BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0057.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 142 1e-33 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 134 2e-31 AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 128 1e-29 AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 101 2e-21 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 100 5e-21 RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 98 2e-20 BS_ywbI [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 97 4e-20 BS_yybE [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 94 2e-19 lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua 93 6e-19 BS_gltC [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 91 4e-18 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 1/284 (0%) Query: 3 YFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLAAH 62 Y EV+ GS+ AA LN+ SAISRQ+A LE L L +R +G+ P AGELL AH Sbjct: 11 YLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEAGELLVAH 70 Query: 63 ALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLSVG 122 + + E + + L+AL+GLR+G+V+LA EGF + + ++ F ++ GI ++ + Sbjct: 71 YRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGIELEVRMA 130 Query: 123 NAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELA-HRKQVSLSEL 181 A ++E AVDL L + D ++ V R P+ ++ H LA HR V + L Sbjct: 131 GANEGVALVKEDAVDLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHRGAVPMRAL 190 Query: 182 APYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPIR 241 LA+ + M +L + L P L +S++ L FV +G G+ F L + Sbjct: 191 RNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNFVKSGIGVAFMPELTVS 250 Query: 242 KLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNAL 285 + G + LP+ + + I S GR L AA A L L Sbjct: 251 HEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAIACLEHL 294 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 6/284 (2%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 + YF V R SI EAA LNVASSA++RQI +LE E+ PLF+R+ G+R AGE+ A Sbjct: 12 IHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTGAGEIFA 71 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 H + + ER+ +EL AL+GLR G V++A E + +P ++ ++ I ++ Sbjct: 72 RHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPDITVGVT 131 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 + + + + + GAVDLGL F + AD++ + A++ P H LA + ++ ++ Sbjct: 132 LLGSQAIPEAVSSGAVDLGLAFALPRSADLQQVSVGHFRLGAIVSPQHPLARHQAIAFAD 191 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEP---TLAADSISALLCFVMAGQGIGFSAA 237 + L M K +++ L+ A RR L EP L + S+ G G+ F Sbjct: 192 CVEHGLIMAKSELSIHHLL-APLQRR--LREPRRAVLESSSLELSRQLARRGLGVAFQTR 248 Query: 238 LPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAF 281 L I + +G+L LP++D L + GR LP A A Sbjct: 249 LGIEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVAVDAL 292 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 135/276 (48%) Query: 3 YFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLAAH 62 YF E+VR S+ AA LNVA +A+SRQI LE +PL ER +RG++ AAGELLAA Sbjct: 40 YFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAAGELLAAR 99 Query: 63 ALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLSVG 122 A + E + + + LKGL+RG V + + + QF ++ +RF++ + Sbjct: 100 AGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKLRFEVHIT 159 Query: 123 NAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSELA 182 +A + + DL ++ + +KV R + H LA + +VSL ELA Sbjct: 160 SARQAMEALGAAEADLVVSLFAPKLSGVKVRSRTRISYDVIFPAGHALAAQPEVSLKELA 219 Query: 183 PYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPIRK 242 PLA+P K+ R+ D + + L+P S+ L V+ AL + + Sbjct: 220 GMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLGNAAATLLPALSVAR 279 Query: 243 LVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAA 278 +R G++ A+P+ K Q+++ R L AA Sbjct: 280 EIRSGQMVAVPLAGKKGIHTQIDLCVAPDRQLSFAA 315 >AGl1195 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 5/235 (2%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +R F VV S AA+ L+++ A++R+I +LE + PL ER R + P A G+ + Sbjct: 10 LRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVAPTAMGQEVM 69 Query: 61 AHALRMQLEAERIGNELAALK--GLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQ 118 RM E L A+K RRG + +AC A F+P I+ F +Q+ IR + Sbjct: 70 PLVRRM---LEEFDGSLFAMKDGAQRRGLITMACVPTAAFYFLPTVIKTFSKQYPHIRLR 126 Query: 119 LSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSL 178 + A Q + G V+ G+ D D+ E P + M H LA + + Sbjct: 127 IRDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFVLAMRKDHPLAAFETIQW 186 Query: 179 SELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIG 233 +L P+PL + ++ R L+D +R N+ L ++ L V AG GI Sbjct: 187 DQLEPHPLVVVDRSSGNRTLLDGALARHNLKLNWFYEVTHLNTSLGLVEAGLGIS 241 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 131/297 (44%), Gaps = 16/297 (5%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +R FL VV S AA L+++ A+SR+I +LE + P+ ER R + A G L Sbjct: 10 LRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELV 69 Query: 61 AHALRMQLEAERIGNELAALKGL---RRGEVKLACTEGFALEFVPATIEQFCRQHKGIRF 117 RM E L A++ + R G V +AC A F+P I QF ++ IRF Sbjct: 70 PLVRRM---LEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRF 126 Query: 118 QLSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVS 177 ++ A Q + G V+ G+ D D+ + P + H LA + V Sbjct: 127 RILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLAAKPSVG 186 Query: 178 LSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAA 237 ++L PY L ++ R L+DA ++ N+ L +S L V AG GI + Sbjct: 187 WADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLGI---SV 243 Query: 238 LPIRKLVREGK----LAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIARAA 290 LP ++ G L PIRD +++ + + G TL AA FL LI A Sbjct: 244 LP--RMATPGGDHPFLITRPIRDPEISR-TIGVVRRRGGTLSPAAERFLKMLIGVWA 297 >RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 324 Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 133/290 (45%), Gaps = 5/290 (1%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +R F ++ S+ +AA+ L ++ S +SR + +E + LF+R A G+ P A L Sbjct: 9 MRVFHAILEHRSVRKAADQLEMSRSLVSRYLTEMEDMIGGRLFDRTATGLMPTDAVPYLL 68 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 +A M+ E++ +++ L+ L++G + ++ +EG + + F +++ G+ L+ Sbjct: 69 EYARGMEASQEKLLDQMHQLRSLQKGNLLISLSEGLVDTLMEDVLAGFMKKYPGVEVVLN 128 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRA--PILAVMHPAHELAH-RKQVS 177 + + + +GL + P + F A I+A +HP H LA V Sbjct: 129 MRATAEIINDVATNEAHIGLAYN--PPMTSGIAFCASAVHHIVAAVHPEHPLARCDDPVP 186 Query: 178 LSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAA 237 L++ YP+ + + LI N+ L P A+++ AL + +G+ F Sbjct: 187 LAQALAYPVGIMPPAFGLGLLIRTIAKAENLNLTPNFNANTLMALRAYARHTRGVAFITD 246 Query: 238 LPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIA 287 IRK V G L +P++ + GR LP AA+ +N++ A Sbjct: 247 FSIRKEVAAGLLVGVPLKHPLAENQYARVMVKEGRPLPRAAQEVINSINA 296 >BS_ywbI [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 301 Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 132/285 (46%), Gaps = 12/285 (4%) Query: 3 YFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLAAH 62 YFLEV R S T+A+ +L V+ IS+ I LE EL LF R R + AG + Sbjct: 8 YFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDAGHSMYVQ 67 Query: 63 ALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLSVG 122 A + + + +EL + +++G V++ F P + F + + FQL Sbjct: 68 AQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNVTFQLVED 127 Query: 123 NAMHVAQQIREGAVDLGLTFTMAPDADIKVEFA-QRAPILAVMHPAHELAHRKQVSLSEL 181 ++ V + + +G++D+G+ + + DI F + ++ V+HP+H LA K+ L EL Sbjct: 128 GSIKVQEGVGDGSLDIGVV-VLPANEDIFHSFTIVKETLMLVVHPSHRLADEKECQLREL 186 Query: 182 APYPLAMPKKTITMR-RLIDACCS---RRNVLLEPTLAADSISALLCFVMAGQGIGFSAA 237 P ++ + R++ C R +++ E T D IS + V A GIG Sbjct: 187 KDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYE-TSQWDFISEM---VSANLGIGLLPE 242 Query: 238 LPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFL 282 R L E K+ +P+ D + L I R L AARA+L Sbjct: 243 RICRGLDPE-KVKVIPLVDPVI-PWHLAIIWRKDRYLSFAARAWL 285 >BS_yybE [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 278 Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 4/276 (1%) Query: 13 ITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLAAHALRMQLEAER 72 +T+AA +L++ A+SR IARLE L PLF+R R + N G + M E Sbjct: 4 VTKAAKSLSITQPALSRSIARLENHLGVPLFDRQGRSISLNQYGHIFLRRVQAMMKEYTE 63 Query: 73 IGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLSVGNAMHVAQQIR 132 E+ AL +G V L VP I F +++ I FQL ++ + ++++ Sbjct: 64 GKEEIQALLKPDQGVVSLGFLHTLGTTLVPDLIGSFQQEYPNISFQLKQNHSYWLLERLK 123 Query: 133 EGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSELAPYPLAMPKKT 192 G +DL L ++ P+ I+ + + H LA R+ ++L+E+A + KK Sbjct: 124 SGDLDLCLLASIKPENPIQWIKLWSEELFVFVPNDHPLASRESITLNEIAGERFILLKKG 183 Query: 193 ITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPIRKLVREGKLAAL 252 +R +D + N+ + + FV AG GI + LP K + + K+ + Sbjct: 184 YALRMTVDELFEKANIQPNIMFEGEEATTAAGFVAAGLGI---SILPDLKGLDQSKITKI 240 Query: 253 PIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIAR 288 + + + + I + GR L A F +I+ Sbjct: 241 RVSWPECQRV-IGIAWIKGRFLSPVAETFKQYVISH 275 >lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua Length = 295 Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 131/267 (49%), Gaps = 16/267 (5%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 ++YF+EV R +T+A+ L+VA SA+SRQI +LE EL PLF+RV R M+ + G+ Sbjct: 6 LKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELGVPLFDRVGRNMQLTSVGQDFL 65 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 + A E ++ + +G V++ + + +P+ I F ++ I +Q Sbjct: 66 SQATIALNELQKAEALVTEYTDPTKGTVRVGLPNSLSTKVLPSVISTFREKYPEITYQFM 125 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVE----FAQRAPILAVMHPAHELAHRKQV 176 G + + + G +D+ + P++ ++E F ++ + ++ +H LA V Sbjct: 126 EGTNEELTEMLVNGVLDMTF-LSPVPESSEQIEALRFFDEKLKL--IVPTSHHLAENFTV 182 Query: 177 SLSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSA 236 SL EL+ + + + +++ +++ EP +A S + G G+G S Sbjct: 183 SLKELSSEKFVLYPEDFDLYKIVTKAANKKG--FEPQIAFQSRDFYTIQGLVGAGLGIS- 239 Query: 237 ALPIRKLVREGKL----AALPIRDKDM 259 LP +++ +G + ++ +RDK++ Sbjct: 240 ILP--EMILDGAIFKETKSIALRDKEL 264 >BS_gltC [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 300 Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 7/236 (2%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYF+EV R ++EAA+ L+VA SAISRQIA LE EL+ LFER R ++ G+ Sbjct: 6 LRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPIGKEFL 65 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 H + ++ RG VK+ A + +P I F ++ + F L Sbjct: 66 IHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHVEFLLR 125 Query: 121 VGNAMHVAQQIREGAVDLGL---TFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVS 177 G+ + + +R +DL L T D K+ F ++ I A++ H LA +K V Sbjct: 126 QGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEK--IYALVPLNHPLAKQKTVH 183 Query: 178 LSELAPYPLAMPKKTITMRRL-IDACCSRRNVLLEPTLAADSISALLCFVMAGQGI 232 L +L + + +R + ID C L T D + A+ V AG G+ Sbjct: 184 LIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGED-LDAIKGLVSAGMGV 238