNFMIDHFADQFPMA 218 Query: 215 EIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQ 274 A+ +G+S F +FK+ G +P WL R A A + L E ++ IA CGF+D+ Sbjct: 219 AAASAAGVSIRRFIESFKRVTGQTPKQWLLGYRTARAKQYLGERSLTLAEIATGCGFTDE 278 Query: 275 SHFSRVFKQVQGMGPAAW 292 HF++VF++V G PAAW Sbjct: 279 DHFTKVFRRVAGTTPAAW 296 >SMc01610 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 294 Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 4/133 (3%) Query: 160 LFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQ 219 L+ DS+ +AL L + G++S R S +LA WQ R DF+ + A+ + L E+A Sbjct: 160 LYGDSLTVALFIDL-MKIGKRSGRKRS---QLAAWQLRRAVDFIEENFARNVRLEELAGL 215 Query: 220 SGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSR 279 +GLS++HFS AFK S G++PH W R+ A ++L +T+IA E GF+DQ+HF+R Sbjct: 216 TGLSQSHFSHAFKASTGVAPHQWHMNARVERAKQMLLRSDAPLTSIAAETGFADQAHFTR 275 Query: 280 VFKQVQGMGPAAW 292 VF++ G PA W Sbjct: 276 VFRKAVGTTPALW 288 >AGc720 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 299 Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 159 TLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAA 218 L+ +S++LAL T + + P +LA WQ D++ H + + L E+A Sbjct: 165 DLYGESLVLALLTD----FLKVKREPVRKRSKLAAWQLRAATDYIREHCLRSIRLEELAE 220 Query: 219 QSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFS 278 + LS++HFS AFK S G+ PH W Q RI L+ ++T IA+ GFSDQ+HFS Sbjct: 221 LTNLSQSHFSHAFKASTGVPPHQWQMQARIDRVKELMMRPDMALTDIAIAAGFSDQAHFS 280 Query: 279 RVFKQVQGMGPAAWLRRR 296 RVF+++ G+ P+ W + R Sbjct: 281 RVFRKMVGVSPSVWQKNR 298 >RSp1115 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 270 Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 67/109 (61%) Query: 184 PASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWL 243 P G L+ Q RVRD+ +H +R++L ++A+ L R F + FKQ+ G++PHAWL Sbjct: 160 PEHTKGALSPAQWQRVRDYCFAHAGERITLDDLASLCALGRFQFLKQFKQTVGMTPHAWL 219 Query: 244 QQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAW 292 + R+ AC LL K++ +A E GF DQSHF+R F+Q G+ P+ + Sbjct: 220 VRLRLEQACSLLSSRSKAIAEVAQEVGFYDQSHFNRAFRQAFGVAPSHY 268 >mlr1270 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 209 Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Query: 153 PSVASETLFLDSMMLALTTHLWQRYGQQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLS 212 P V S+ L+ +S+ AL + Q G S A A L+ Q+ R+ DF+ ++L Q LS Sbjct: 67 PDVPSDRLYFESLAKALAVQIIQ--GAASKPEAPARQTLSFGQKRRLTDFIEANLDQDLS 124 Query: 213 LAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGFS 272 L E+A + +S +H F+ +FG+ PH ++ +R+ A LLH+G ++ IALE GFS Sbjct: 125 LDEMAQVAAISVSHLKVLFRHTFGMPPHQYVIHRRVDRARALLHQGKMPLSQIALEAGFS 184 Query: 273 DQSHFSRVFKQVQGMGPAAWLR 294 QSH ++ K++ G+ PA +R Sbjct: 185 HQSHMAQSMKRLLGVTPATLIR 206 >SMb20859 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 316 Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 108/236 (45%), Gaps = 13/236 (5%) Query: 61 RGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGE--EIARPVGE 118 R R V +G RRG V + R + V+L +P T + + E + P + Sbjct: 89 RSGRSVESGTFRRGVVIIIPAGSSSRWDIPKPVDVVQLYLPHTTLTRIAEATDTFTPT-D 147 Query: 119 LRPVQGAADPVLFHLAQAMLPAARTAGAAGAASVPSVASETLFLDSMMLALTTHLWQRYG 178 L DP+ L +L AA + A +TLF + L T L + Sbjct: 148 LLERTAHPDPITSRL---LLSAADVLEG-------NRALDTLFRQQLTDLLATRLLAAHT 197 Query: 179 QQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLS 238 ++ A G LA R + + S +SLA +AA SGLSR HF RAFK+S GLS Sbjct: 198 GKAPSYQPAVGGLAPNVLRRAIERLRSDSDADVSLAALAADSGLSRFHFCRAFKESTGLS 257 Query: 239 PHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLR 294 PH WL+Q R+ A +L S+ ++A G++ Q+ F+ F+++ G P W R Sbjct: 258 PHNWLRQYRLEQAINMLRNPANSVASVAASLGYNSQTAFAAAFRKLTGETPTEWRR 313