BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0081.p         (305 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1622_1 [T] COG0642 Signal transduction histidine kinase Rso R...   149   1e-35

>RSp1622_1 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 869

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 149/275 (54%), Gaps = 9/275 (3%)

Query: 1   MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60
           MP+++L  + RY RR+LYGC   LS+AI+ A+L LG     Q+ +RQ+  F     +++ 
Sbjct: 1   MPQRLLTKTGRYSRRVLYGCTAALSIAIVGAVLLLGRGIIDQYGDRQVARFVRTSGEVRT 60

Query: 61  EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVR 119
           EVD L+AR+ QFA++Y  + +L + +++    Y   + +++  + + A+LT  P +L+  
Sbjct: 61  EVDGLSARLAQFADLYEGVWNLRQNDVVPTRRYAGKLAADRGATVTGADLTATPVTLISS 120

Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179
            +  AD  RLA  L +LR  S  P+ +  + GVTLDGF+YT DA FLA  P L  A+   
Sbjct: 121 LDRPADGARLAMALRVLRDVSGAPLMDAQKLGVTLDGFLYTPDATFLAAFPALRPADLRS 180

Query: 180 VRQQGVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAV 239
            R+QG   FI    A V    A+    A R     G+R LW  PA        +V++L V
Sbjct: 181 AREQGPQPFIRERIAAVEQRIASSAPEAVR-----GRRPLWY-PA-DETNGHASVSQLIV 233

Query: 240 RIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274
            +  D     T   ++P +QF +FF+   SR RP 
Sbjct: 234 PMYRDNARVLTIALTLPDAQFTRFFLRKESR-RPG 267