BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0047.p (211 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3691 Non COG 133 3e-31 ZyqjI [K] COG1695 Predicted transcriptional regulators EcZ Esche... 111 1e-24 ECs3953 [K] COG1695 Predicted transcriptional regulators Ecs Esc... 111 1e-24 yqjI [K] COG1695 Predicted transcriptional regulators Eco Escher... 111 1e-24 STM3215 [K] COG1695 Predicted transcriptional regulators Sty Sal... 107 1e-23 mll2459 [K] COG1695 Predicted transcriptional regulators Mlo Mes... 105 6e-23 YPO0864 [K] COG1695 Predicted transcriptional regulators Ype Yer... 90 3e-18 RSp0258 [K] COG1695 Predicted transcriptional regulators Rso Ral... 84 3e-16 ML2313 [K] COG1695 Predicted transcriptional regulators Mle Myco... 68 1e-11 SSO0038 [K] COG1695 Predicted transcriptional regulators Sso Sul... 65 1e-10 >CC3691 Non COG Length = 152 Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 3/153 (1%) Query: 59 RMFEQGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASV 118 R F+ G LR+V+L L+ +KP HGY++IKAIE GG Y+PSPGV+YPTLTLLEE+GY Sbjct: 3 RFFDHGDLRLVVLKLIADKPSHGYELIKAIETAAGGAYTPSPGVVYPTLTLLEELGYVVA 62 Query: 119 QGEDGGKKLYTLSPEGQAHLEEKDNAQALQQVLRKFELRRQERPDADSPELQRAVQNFRM 178 GGKKLYT++PEG+A L N Q ++ + + A SP++ RA +N + Sbjct: 63 SEAGGGKKLYTITPEGEAFL--VSNEQPVRSLFERMA-EAASTSAAFSPQILRARENLKT 119 Query: 179 ALHTRLAKGKLAREELHAIIDIIDRAAVAVERV 211 AL +L G+L E++ + +D AA +E + Sbjct: 120 ALRLKLHGGQLTAEQIAGVAKALDDAAATIETL 152 >ZyqjI [K] COG1695 Predicted transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 207 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Query: 64 GALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDG 123 G LR+V+L +L HGY++IKAIE L G Y+PSPGVIYPTL L+E +++ E+G Sbjct: 61 GELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEG 120 Query: 124 GKKLYTLSPEGQAHLEEKDNAQALQQVLRKFELRRQERPDADSPELQRAVQNFRMALHTR 183 GKK L+ +G LEE N + ++ + + + R +P+++RA+ NF+ L+ R Sbjct: 121 GKKQIALTEQGAQWLEE--NREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLNLR 178 Query: 184 LAKGKLAREELHAIIDIIDRAAVAVERV 211 + + + ++ II +IDRAA + ++ Sbjct: 179 VNQSDITDAQIKKIIAVIDRAAFDITQL 206 >ECs3953 [K] COG1695 Predicted transcriptional regulators Ecs Escherichia coli O157:H7 Length = 207 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Query: 64 GALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDG 123 G LR+V+L +L HGY++IKAIE L G Y+PSPGVIYPTL L+E +++ E+G Sbjct: 61 GELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEG 120 Query: 124 GKKLYTLSPEGQAHLEEKDNAQALQQVLRKFELRRQERPDADSPELQRAVQNFRMALHTR 183 GKK L+ +G LEE N + ++ + + + R +P+++RA+ NF+ L+ R Sbjct: 121 GKKQIALTEQGAQWLEE--NREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLNLR 178 Query: 184 LAKGKLAREELHAIIDIIDRAAVAVERV 211 + + + ++ II +IDRAA + ++ Sbjct: 179 VNQSDITDAQIKKIIAVIDRAAFDITQL 206 >yqjI [K] COG1695 Predicted transcriptional regulators Eco Escherichia coli K12 Length = 207 Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Query: 64 GALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDG 123 G LR+V+L +L HGY++IKAIE L G Y+PSPGVIYPTL L+E +++ E+G Sbjct: 61 GELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEG 120 Query: 124 GKKLYTLSPEGQAHLEEKDNAQALQQVLRKFELRRQERPDADSPELQRAVQNFRMALHTR 183 GKK L+ +G LEE N + ++ + + + R +P+++RA+ NF+ L R Sbjct: 121 GKKQIALTEQGAQWLEE--NREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLR 178 Query: 184 LAKGKLAREELHAIIDIIDRAAVAVERV 211 + + ++ ++ II +IDRAA + ++ Sbjct: 179 VNQSDISDAQIKKIIAVIDRAAFDITQL 206 >STM3215 [K] COG1695 Predicted transcriptional regulators Sty Salmonella typhimurium LT2 Length = 215 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 2/145 (1%) Query: 64 GALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDG 123 G LR+V+L +L HGY++IKAIE L GGGY+PS GVIYPTL L++ + ++ E+G Sbjct: 69 GELRLVILDILTRDASHGYELIKAIENLTGGGYTPSAGVIYPTLDFLQDQQFITISDEEG 128 Query: 124 GKKLYTLSPEGQAHLEEKDNAQALQQVLRKFELRRQERPDADSPELQRAVQNFRMALHTR 183 G+K ++ G L+E N + L + + + R +P+++RA+ NF+ L R Sbjct: 129 GRKKIAITANGAQWLDE--NREHLTHIQARLKARCVGMELRKNPQMKRALDNFKAVLDLR 186 Query: 184 LAKGKLAREELHAIIDIIDRAAVAV 208 + + ++ II +IDRAA+ + Sbjct: 187 INHSDINDAQIKRIIGVIDRAALEI 211 >mll2459 [K] COG1695 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 180 Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 3/100 (3%) Query: 56 RGARMFEQGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGY 115 R RM G L+++ L LL E PRHGYD+IKA+E+ G YSPSPGV+YPTLT LEE GY Sbjct: 3 RAGRMLADGDLKLITLSLLAEAPRHGYDIIKALEERTSGIYSPSPGVVYPTLTFLEEAGY 62 Query: 116 ASVQGEDGGKKLYTLSPEGQAHLEEKDNAQALQQVLRKFE 155 A V +G KK+++++ GQAHL DN + + VL E Sbjct: 63 A-VSSSEGNKKVFSITEAGQAHL--ADNREMIDGVLDHLE 99 >YPO0864 [K] COG1695 Predicted transcriptional regulators Ype Yersinia pestis Length = 226 Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 3/93 (3%) Query: 59 RMFEQGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASV 118 R+FE G LR+V+L LL + P HGY++IKAIE+ G Y PSPGVIYPTLTLLEE + + Sbjct: 57 RLFEHGDLRVVLLALLNKTPSHGYELIKAIEEASSGLYVPSPGVIYPTLTLLEEQDFVTP 116 Query: 119 QGEDGGKKLYTLSPEGQAHLEEKDNAQALQQVL 151 G+K Y ++ G+ L++ QA+ V+ Sbjct: 117 VATGNGRKSYQITDAGKFELQKN---QAMVDVI 146 >RSp0258 [K] COG1695 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 218 Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 20/146 (13%) Query: 75 QEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDGGKKLYTLSPEG 134 ++ PRHGY++IKA+E+ G Y+PSPG++YP L+ LE+ G+ASV E G KK Y ++PEG Sbjct: 70 KDAPRHGYELIKAVEEHSLGFYAPSPGMVYPALSYLEDHGFASVVAE-GNKKRYAITPEG 128 Query: 135 QAHLEEKDN-AQALQQVLRKFELRRQ---------------ERPDADSPELQRAVQNFRM 178 A L E+ A A+ LR R Q + DA S L+ A + Sbjct: 129 AAWLAERQQAADAILAQLRAMGERMQRMNEAMAFDRDTEAADWSDAGSDPLRTARWRLKF 188 Query: 179 ALHTRLAKGKLAREELHAIIDIIDRA 204 AL + K +REE + DI+ RA Sbjct: 189 AL---MEKRFASREEQQRVADILLRA 211 >ML2313 [K] COG1695 Predicted transcriptional regulators Mle Mycobacterium leprae Length = 200 Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%) Query: 66 LRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGEDGGK 125 +R +L LL E+P HGY MI+ I + G + PSPG +YPTL LL + + DG K Sbjct: 62 VRAAILMLLTERPMHGYQMIQQIAERSNGIWRPSPGSVYPTLQLLSDKNLITASATDGSK 121 Query: 126 KLYTLSPEGQA 136 KL+ L+ +G+A Sbjct: 122 KLFELTDDGRA 132 >SSO0038 [K] COG1695 Predicted transcriptional regulators Sso Sulfolobus solfataricus Length = 148 Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 14/130 (10%) Query: 61 FEQGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQG 120 ++GAL+ ++L L E+P Y++IK IE+ G Y PS G +YP L L E V+ Sbjct: 10 LKKGALKYLVLESLNERPMRTYEIIKTIEKKFEGSYRPSTGSVYPVLKSLVEKNLVEVKV 69 Query: 121 EDGGKKLYTLSPEGQAHLEEKDNA-------------QALQQVLRKFELRRQERPDADSP 167 E+ KK+Y ++ +G+ L+E N Q LQ++L+ R D Sbjct: 70 EN-NKKIYIITEKGKNELQEIKNKSLKLLGDNTKFSRQILQELLQIAFYLYDNRSKIDEN 128 Query: 168 ELQRAVQNFR 177 +Q+ ++ R Sbjct: 129 NIQKIIEYLR 138