BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0121.p         (193 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5251 [M] COG0668 Small-conductance mechanosensitive channel Pa...   130   2e-30

>PA5251 [M] COG0668 Small-conductance mechanosensitive channel Pae
           Pseudomonas aeruginosa
          Length = 192

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 19  WFDVLVPTAEVILIVLGALAIMRVARMLIGRLALTYGFPNKAAALTQRVLGFFVYGGALL 78
           W   LV   +++LI+L A  + R+ R  + R+   Y  P +     +  L + +   AL+
Sbjct: 11  WSGPLVVAMQILLILLVAWLLQRLVRRTVTRIGERYPVPPELLLPLRGGLRWLIMVSALI 70

Query: 79  WALERMGVSSAALWSAFTGFAAVGAVAFFAAWSVLSNLFCAILIYTTQPFRVGDVIEVLE 138
             LER+GVS+  LW+A TGFAAV AVAFFA WSVLSNLFCA+LI+T  PFR+GD +E+++
Sbjct: 71  MVLERLGVSAEVLWTALTGFAAVAAVAFFAIWSVLSNLFCALLIFTVGPFRIGDRVELID 130

Query: 139 GGDKPGLKGRVLDINLVYTTLAEEHEGGE--TTLQLPNSLFFQRIVRRW 185
             DKPG+ GRV+ INL+YTTL E  E G     LQ+PNSLFFQ+ VRRW
Sbjct: 131 SADKPGVTGRVVAINLLYTTLEETLEDGSPGPLLQIPNSLFFQKAVRRW 179