BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0085.p (862 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ECs1278 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Es... 667 0.0 Z1536 [NU] COG3188 P pilus assembly protein, porin PapC EcZ Esch... 665 0.0 PA2130 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pse... 662 0.0 YPO1920 [NU] COG3188 P pilus assembly protein, porin PapC Ype Ye... 613 e-175 YPO3879 [NU] COG3188 P pilus assembly protein, porin PapC Ype Ye... 554 e-157 XF0081 [NU] COG3188 P pilus assembly protein, porin PapC Xfa Xyl... 489 e-137 STM0338 [NU] COG3188 P pilus assembly protein, porin PapC Sty Sa... 465 e-130 PA4084 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pse... 424 e-118 YPO1709 [NU] COG3188 P pilus assembly protein, porin PapC Ype Ye... 423 e-118 STM0546 [NU] COG3188 P pilus assembly protein, porin PapC Sty Sa... 376 e-103 >ECs1278 [NU] COG3188 P pilus assembly protein, porin PapC Ecs Escherichia coli O157:H7 Length = 840 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/847 (42%), Positives = 524/847 (61%), Gaps = 38/847 (4%) Query: 1 MAWPLTPAAAAQQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVFSHR 60 M ++PA + ++ Y F L S ++ SLA+ ++ PG Y +D++ N S Sbjct: 21 MGSEISPATPSDEDNYTFDPQLFRGSRFSQSSLAKLTTRESVAPGNYKMDIYTNNKLSGS 80 Query: 61 RSLRFDLFEGQGVAACFTAQDAALLNLRPELLGQ-LGQRE--CARIEELASGASAVFEIA 117 ++ F V C T + A + L+ G+ G+++ C +ELA G ++ +++ Sbjct: 81 WNVTFKEAADGRVLPCLTPEVADAIGLK---TGEDKGEKDPVCTFAKELAPGITSQTQLS 137 Query: 118 DLRLNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRVAQSSNSAT----YG 173 LRL++SVPQSQL RGYV P D G S+ F+NY I+ YY+ N+ + + Sbjct: 138 QLRLDLSVPQSQLISRPRGYVPPSELDTGASLAFMNY-IANYYNVAYSGQNAHSQRSLWA 196 Query: 174 FTNSGVNLGLWRLRQQGSMRYDSQAGLAWNPVRTYAKRALPAWRSELTVGENFTTGKLLS 233 N G+NLG W+ RQ +M +D+ G WN +R+Y +R LPA S+L +G+ T+G+ S Sbjct: 197 SFNGGINLGAWQYRQLSNMTWDNDKGNQWNNIRSYLQRPLPAINSQLMMGQLITSGRFFS 256 Query: 234 GLAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDD 293 GL+Y GV +++D+RMLPDS+RGYAP IRG A +NA V V Q EIY+TTVAPG F I+D Sbjct: 257 GLSYHGVSLATDERMLPDSMRGYAPTIRGVAATNARVSVMQNGHEIYQTTVAPGPFEIND 316 Query: 294 LYPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRDTETAALFLD 353 LYPTSY+GDLDVTV EA+G+ ++ SVPFSA+PESMRPG+SRY++ +G+T+D+ ++F D Sbjct: 317 LYPTSYSGDLDVTVTEANGAVSRFSVPFSAVPESMRPGTSRYNVEVGKTQDSGDDSMFGD 376 Query: 354 TLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADTGHGNS-GGWM 412 +Q G++N LT N G R+A GYQ+ +LG LG+ G NL++SHA + GWM Sbjct: 377 LTWQHGMTNTLTFNSGSRIADGYQALMLGGVYGSSLGAFGANLTWSHARVPESEAQSGWM 436 Query: 413 LGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSRF 472 + +S++F+ T T S+A YRYST+GYR+L DVL ER + +W SS ++QQSRF Sbjct: 437 SQLTWSKTFQPTSTTVSLAGYRYSTSGYRDLADVLGERHAASNKQSW--DSSQWRQQSRF 494 Query: 473 DMSVSQQLGSAGSLYLSGLTQTFYHNRSRITQMQFGYSTMWSNGMSMNLAFQRQQISASS 532 D+++SQ L + G+L++SG TQ + +SR TQ+Q GYS +S+G+SMNL+ RQ++ Sbjct: 495 DLTLSQSLANYGNLFVSGSTQNYRGGKSRDTQLQLGYSNSFSHGISMNLSVGRQRMGGYK 554 Query: 533 SSALELADGRQPSTSRPGSSVMLSLSIPLGKAGTERPVMSTSLVR-TAAQDVLQSQVSGM 591 + +D Q TS LS S PLG G P +S S T LQS ++GM Sbjct: 555 DN----SDDMQTVTS-------LSFSFPLGGNGPRVPSLSNSWTHSTDGSSQLQSSLTGM 603 Query: 592 LPGPHRLSYSVGANHASGGRQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAG 651 L +YS+ +Q +L+GN+ R S+ + N ++G+DYWQA+ Sbjct: 604 LDEAQTTNYSLNVMRDQQYKQTTLSGNMQKRFSQTTVGLNASKGQDYWQAS--------- 654 Query: 652 GITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLS 711 G +GA+AVHG GITFGPYLG+TFAL+EA GA+GA+++N I+ +G+AL+P+++ Sbjct: 655 ---GNVQGAMAVHGGGITFGPYLGETFALVEAKGAEGAKVYNSSQLEINDSGYALVPAVT 711 Query: 712 AYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLP 771 Y+ N + L G + +E+++S+R V P AGA +K+ FRTR G ALLI+ +G LP Sbjct: 712 PYRYNRISLDPQGMDGDAELVDSERQVAPVAGAAVKVIFRTRPGKALLIKSRMADGSELP 771 Query: 772 MGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTFQYDLQGQDLEQAL 831 MGADVL E VVG+ GQG Q YLR++ T+ L VRWG+G + C +D+ G+D + Sbjct: 772 MGADVLDENNTVVGIAGQGGQIYLRTEQTKGHLSVRWGEGANDSCQLPFDISGKDSNSPI 831 Query: 832 LRLEAAC 838 +RL C Sbjct: 832 IRLNETC 838 >Z1536 [NU] COG3188 P pilus assembly protein, porin PapC EcZ Escherichia coli O157:H7 EDL933 Length = 840 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/847 (42%), Positives = 523/847 (61%), Gaps = 38/847 (4%) Query: 1 MAWPLTPAAAAQQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVFSHR 60 M ++PA + ++ Y F L S ++ SLA+ ++ PG Y +D++ N S Sbjct: 21 MGSEISPATPSDEDNYTFDPQLFRGSRFSQSSLAKLTTRESVAPGNYKMDIYTNNKLSGS 80 Query: 61 RSLRFDLFEGQGVAACFTAQDAALLNLRPELLGQ-LGQRE--CARIEELASGASAVFEIA 117 ++ F V C T + A + L+ G+ G+++ C +ELA G ++ +++ Sbjct: 81 WNVTFKEAADGRVLPCLTPEVADAIGLK---TGEDKGEKDPVCTFAKELAPGITSQTQLS 137 Query: 118 DLRLNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRVAQSSNSAT----YG 173 LRL++SVPQSQL RGYV P D G S+ F+NY I+ YY+ N+ + + Sbjct: 138 QLRLDLSVPQSQLISRPRGYVPPSELDTGASLAFMNY-IANYYNVAYSGQNAHSQRSLWA 196 Query: 174 FTNSGVNLGLWRLRQQGSMRYDSQAGLAWNPVRTYAKRALPAWRSELTVGENFTTGKLLS 233 N G+NLG W+ RQ +M +D+ G WN +R+Y +R LPA S+L +G+ T+G+ S Sbjct: 197 SFNGGINLGAWQYRQLSNMTWDNDKGNQWNNIRSYLQRPLPAINSQLMMGQLITSGRFFS 256 Query: 234 GLAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDD 293 GL+Y GV +++D+RMLPDS+RGYAP IRG A +NA V V Q EIY+TTVAPG F I+D Sbjct: 257 GLSYHGVSLATDERMLPDSMRGYAPTIRGVAATNARVSVMQNGHEIYQTTVAPGPFEIND 316 Query: 294 LYPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRDTETAALFLD 353 LYPTSY+GDLDVTV EA+G+ ++ SVPFSA+PESMRPG+SRY++ +G+T+D+ ++F D Sbjct: 317 LYPTSYSGDLDVTVTEANGAVSRFSVPFSAVPESMRPGTSRYNVEVGKTQDSGDDSMFGD 376 Query: 354 TLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADTGHGNS-GGWM 412 +Q G++N LT N G R+A GYQ+ +LG LG+ G NL++SHA + GWM Sbjct: 377 LTWQHGMTNTLTFNSGSRIADGYQALMLGGVYGSSLGAFGANLTWSHARVPESEAQSGWM 436 Query: 413 LGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSRF 472 + +S++F+ T T S+A YRYST+GYR+L DVL ER + +W SS ++QQSRF Sbjct: 437 SQLTWSKTFQPTSTTVSLAGYRYSTSGYRDLADVLGERHAASNKQSW--DSSQWRQQSRF 494 Query: 473 DMSVSQQLGSAGSLYLSGLTQTFYHNRSRITQMQFGYSTMWSNGMSMNLAFQRQQISASS 532 D+++SQ L + G+L++SG TQ + +SR TQ+Q GYS +S+G+SMNL+ RQ++ Sbjct: 495 DLTLSQSLANYGNLFVSGSTQNYRGGKSRDTQLQLGYSNSFSHGISMNLSVGRQRMGGYK 554 Query: 533 SSALELADGRQPSTSRPGSSVMLSLSIPLGKAGTERPVMSTSLVR-TAAQDVLQSQVSGM 591 + +D Q TS LS S PLG G P +S S T LQS ++GM Sbjct: 555 DN----SDDMQTVTS-------LSFSFPLGGNGPRVPSLSNSWTHSTDGSSQLQSSLTGM 603 Query: 592 LPGPHRLSYSVGANHASGGRQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAG 651 L +YS+ +Q +L+GN+ R S+ + N ++G+DYWQA+ Sbjct: 604 LDEAQTTNYSLNVMRDQQYKQTTLSGNMQKRFSQTTVGLNASKGQDYWQAS--------- 654 Query: 652 GITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLS 711 G +GA+AVHG GITFGPYLG+TFAL+EA GA+GA+++N I+ +G+AL+P+++ Sbjct: 655 ---GNVQGAMAVHGGGITFGPYLGETFALVEAKGAEGAKVYNSSQLEINDSGYALVPAVT 711 Query: 712 AYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLP 771 Y+ N + L G + +E+++S+R V P AGA +K+ FRTR G ALLI+ +G LP Sbjct: 712 PYRYNRISLDPQGMDGDAELVDSERQVAPVAGAAVKVIFRTRPGKALLIKSRMADGSELP 771 Query: 772 MGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTFQYDLQGQDLEQAL 831 MGADVL E VVG+ GQG Q YLR++ T+ L VRWG+ + C +D+ G+D + Sbjct: 772 MGADVLDENNTVVGIAGQGGQIYLRTEQTKGHLSVRWGEXANDSCQLPFDISGKDSNSPI 831 Query: 832 LRLEAAC 838 +RL C Sbjct: 832 IRLNETC 838 >PA2130 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pseudomonas aeruginosa Length = 872 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/831 (46%), Positives = 508/831 (61%), Gaps = 45/831 (5%) Query: 35 RFNRPGTIEPGRYSVDVFLNGVFSHRRSLRFDLFEGQGVAACFTAQDAALLNLRPELLGQ 94 RFN+ G I+PGRY VDV+LN F+ R + F G +D LR L + Sbjct: 53 RFNQDGRIDPGRYHVDVYLNERFASRSEVSFRANPASGAVEPCLDEDF----LRQRLGAK 108 Query: 95 LGQ--------RECARIEELASGASAVFEIADLRLNVSVPQSQLKQVARGYVDPDLYDAG 146 G R CA + G+ ++A LRL++SVPQ+ L RGYV P+ +DAG Sbjct: 109 PGDDPRKSGDGRHCAFLGARLPGSRFSLDVARLRLDLSVPQALLDLKPRGYVSPEEWDAG 168 Query: 147 QSIGFVNYSISQYYSRV-AQSSNSATYGFT--NSGVNLGLWRLRQQGSM---RYDSQAGL 200 S+GFVNY + Y S S + Y + NSG+NLGLWRLR Q + RY+ QA Sbjct: 169 DSMGFVNYDTNLYRSEYRGGESGRSDYAYVGLNSGINLGLWRLRHQSNYTYSRYNGQARR 228 Query: 201 AWNPVRTYAKRALPAWRSELTVGENFTTGKLLSGLAYQGVEISSDDRMLPDSLRGYAPVI 260 WN +RTYA+RALPAWRSELT GE++T G LL + Y+G+ +++DDRMLP+SLR YAP + Sbjct: 229 KWNSIRTYAQRALPAWRSELTAGESYTAGNLLGSIGYRGLSLATDDRMLPESLRRYAPQV 288 Query: 261 RGTARSNALVIVSQKAREIYRTTVAPGSFVIDDLYPTSYNGDLDVTVIEADGSRAQLSVP 320 RGTA + A V++SQ R+I VAPG FVIDDLY ++Y GDLDV V EADGS + SVP Sbjct: 289 RGTAATAARVVISQNGRKIREVNVAPGPFVIDDLYDSAYAGDLDVQVFEADGSVSSFSVP 348 Query: 321 FSALPESMRPGSSRYSLTLGRTRDT-ETAALFLDTLYQRGLSNALTGNVGLRLASGYQSA 379 F+++PESMRPG SRYS TLG+ R + LF D YQRG+SNALT N+GLR+A Y + Sbjct: 349 FASVPESMRPGLSRYSFTLGQARQYGDGDDLFADFTYQRGMSNALTANLGLRVADDYLAM 408 Query: 380 VLGSTLAGRLGSLGLNLSYSHADTGHG-NSGGWMLGMAYSRSFEDTGTQFSIASYRYSTA 438 + G LA R G+ GLN +YS A G GW +G+ YSR+F+ TGT ++A YRYST Sbjct: 409 LGGGVLATRFGAFGLNSTYSSARVEDGARKQGWRIGLDYSRTFQPTGTTLTLAGYRYSTE 468 Query: 439 GYRELVDVLSERQSNRAATAWLASSSSYQQQSRFDMSVSQQLGSAGSLYLSGLTQTFYHN 498 GYREL DVL R + R W S SY+Q+++F++ VSQ LG G+LYLSG + FY Sbjct: 469 GYRELGDVLGSRDALRHGDTW--DSGSYKQRNQFNLLVSQALGGYGNLYLSGSSSDFYDG 526 Query: 499 RSRITQMQFGYSTMWSNGMSMNLAFQRQ-----QISASSSSALELADGRQPSTSRPGSSV 553 +SR TQ+QFGYS W +S NLA+ RQ Q +EL R + + ++ Sbjct: 527 KSRDTQLQFGYSNTWGQ-LSYNLAWSRQTTTYYQEQGDQDPGVELLR-RDRRSGQRNDTL 584 Query: 554 MLSLSIPLGKAGTERPVMSTSLVRTAAQD---VLQSQVSGMLPGPHRLSYSVGANHASGG 610 LS+S+PLG + + P +S R + LQ+ ++G L SY++ AN S Sbjct: 585 TLSVSMPLGSS-SRAPTLSAMATRRSGDSRGGSLQTGLNGTLGDERTWSYALSANRDSEV 643 Query: 611 RQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAGGITGIARGALAVHGDGITF 670 + NG L + + A +N A+G Y Q + GGI RGAL H DG+T Sbjct: 644 ADTTWNGTLQKQAALATVNAGYAQGDRYRQYS--------GGI----RGALVAHRDGLTL 691 Query: 671 GPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLSAYQRNVVELASAGSNSKSE 730 GP +GDTFAL+EA GA GA I GQGA IDGNG+AL PSLS Y+ N + L G + +E Sbjct: 692 GPSVGDTFALVEAKGASGAAIRGGQGARIDGNGYALAPSLSPYRYNPISLDPVGIDPDAE 751 Query: 731 ILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLPMGADVLTEEGEVVGMVGQG 790 +LE++R V PYAGA++++ FRT GH LLI+ R++G LP+GA V+ + G +GMVGQG Sbjct: 752 LLETERKVAPYAGASVRVTFRTLTGHPLLIQARREDGSVLPLGAVVVDDGGAAIGMVGQG 811 Query: 791 SQAYLRSDSTRARLLVRWGDGQQERCTFQYDLQGQDLEQALLRLEAACVAA 841 Q Y R+++ R RLLV+WG ++ERC YDL G +QAL+RL C AA Sbjct: 812 GQVYARAENQRGRLLVQWGTARKERCELPYDLAGVSRDQALIRLRGTCRAA 862 >YPO1920 [NU] COG3188 P pilus assembly protein, porin PapC Ype Yersinia pestis Length = 863 Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust. Identities = 344/853 (40%), Positives = 511/853 (59%), Gaps = 42/853 (4%) Query: 12 QQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVFSHRRSLRFDLFEGQ 71 Q+ Y+F +AL S + GS+ARFN+ + + G+Y VD+++N F R + F + + Sbjct: 28 NQDDYIFDDALVRGSSLGLGSIARFNKKNSYDAGQYQVDMYMNNKFVDRLKMLF-VDKDN 86 Query: 72 GVAACFTAQDAALLNLRPELLGQLGQRE-CARIEELASGASAVFEIADLRLNVSVPQSQL 130 V C + ++ E L + C + + + F+ A LR ++S+PQ + Sbjct: 87 SVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQSILPASDFRFDHAKLRFDLSIPQKFV 146 Query: 131 KQVARGYVDPDLYDAGQSIGFVNYSISQY---YSR--VAQSSNSATYGFTNSGVNLGLWR 185 K V RGYVDP AG +IGF NY+++QY Y++ + +++NS TY NSG+N+G+WR Sbjct: 147 KNVPRGYVDPKNLTAGNTIGFSNYNLNQYHVDYNKEGIKRTTNS-TYLSLNSGINIGMWR 205 Query: 186 LRQQGSMRYDSQAGLAWNPVRTYAKRALPAWRSELTVGENFTTGKLLSGLAYQGVEISSD 245 RQQGS+RYD+ G W R Y++RALP SE+T+GE F++G+ S L + GV +S+D Sbjct: 206 FRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEITLGETFSSGQFFSSLGFLGVALSTD 265 Query: 246 DRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDDLYPTSYNGDLDV 305 DRMLP+S RGYAPV+RG AR+NA V+V Q R IY+TTV+PG+F +DL T + GDL V Sbjct: 266 DRMLPESQRGYAPVVRGIARTNARVMVYQNNRSIYQTTVSPGAFEFNDLSVTHFGGDLTV 325 Query: 306 TVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRDTETAALFLDTLYQRGLSNALT 365 + EADGS + VPF+++PES+RPG SRYS G+ RD F + YQ+G+SNA+T Sbjct: 326 EINEADGSVSTFQVPFASVPESLRPGYSRYSFAAGQVRDVGNNETFSELTYQQGISNAIT 385 Query: 366 GNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADTGHGN-SGGWMLGMAYSRSFEDT 424 N G+RLASGYQ+ +LG +G+LGLN +YSHA G GWM ++SR+F+ T Sbjct: 386 ANTGIRLASGYQAIMLGGVFTHYIGALGLNTTYSHARLPDGEQQQGWMAKASFSRTFQPT 445 Query: 425 GTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSRFDMSVSQQLGSAG 484 T S+A YRYST GYR+L DVL R ++ + +W +SS+Y+Q+SR ++S++Q G Sbjct: 446 NTTLSVAGYRYSTDGYRDLSDVLGVRATSNDS-SW--NSSTYRQRSRAEISLNQNFHRYG 502 Query: 485 SLYLSGLTQTFYHNRSRITQMQFGYS-TMWSNGMSMNLAFQRQQISASSS-------SAL 536 SLYL+ +Q + +RSR +Q+Q GYS T W N S NLA +Q+ ++ S + Sbjct: 503 SLYLTASSQDYRDDRSRDSQLQLGYSNTFWRN-TSFNLAISQQKTGGANKIYFVDPGSGM 561 Query: 537 ELADGRQPSTSRPGSSVMLSLSIPLGKAGTERPVMSTSLVRTAAQDVLQSQVSGMLPGPH 596 ++G +R + +S+S PLG + + V + ++ + Q+ +SG + Sbjct: 562 PASNGANTLATRE-TVAQMSISFPLGGSSSAPYVSAGAVNSRTSGASYQTSLSGTMGSDQ 620 Query: 597 RLSYSVGANHASGGRQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAGGITGI 656 YSV +++L+G+L +L L+ + +R YWQ +AS Sbjct: 621 TAGYSVDVARNEPTNENTLSGSLQKQLPTTSLSGSASRSPGYWQGSAS------------ 668 Query: 657 ARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLSAYQRN 716 ARG++A H G+T GPYL DTFALIEA GA GA++ GQGA ID G+AL+P+L+ Y+ N Sbjct: 669 ARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVPTLTPYRYN 728 Query: 717 VVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLPMGADV 776 + L G + +E+ + +R + PYAG+T+K+ FRT G+ LI + +G LPMG V Sbjct: 729 TLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGSQLPMGTVV 788 Query: 777 LTEEG-------EVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTFQYDL-QGQDLE 828 G ++VGMVGQ SQAYLR++ L + WG+ +ERC YDL + D + Sbjct: 789 YNYNGKGTNDKNDIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYDLGKPTDND 848 Query: 829 QALLRLEAACVAA 841 + L +L+A CVA Sbjct: 849 KQLYKLDALCVAV 861 >YPO3879 [NU] COG3188 P pilus assembly protein, porin PapC Ype Yersinia pestis Length = 875 Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust. Identities = 331/865 (38%), Positives = 490/865 (56%), Gaps = 66/865 (7%) Query: 12 QQEQYLFLEALELASPINKGSLARFNRPGTIEPGRY-SVDVFLNGVFSHRRSLRF-DLFE 69 + + + F E+L L + G L + N+ +I G Y +VDV +N R S++F Sbjct: 37 EPQNFEFDESLFLGTKYASG-LTQLNKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDAN 95 Query: 70 GQGVAACFTAQ--DAALLNL-----------------RPELLGQLGQRECARIEELASGA 110 V C + + AA + L P +C + GA Sbjct: 96 SSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGA 155 Query: 111 SAVFEIADLRLNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRV-AQSSNS 169 S F+ A LRL +S+PQ+ L++ RGY++ + G+ + F+NYS + Y S Q + Sbjct: 156 SFRFDQAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRT 215 Query: 170 ATYGFT--NSGVNLGLWRLRQQGSMRY---DSQAGLAWNPVRTYAKRALPAWRSELTVGE 224 + +GF SG+NLGLW++RQQ ++RY DS + WN +RTY +R +P S+LT+GE Sbjct: 216 SDFGFIGLKSGINLGLWQVRQQSNVRYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGE 275 Query: 225 NFTTGKLLSGLAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTV 284 FT L +++ G ++++D RM P S+RG++P +RG A +NA VI+ Q REIY T V Sbjct: 276 TFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNARVIIRQNGREIYETNV 335 Query: 285 APGSFVIDDLYPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRD 344 APG FVI+DL+ TS GDL+V VIEA+GSR+ +VPFSA+P+SMRPG SRY+ +G +RD Sbjct: 336 APGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRD 395 Query: 345 -TETAALFLDTLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADT 403 T F D Y+RGL+N LT N G+RLA Y + + G L +G+LGLN +YSHA Sbjct: 396 FTNIDNYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKV 455 Query: 404 GHGNS-GGWMLGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLAS 462 + + GW + YS++F TGT FS+A YRYST GYR+L DV R + W Sbjct: 456 ENDKTQDGWRMQATYSQTFNQTGTTFSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTW--D 513 Query: 463 SSSYQQQSRFDMSVSQQLGSAGSLYLSGLTQTFYHNRSRITQMQFGYSTMWSNGMSMNLA 522 SS+Y+Q+S+F +++Q LG+ G LY S T +Y++ +R TQ+Q GYS + +S NLA Sbjct: 514 SSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGYSNSYQQ-ISYNLA 572 Query: 523 FQRQQ-ISASSSSALELADGRQP-STSRPGSS---VMLSLSIPLGKAGTERPVMSTSLVR 577 RQ+ + S+ + D + +T+R G++ ++SIPL G+ +S S R Sbjct: 573 VSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPL-NIGSNNQYLSMSASR 631 Query: 578 TAAQ-DVLQSQVSGMLPGPHRLSYSVGANHAS---GGRQDSLNGNLGARLSKADLNFNLA 633 + Q+ +SG + +Y++ A + G ++ N+ + A +N + + Sbjct: 632 NPKSGNNYQTSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYS 691 Query: 634 RGRDYWQAAASTSTWRAGGITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFN 693 RG +Y Q A ARGA +H G+T GPYLG+TF LIEA GA+GAR Sbjct: 692 RGNNYTQYGAG------------ARGAAVIHRQGVTLGPYLGETFGLIEANGAQGAR--- 736 Query: 694 GQGAVIDGNGFALLPSLSAYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTR 753 ID NGFAL+P+L+ Y N + L + G N +E+ E+Q V+PYAGA +K++F T Sbjct: 737 -----IDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETL 791 Query: 754 AGHALLIRLLRDEGEPLPMGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQ 813 G+A+LI+ EGE LP+GADV + E+VGMVGQG+Q Y R + L VRWG+ Sbjct: 792 TGYAVLIQA---EGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSG 848 Query: 814 ERCTFQYDLQGQDLEQALLRLEAAC 838 ++C Y QD EQ ++ + A+C Sbjct: 849 DQCQLPYAFNRQDTEQDIIHITASC 873 >XF0081 [NU] COG3188 P pilus assembly protein, porin PapC Xfa Xylella fastidiosa 9a5c Length = 901 Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust. Identities = 294/821 (35%), Positives = 452/821 (55%), Gaps = 51/821 (6%) Query: 33 LARFNRPGTIEPGRYSVDVFLNGVFSHRRSLRF-DLFEGQGVAACFTAQDAALLNLRPEL 91 L F+R + G Y D+++NG + RR + F + + + C T L + Sbjct: 116 LGMFSRGNPVIAGLYRADLYVNGQWKGRRDMEFRNTKDDKEAVTCMTLAMLDELGIDTSA 175 Query: 92 LGQ--LGQRECARIEELASGASAVFEIADLRLNVSVPQSQLKQVARGYVDPDLYDAGQSI 149 L + C I++ A A F++A RL+VS+PQ+ +++ ARGYV P L+D G + Sbjct: 176 LTDSAADMQACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYVSPSLWDHGVNA 235 Query: 150 GFVNYSISQYYSRVAQSSNS-----ATYGFTNSGVNLGLWRLRQQGSMRYDSQAGLAWNP 204 GF+ Y+ + Y R A + NS + Y NSG+NLG W+ R S + S G W Sbjct: 236 GFIGYAFNWYGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQN 295 Query: 205 VRTYAKRALPAWRSELTVGENFTTGKLLSGLAYQGVEISSDDRMLPDSLRGYAPVIRGTA 264 + TYA+RA P S LTVG+ +T+G+L + ++G+ +++DDRMLPDSLRGYAP++RG A Sbjct: 296 ISTYAQRAFPNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIA 355 Query: 265 RSNALVIVSQKAREIYRTTVAPGSFVIDDLYPTSYNGDLDVTVIEADGSRAQLSVPFSAL 324 +SNA V + Q + IY TTVAPG+FVIDDLYPT Y GDL VTV E DG + Q SVP+ ++ Sbjct: 356 QSNARVEIHQNGQLIYSTTVAPGAFVIDDLYPTGYGGDLQVTVYETDGRQQQFSVPYGSV 415 Query: 325 PESMRPGSSRYSLTLGRTRDTETA--ALFLDTLYQRGLSNALTGNVGLRLASGYQSAVLG 382 P+ +R GS RYSLT G+ R+ + L+ YQRG+SNALT G ++ Y +A+ G Sbjct: 416 PQMLRAGSQRYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGSTISQRYIAAIAG 475 Query: 383 STLAGRLGSLGLNLSYSHADTGHGNSGGWMLGMAYSRSFEDTGTQFSIASYRYSTAGYRE 442 + L+ +G+ L+ + + + G L ++YS+ T T ++A+YRYST+G+ Sbjct: 476 AGLSTPVGAFSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYG 535 Query: 443 LVDVLSERQSNRAATAWLASSSSYQQQSRFDMSVSQQLGSAGSLYLSGLTQTFYHNRSRI 502 L + + R L+++S Y+Q+S+ ++VSQQLG GSLYL+G + +++ R Sbjct: 536 LQEAIMAMDYERRG---LSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNT 592 Query: 503 TQMQFGYSTMWSNGMSMNLAFQRQQISASSSSALELADGRQPSTSRPGSSVMLSLSIPLG 562 Q Q GY+ + G+S L+ R QI + PS ++ ++ ++S+PLG Sbjct: 593 IQYQGGYNVSY-KGVSYGLSALRSQIPS------------MPSDTQ----MLFTVSVPLG 635 Query: 563 KAGTERPVMSTSLV--RTAAQDVLQSQVSGMLPGPHRLSYSVGANHASGGRQDSLNGNLG 620 KA PV+ TS + R D + + G L+Y + A+ A ++GN+ Sbjct: 636 KAN---PVIVTSQIGSRDGRYDNSRVSLVGASGKDSALTYGIAASDARNS-ATMIDGNVQ 691 Query: 621 ARLSKADLNFNLARGRDYWQAAASTSTWRAGGITGIARGALAVHGDGITFGPYLGDTFAL 680 R A L+ + + R+Y Q + S G++ +H T P GDT + Sbjct: 692 YRSRYAALSGSYSHNRNYNQMSLGAS------------GSIVLHSGVATLAPQRGDTMVI 739 Query: 681 IEAPGAKGARIFNGQGAVIDGNGFALLPSLSAYQRNVVELASAGSNSKSEILESQRIVIP 740 IEAP AKGAR+ N G ID G+A++P +S Y+ N + L G++ E+ S +++ P Sbjct: 740 IEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGTDPDVELETSSQLIAP 799 Query: 741 YAGATLKLRFRTRAGHALLIRLLRDEGEPLPMGADVLTEEGEVVGMVGQGSQAYLRSDST 800 YAGA K+ F TR G AL++ G+ LP GA V+ EG+ VG+V QGS Y+R+ Sbjct: 800 YAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVGLVAQGSLIYIRAKDP 859 Query: 801 RARLLVRWGDGQQERCTFQYDLQGQDLE---QALLRLEAAC 838 + RL ++WGD ++C +Y L + + LEA C Sbjct: 860 QGRLTIKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAIC 900 >STM0338 [NU] COG3188 P pilus assembly protein, porin PapC Sty Salmonella typhimurium LT2 Length = 853 Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust. Identities = 311/861 (36%), Positives = 462/861 (53%), Gaps = 55/861 (6%) Query: 5 LTPAAAAQQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVF-SHRRSL 63 + + +AQ E+Y F AL L ++ARFN T G Y DV++NG + ++ Sbjct: 18 IVCSGSAQGEEYYFDPAL-LQGATYGQNIARFNERQT-PSGDYLADVYVNGTLVTSSTNI 75 Query: 64 RFD-LFEGQGVAACF--TAQDAALLNLRPELLGQLGQRECARIEELASGASAVFEIADLR 120 RF+ + EGQ C + AA + P EC + E A F+ A LR Sbjct: 76 RFNAVKEGQQTEPCLPLSVMKAAQIKSLP---ATDAATECRPLREWVPHAGWQFDSATLR 132 Query: 121 LNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRVAQSSNSATYGFT--NSG 178 L +++P ++L RGY+ P +D+G F+ ++ + ++ S Y ++ N G Sbjct: 133 LLLTIPMTELTHKPRGYISPSEWDSGALALFLRHNTNWTHTENTDSHYRYQYLWSGLNMG 192 Query: 179 VNLGLWRLRQQGSMRY--DSQAGLAW--NPVRTYAKRALPAWRSELTVGENFTTGKLLSG 234 VNLGLW++R Q ++RY +Q+G AW N VRT+ +R + + S L++G+++T L Sbjct: 193 VNLGLWQVRHQSNLRYANSNQSGSAWRYNSVRTWVQRPVASVNSILSLGDSYTDSSLFGS 252 Query: 235 LAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDDL 294 L++ G ++ +D+RM P RGYAP +RG A S+A V+V Q + IY T V PG F IDDL Sbjct: 253 LSFNGAKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVKQLGKVIYETNVPPGPFYIDDL 312 Query: 295 YPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRDT-ETAALFLD 353 Y T Y GDL+V VIEA G ++ +VP+S++P+S+RPG+ YSL GR R + F + Sbjct: 313 YNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIENRFFE 372 Query: 354 TLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADTGHGN-SGGWM 412 +Q G++N +T N+G R+A YQ+ + G A +G+ GLN ++S+A H + GW Sbjct: 373 GTFQHGVNNTITLNLGSRIAQRYQAWLAGGVWATGMGAFGLNATWSNARAEHNDRQQGWR 432 Query: 413 LGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSRF 472 ++YS++F TGT +A+YRYST G+R+L DVL R+ + + S + Q++R Sbjct: 433 AELSYSKTFT-TGTNLVLAAYRYSTNGFRDLQDVLGVRREAKTGIDYY--SDTLHQRNRL 489 Query: 473 DMSVSQQLGSAGSLYLSGLTQTFYHNRSRITQMQFGYSTMWSN-GMSMNLAFQR-----Q 526 +VSQ LG G+L LS T +Y+N+SRITQ+Q GYS W N +N+A QR Sbjct: 490 SATVSQPLGRLGTLNLSASTADYYNNQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYD 549 Query: 527 QISASSSSALELADGRQPSTSRPGSSVMLSLSIPLGKAGTERPVMSTSLVRTAAQDVLQS 586 + + L+++ RQ T +++ ++SIPL G R ++ + +++ Sbjct: 550 RFYHGVNEPLDVSS-RQKYTE---TTMSFNVSIPL-DWGENRTSVAMNYNQSSQSRSSTV 604 Query: 587 QVSGMLPGPHRLSYSV--GANHASGGRQDS-----LNGNLGARLSKADLNFNLARGRDYW 639 ++G LS+SV G DS GNL L N +G +Y Sbjct: 605 SMTGSSGENSDLSWSVYGGYERYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQGDNYR 664 Query: 640 QAAASTSTWRAGGITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFNGQGAVI 699 Q S G L +H G+T GPY DTFALI A GA+GA + NGQGAV+ Sbjct: 665 QEGLGAS------------GTLVLHPGGLTAGPYTSDTFALIHADGAQGAIVQNGQGAVV 712 Query: 700 DGNGFALLPSLSAYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTRAGHALL 759 D G+A+LPSLS Y+ N V L + S +E+ + ++PYAGA ++ F T +G A+L Sbjct: 713 DRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISGKAVL 772 Query: 760 IRLLRDEGEPLPMGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTFQ 819 I + +G PMGADV EG +GMVGQ Q Y R LLVRWG G +RC Sbjct: 773 ISVKMPDGGIPPMGADVFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVA 832 Query: 820 YDLQGQDL--EQALLRLEAAC 838 Y L DL ++ L L C Sbjct: 833 YQL---DLHTKEPFLYLNKIC 850 >PA4084 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pseudomonas aeruginosa Length = 844 Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust. Identities = 298/840 (35%), Positives = 431/840 (51%), Gaps = 56/840 (6%) Query: 34 ARFNRPGTIEPGRYSVDVFLN-------------------GVFSHRRSLRFDLFEGQGVA 74 +RF R IEPGRY +D+ LN VF + R L E G+ Sbjct: 36 SRFERGDVIEPGRYRLDLLLNSRWRGVEEVELRRQPGRESAVFCYDRGL----LERAGID 91 Query: 75 ACFTAQDAALLNLRPELLGQLGQRECARIEELASGASAVFEIADLRLNVSVPQSQLK-QV 133 +A+ + R L L C +E GA +IA+ + VSVP L Sbjct: 92 LEKSARGQDRSSARDPLPEGL---HCDPLERYVPGARVKLDIAEQSIYVSVPSYYLSLDS 148 Query: 134 ARGYVDPDLYDAGQSIGFVNYSISQYYSRVAQSSNSATYGFTNSGVNLGLWRLRQQGSMR 193 ++ YVDP +D+G S +NY+ + + S ++ Y N+G N G RLR G+ Sbjct: 149 SKTYVDPASWDSGISAALLNYNSNLHVRENHGRSATSGYAGMNAGFNFGRARLRHNGTAT 208 Query: 194 YDSQAGLAWNPVRTYAKRALPAWRSELTVGENFTTGKLLSGLAYQGVEISSDDRMLPDSL 253 + + G + TY + LPAWR++L +GEN T+ + ++++GV++SSDDRMLPDSL Sbjct: 209 WSRRMGSHYQRSATYVQTDLPAWRAQLLLGENSTSSEFFDAVSFRGVQLSSDDRMLPDSL 268 Query: 254 RGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDDLYPTSYNGDLDVTVIEADGS 313 R YAPV+RGTA +NA V V Q+ IY TTVAPG+F +D+L SY GDL+V V EA G Sbjct: 269 RYYAPVVRGTASTNARVSVYQRGYLIYETTVAPGAFALDELQTASYGGDLEVRVTEASGE 328 Query: 314 RAQLSVPFSALPESMRPGSSRYSLTLGRTRDT--ETAALFLDTLYQRGLSNALTGNVGLR 371 VPF+ + +RPG++RYSLT GR D E L +YQRGL N +T G Sbjct: 329 VRSFIVPFATTVQLLRPGTTRYSLTAGRLNDPSLERRPNMLQGVYQRGLGNDVTAYAGGA 388 Query: 372 LASGYQSAVLGSTLAGRLGSLGLNLSYSHADT-GHGNSGGWMLGMAYSRSFEDTGTQFSI 430 Y S ++G+ L +G +++ + + G G +AYS++ +TGT FS+ Sbjct: 389 FTGSYMSGLMGAALNTPVGGFSGDVTLARTEVPGDDRLSGSSYRLAYSKNLPNTGTNFSL 448 Query: 431 ASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSRFDMSVSQQLGSAGSLYLSG 490 +YRYST GY L D + +R S S + ++R D ++SQQLG+ G+LYL+G Sbjct: 449 LAYRYSTGGYLGLRD--AAFMQDRVERGEPLESFS-RLRNRLDANISQQLGNGGNLYLNG 505 Query: 491 LTQTFYHNRSRITQMQFGYSTMWSNGMSMNLAFQRQQISASSSSALELADGRQPSTSRPG 550 +Q ++ R GYS W + +S +++ QR + S D R +++ Sbjct: 506 SSQRYWSGGGRAVNFSVGYSNQWRD-VSYSISAQRLR---SQYEGFSSGDRRGETSTL-- 559 Query: 551 SSVMLSLSIPLGKAGTERPVMSTSLVRTAAQDV-LQSQVSGMLPGPHRLSYSVGANHASG 609 L+LSIPLG AG P +S+ L R + L S VSGML SYS+ A+H Sbjct: 560 --FSLNLSIPLGGAGRGSPTLSSYLTRDSNSGTQLTSGVSGMLGKRGEASYSLSASHDRD 617 Query: 610 GRQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAGGITGIARGALAVHGDGIT 669 RQ S + +L RL + +L +L++G Y Q + A G L H GIT Sbjct: 618 SRQTSKSASLDYRLPQVELGSSLSQGPGYRQLSVK------------AAGGLVAHSGGIT 665 Query: 670 FGPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLSAYQRNVVELASAGSNSKS 729 LG+T L+ AP A+GA G+ ID +G+A++P+L YQ N V+L G + Sbjct: 666 AAQTLGETIGLVHAPNARGA-AAGYSGSRIDRHGYAVIPNLLPYQLNSVDLDPNGMADEI 724 Query: 730 EILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLPMGADVL-TEEGEVVGMVG 788 E+ S R V P AGA ++L + TR LL+ GEPLP A+VL G+ VG VG Sbjct: 725 ELRSSSRNVAPTAGAVVRLDYPTRVARPLLVDSRMPSGEPLPFAAEVLDAHSGQSVGAVG 784 Query: 789 QGSQAYLRSDSTRARLLVRWGDGQQERCTFQYDLQGQDLEQALLRLEAACVAAPRRAEFL 848 QGS+ LR + R + VRWG+ Q++C Y L ++ +L+L +A R L Sbjct: 785 QGSRLVLRVEQDRGSVRVRWGNEPQQQCLVDYALGPRETTPPVLQLACRPASAADRERTL 844 >YPO1709 [NU] COG3188 P pilus assembly protein, porin PapC Ype Yersinia pestis Length = 870 Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust. Identities = 293/873 (33%), Positives = 444/873 (50%), Gaps = 78/873 (8%) Query: 7 PAAAAQQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVFSHRRSLRFD 66 P++AA+ +Y+ L P++ R++ + PG VD++LN + R+ +RF Sbjct: 34 PSSAAENSEYVEFSDAFLRFPVDA---TRYSEGNPVSPGERQVDIYLNDQWIGRQEMRFA 90 Query: 67 LF--EGQGVAACFTAQ--------DAALLNLRPELLGQLGQRECARIEELASGASAVFEI 116 L E + CF + A L + +LL G C+ + L G +A+F+ Sbjct: 91 LPSPESKVATPCFDVKLFDELGVDTAKLSSDTVKLLESRG--ACSPLSRLLEGGNAIFDD 148 Query: 117 ADLRLNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRVAQSSNSATYGFTN 176 RL++ VPQ+ L + ARGYV P +D G + + Y + Y S S TY + Sbjct: 149 NQQRLDIQVPQAYLIRQARGYVHPKYWDDGVTAATLKYDYTGYRSN-QNDIGSQTYQYLG 207 Query: 177 --SGVNLGLWRLRQQGSMRYDSQAGLAWNPVRTYAKRALPAWRSELTVGENFTTGKLLSG 234 G+N WRL + ++ G + + TY +RA+P+ S++T+G++ T G++ Sbjct: 208 LLGGLNWQSWRLYYRSALNRSDSQGFDYQNLATYVERAVPSLYSKMTIGDSNTDGQVFDS 267 Query: 235 LAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIYRTTVAPGSFVIDDL 294 L+Y+G+E++SDDRM DS RGYAPV+RG AR+NA V+V Q+ R IY TTV PG FVIDDL Sbjct: 268 LSYRGIELTSDDRMYADSQRGYAPVVRGVARTNARVVVRQQGRPIYETTVPPGPFVIDDL 327 Query: 295 YPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTRD---TETAALF 351 YPT G+L+VT+ EADGS VPF+++ E +RPG++RYSL G RD + LF Sbjct: 328 YPTGQGGNLNVTITEADGSEQTFIVPFASIAELLRPGTTRYSLMAGEYRDNSMVDKPVLF 387 Query: 352 LDTLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHAD-TGHGNSGG 410 + T+ + GLSN LTGN G+ A GY SA G +G++ N++ + N G Sbjct: 388 MGTV-RHGLSNLLTGNGGMVAAEGYLSASAGLAFNTPVGAVAFNVTQAQTRLPNKDNQRG 446 Query: 411 WMLGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVL--------SERQSNRAATAWLAS 462 +GM Y++S +T T +IASY YS+ G+ + + E + + ++W Sbjct: 447 QSIGMTYAKSLPETNTNLTIASYHYSSNGFYTPAEAMRMRDYLQHGEVNNTQIDSSWPNG 506 Query: 463 SSSYQQQSRF------DMSVSQQLGSA-GSLYLSGLTQTFYHNRSRITQMQFGYSTMWSN 515 S Y ++ +S++Q L GS Y + Q ++ R+R QFGY+ + + Sbjct: 507 SDRYDDSFKYRRRNQAQVSIAQGLPDGYGSFYANANVQDYWDGRNRDMNFQFGYTNSYKS 566 Query: 516 GMSMNLAFQRQQISASSSSALELADGRQPSTSRPGSSVMLSLSIPLG-KAGTERPVMSTS 574 +S N+A R + S +L+ +SLSIPLG AG P +S+S Sbjct: 567 -LSYNVALNRLRDIPSGDWDNQLS---------------VSLSIPLGTHAGA--PRLSSS 608 Query: 575 LVRTAAQDVLQSQVSGMLPGPHRLSYSV-GANHAS--GGRQDSLNGNLGARLSKADLNFN 631 T +Q+ VSG ++ SY V AN+ S G ++L N + A + + Sbjct: 609 YSNTRGSSAIQTGVSGSAGEDNQFSYGVSAANNRSDENGSYNTLGANGSWQAPYATVGGS 668 Query: 632 LARGRDYWQAAASTSTWRAGGITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARI 691 ++ Y QA+AS S G + + G+ P LGDT +IEAP A GAR+ Sbjct: 669 YSKSNSYDQASASLS------------GGVVAYRGGVILAPALGDTVGIIEAPDAAGARV 716 Query: 692 FNGQGAVIDGNGFALLPSLSAYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFR 751 + +D G A+LP LS Y++N VEL G ++ E + + V P AGA + F Sbjct: 717 GSYSSMYLDRRGRAILPYLSPYRQNEVELDPKGLSADVEFKSTSQKVAPTAGAVALVTFE 776 Query: 752 TRAGHALLIRLLRDEGEPLPMGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDG 811 T G+++L+R + PLP GA+V G VG + QG QA +R + L V WGDG Sbjct: 777 TSTGYSVLVRGHLADNTPLPFGAEVKDGGGTRVGFIAQGGQAMVRVNQQAGNLRVIWGDG 836 Query: 812 QQERCTFQYDLQGQDLEQALL------RLEAAC 838 E C+F Y L +L + L RLE C Sbjct: 837 IGESCSFDYKLPEGNLVKGHLVKGDYRRLEVIC 869 >STM0546 [NU] COG3188 P pilus assembly protein, porin PapC Sty Salmonella typhimurium LT2 Length = 870 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 286/895 (31%), Positives = 426/895 (47%), Gaps = 118/895 (13%) Query: 4 PLTPAAAAQQEQYLFLEALELASPINKGSLARFNRPGTIEPGRYSVDVFLNGVFSHRRSL 63 PLT ++ E Y F A A + L+RF + PG Y VD++ N F + + Sbjct: 31 PLT----SRGESY-FNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDI 85 Query: 64 RFDL------FEGQGVAACFTAQDAALLNLRPELLGQLG-------------QRECARIE 104 RF+ + G+ CFT PE + +LG C + Sbjct: 86 RFEAGAVGTGDKSGGLMPCFT----------PEWIKRLGVNTAAFPVSDKGVDTTCIHLP 135 Query: 105 ELASGASAVFEIADLRLNVSVPQSQLKQVARGYVDPDLYDAGQSIGFVNYSISQYYSRVA 164 E GA F+ A +RLN+S+PQ+ L ARGY+ P+ +D G +NYS + + Sbjct: 136 EKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTG-----S 190 Query: 165 QSSNSATYGFTN-SGVNLGLWRLRQQGSMRYDSQAGLA---WNPVRTYAKRALPAWRSEL 220 + ++S +Y + SG+N G WRLR G+ Y G WN + T+ +RA+ +SEL Sbjct: 191 RGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSEL 250 Query: 221 TVGENFTTGKLLSGLAYQGVEISSDDRMLPDSLRGYAPVIRGTARSNALVIVSQKAREIY 280 +G++ T + + ++G + S D M PDSL+GYAP +RG AR+ A + + Q IY Sbjct: 251 VMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIY 310 Query: 281 RTTVAPGSFVIDDLYPTSYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLG 340 ++ V+PG+F I DL PTS +GDL+VTV E DGS+ + +VP+S +P R G +Y L G Sbjct: 311 QSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAG 370 Query: 341 RTR---DTETAALFLDTLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGR-LGSLG-LN 395 R +++ F GL LT G +LA Y++ V+G AGR LG G ++ Sbjct: 371 DFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVG---AGRNLGDWGAVS 427 Query: 396 LSYSHA------DTGHGNSGGWMLGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVL-- 447 + +HA D+ H G L Y++S + GT F + YRYST G+ L DV Sbjct: 428 VDVTHARSQLADDSTH---QGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYR 484 Query: 448 ----------SERQSNRAATAWLASSSSYQQQSRFDMSVSQQLGSAGSLYLSGLTQTFYH 497 S+ + ++ A + Y ++ RF +++SQ LG GSLYLSG Q +++ Sbjct: 485 SMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWN 544 Query: 498 NRSRITQMQFGYSTMWSNGMSMNLAFQRQQISASSSSALELADGRQPSTSRPGSSVMLSL 557 T Q GY++ W G+S +L++ + SS + LA ++ Sbjct: 545 TADTNTWYQLGYASGW-QGISYSLSWSWSESVGSSGADRILA---------------FNM 588 Query: 558 SIPLGKAGTERPVMSTSLVRTAA----------QDVLQSQVSGMLPGPHRLSYSVG-ANH 606 S+P R T L RT A + Q+ V G L LSYSV Sbjct: 589 SVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRS 648 Query: 607 ASGGRQDSLNGNLGARLSKADLNFNLARGR-DY-WQAAASTSTWRAGGITGIARGALAVH 664 +S G S + + A + +N R + DY WQ +GG+ G H Sbjct: 649 SSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQL--------SGGVVG--------H 692 Query: 665 GDGITFGPYLGDTFALIEAPGAKGARIFNGQGAVIDGNGFALLPSLSAYQRNVVELASAG 724 DGITF LGDT LI+APGAKG RI N G D G+A++P + Y+ N V L + Sbjct: 693 ADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYATVYRYNRVALDTNT 752 Query: 725 SNSKSEILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEPLPMGADVLTEEGEVV 784 ++ +++ + V+P GA ++ F TR G +I R G PLP GA V + Sbjct: 753 MDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAII-TARLGGRPLPFGAIVRETASGIT 811 Query: 785 GMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTFQYDLQGQDLEQALLRLEAACV 839 MVG Q YL + L ++WG+G+ RC Y L L+QA+ A C+ Sbjct: 812 SMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCI 866