BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0071.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0722 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralston...    82   3e-16

>RSc0722 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralstonia
           solanacearum
          Length = 203

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 33/187 (17%)

Query: 2   DRTAGERMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLAR 61
           D  +  R  ARGFTL+ELMV + I S++L    P+      +QRL++AA+     +  AR
Sbjct: 4   DSLSFRRRSARGFTLLELMVTIAIISIMLVLVAPSFSDFLRKQRLLSAADSVASAIGQAR 63

Query: 62  AQALRHARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH- 108
            +AL  +    + P +G  W  GW++   GQ            +L +  AL  G+ V + 
Sbjct: 64  TRALAQSAYVTIAPING-DWANGWRVFSEGQNPDGIYNPSTDTLLNQYDALTNGLKVTYN 122

Query: 109 ---------TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRAR 149
                     A G  L Y PNG       QP    +++ +     G +R++++N LGRAR
Sbjct: 123 STAYVGGSGNASGNYLIYSPNGYTASKIKQPQVTAAFNVAYQDGTGPARIIIVNALGRAR 182

Query: 150 VCNPARE 156
            C+P  E
Sbjct: 183 TCDPNDE 189