BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0118.p (392 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1101 [R] COG2984 ABC-type uncharacterized transport system, pe... 86 2e-16 PA3836 [R] COG2984 ABC-type uncharacterized transport system, pe... 75 3e-13 SMc03830 [R] COG2984 ABC-type uncharacterized transport system, ... 72 1e-12 BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, ... 70 9e-12 SP1069 [R] COG2984 ABC-type uncharacterized transport system, pe... 67 9e-11 AGc4844 [R] COG2984 ABC-type uncharacterized transport system, p... 66 2e-10 RSc1740 [R] COG2984 ABC-type uncharacterized transport system, p... 60 8e-09 >VC1101 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Vch Vibrio cholerae Length = 321 Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 125/250 (50%), Gaps = 6/250 (2%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + T Q DGL GY++G+ ++ ++TA+GN ++ + R+ + EN D LV ++ Sbjct: 38 HPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 97 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A +AT T+P++ +V DP+ L L N+ G+ + Q + ++++ Sbjct: 98 PTAQALVSATKTIPIVFTAVT-DPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKE 154 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + P ++++G+++NP A L+ + + + + +V A S D++ A A + K+ Sbjct: 155 ILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAI-AEKS 213 Query: 221 EIAIGLLGADTYAMRKEIAEVAKANDFPIAMDTPGGYTQMGGVATIGVDIVPLYRRGALE 280 ++ L+ + + + A P+ Y + G +A++G D + + A + Sbjct: 214 DVIYALIDNTVASAIEGMIVAANQAKTPV-FGAATSYVERGAIASLGFDYYQIGVQTA-D 271 Query: 281 LMVPMLKGKK 290 + +L+GK+ Sbjct: 272 YVAAILEGKE 281 >PA3836 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 325 Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 126/253 (49%), Gaps = 12/253 (4%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + + L +AGY+DG+ ++ +++A+GN + R+ + + D +V ++ Sbjct: 41 HPALDAARDGVKEALQEAGYEDGKNLKWQYQSAQGNTGTAAQIARKFIGDKPDVIVGIAT 100 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A AT ++P++ +V DP+ LT S + N+ GV LA + +Q+ +++K Sbjct: 101 PSAQALVAATKSIPIVFSTVT-DPVGAHLTPSWEASGTNVTGVSDMLA--LDKQIELIKK 157 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + PG + +G+++NP A ++ + + + + + +V A S D+ AA+S Sbjct: 158 VVPGAKRIGMVYNPGEANSVVVVKELKELLPKMGLSLVEASAPRSVDVSS---AARSLVG 214 Query: 221 EIAIGLLGADTYAMRKEIAEVAKAND--FP-IAMDTPGGYTQMGGVATIGVDIVPLYRRG 277 ++ D + A V ND P IA DT + G +A +G++ + ++ Sbjct: 215 KVDAIYTNTDNNVVSAYEALVKVGNDAKIPLIASDTDS--VKRGAIAALGINYKEMGKQT 272 Query: 278 ALELMVPMLKGKK 290 ++V +LKG+K Sbjct: 273 G-RMVVRILKGEK 284 >SMc03830 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Sme Sinorhizobium meliloti Length = 317 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 132/285 (46%), Gaps = 15/285 (5%) Query: 7 VASAGLVAASMSAGISFAQETTVPRVGFVAGAGGYPKMAVTNQAFFDGLADAGYKDGRTM 66 +A A VA S+ A A E TV V +P + D LA AGYK+G + Sbjct: 6 IALAATVALSLPA---RADEVTVAVTAIVE----HPALDAARDGVKDALAAAGYKEGENL 58 Query: 67 QVIFRTAEGNMSLMPALIRETLPENVDYLVVSSSPGCAAAKNATTTVPVLCISVQDDPIR 126 + I+ +A+GN + + R+ E +V S+P A ++T +PV+ +V DP+ Sbjct: 59 KFIYESAQGNPATAAQIARQFAGEAPSVIVPISTPSAQAVVSSTRDIPVVFTAVS-DPLG 117 Query: 127 EGLTSSLASGSGNIVGVHSYLADGISQQLGMLQKLKPGLQTLGILFNPSNATHKRLLSDW 186 L + GN+ G+ +++ + +++++ P ++T+G L+N A LL+ Sbjct: 118 AQLVKDMEKPGGNVTGLSDL--SPVAEHVALIKEILPNVKTIGYLYNSGEANSVSLLAVL 175 Query: 187 ERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKAEIAIGLLGADTYAMRKEIAEVAKAND 246 + ++ + ++ AT S +++ A A I I A+ +A VA+ + Sbjct: 176 KEEAEKAGLSVIESAATKSAEVQGAARALVGRADAIYIPTDNTIISALEGAVA-VAEESK 234 Query: 247 FPI-AMDTPGGYTQMGGVATIGVDIVPLYRRGALELMVPMLKGKK 290 P+ DT G VA +G + + ++ E++V +LKG+ Sbjct: 235 LPLFTADTDS--VSRGAVAALGFNYYDVGKQTG-EVVVRVLKGEN 276 >BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Bme Brucella melitensis Length = 314 Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + D LA+AGYK+G ++ I+++A+GN + + R+ + E D +V S+ Sbjct: 30 HPALDAARDGVKDALAEAGYKEGENLKFIYQSAQGNPATAAQIARQFVGEGPDVIVPIST 89 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A +AT +PV+ +V DP+ L L GN+ G+ + + + ++++ Sbjct: 90 PSAQAVVSATLDIPVVFTAVS-DPVGAQLVKDLKKPGGNVTGLSDM--SPVVEHIKLIKE 146 Query: 161 LKPGLQTLGILFN 173 + P ++ LG L+N Sbjct: 147 VMPNIKKLGYLYN 159 >SP1069 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Spn Streptococcus pneumoniae TIGR4 Length = 344 Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 97/190 (51%), Gaps = 18/190 (9%) Query: 8 ASAGLVAASM---SAGISFAQ----ETTVPRVG---FVAGAGGYPKMAVTNQAFFDGLAD 57 A A LVA S+ S S AQ E + ++G FV+ +P + + + DGLA+ Sbjct: 22 ALAVLVAGSLIYSSMNKSEAQNNKDEKKITKIGVLQFVS----HPSLDLIYKGIQDGLAE 77 Query: 58 AGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSSPGCAAAKNATTTVPVLC 117 GYKD + +++ F +EG+ S + + ++ + D +V ++P +AT +PV+ Sbjct: 78 EGYKDDQ-VKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIM 136 Query: 118 ISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQKLKPGLQTLGILFNPSNA 177 ++ D PI L L GN+ GV + + QQ+ +++ L P ++T+G L++ S Sbjct: 137 AAITD-PIGANLVKDLKKPGGNVTGVSDH--NPAQQQVELIKALTPNVKTIGALYSSSED 193 Query: 178 THKRLLSDWE 187 K + +++ Sbjct: 194 NSKTQVEEFK 203 >AGc4844 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 10/252 (3%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + LA+AGYK+G ++ ++ +A+GN + R+ + + +V S+ Sbjct: 48 HPALDAARDGVKAALAEAGYKEGENLKFLYESAQGNPGTAAQIARQFVGDAPAVIVPIST 107 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A AT +PV+ +V DP+ L S+ GN+ G+ L G + L ++++ Sbjct: 108 PSAQAVVAATRDIPVVFTAVS-DPVGAQLIKSMEKPGGNVTGLSDMLPVG--EHLALIKE 164 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + P +++G ++N + A L+ + + + ++ AT S +++ A A KA Sbjct: 165 ISPNAKSIGFIYNSAEANSASTLALLKAEADKAGLKVIESVATKSAEVQGATRALVG-KA 223 Query: 221 EIAIGLLGADTYAMRKEIAEVAKANDFPI-AMDTPGGYTQMGGVATIGVDIVPLYRR-GA 278 ++ + + +A VA P+ A DT G VA +G + + ++ GA Sbjct: 224 DVIYVPTDNTIVSAFEAVAGVASEAKIPLYAADTDS--VARGAVAALGFNYFDVGKQTGA 281 Query: 279 LELMVPMLKGKK 290 ++V +LKG+K Sbjct: 282 --VVVRILKGEK 291 >RSc1740 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Rso Ralstonia solanacearum Length = 329 Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/253 (21%), Positives = 120/253 (47%), Gaps = 12/253 (4%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + + L G+ G+ ++ +++A+G+ + + R+ + + D +V ++ Sbjct: 45 HPALDAIRDGVKEELKAQGFDAGKNLKWEYQSAQGSAATAAQIARKFIGDKPDAIVAITT 104 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A AT TVPV+ V DP+ L S N+ GV L + +Q+ ++++ Sbjct: 105 PAAQAVVAATKTVPVVYAGVT-DPVAAQLVKSWEPSGTNVTGVSDKLP--LDKQIALIKR 161 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + P + +G+++NP A ++++ ++ + Q + +V A + D+ A K+ Sbjct: 162 VVPHAKRVGMIYNPGEANSVVVVNELKKLLSAQGLTLVESAAPRTVDIAP---ATKNLIG 218 Query: 221 EIAIGLLGADTYAMR--KEIAEVAKANDFP-IAMDTPGGYTQMGGVATIGVDIVPLYRRG 277 ++ + D + + + +VA P +A DT + G +A +G++ L R+ Sbjct: 219 KVDVIYTSTDNNVVSAYESLVKVANEAKIPLVAADTDS--VKRGAIAALGINYYRLGRQT 276 Query: 278 ALELMVPMLKGKK 290 ++ +LKG+K Sbjct: 277 G-TVVARILKGEK 288