BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0018.p (382 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1288 [K] COG0195 Transcription elongation factor Rso Ralstoni... 471 e-132 NMB1642 [K] COG0195 Transcription elongation factor Nme Neisseri... 385 e-107 NMA1896 [K] COG0195 Transcription elongation factor NmA Neisseri... 385 e-107 XF0234 [K] COG0195 Transcription elongation factor Xfa Xylella f... 385 e-106 PA4745 [K] COG0195 Transcription elongation factor Pae Pseudomon... 368 e-101 VC0642 [K] COG0195 Transcription elongation factor Vch Vibrio ch... 355 1e-97 nusA [K] COG0195 Transcription elongation factor Eco Escherichia... 350 2e-96 ZnusA [K] COG0195 Transcription elongation factor EcZ Escherichi... 350 2e-96 ECs4050 [K] COG0195 Transcription elongation factor Ecs Escheric... 350 2e-96 STM3287 [K] COG0195 Transcription elongation factor Sty Salmonel... 348 1e-95 >RSc1288 [K] COG0195 Transcription elongation factor Rso Ralstonia solanacearum Length = 491 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 236/338 (69%), Positives = 277/338 (81%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 +TGTIKR ++ I+ESG++EA L RDQMIPKENLR GDRVRAYIL VDR+ARGPQ+ LS Sbjct: 141 MTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRAYILNVDRTARGPQIELS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RT PEF++KLFE EVPE+EQG LEIK+AARDPGVRAKIAV DKRIDPIGTCVG+RG+R Sbjct: 201 RTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAHDKRIDPIGTCVGVRGTR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 V AV E+GGE VDIVLWSEDPAQFVIGALAPA V SIVVDEEKH+MDVVVDEENLA+AI Sbjct: 261 VTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEEKHSMDVVVDEENLAVAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA+ELT WQINIMT ESA K A E++ +R LFMEKLDVD+EVADIL+EEGF Sbjct: 321 GRSGQNVRLASELTSWQINIMTPAESAQKQAEESSTVRKLFMEKLDVDEEVADILIEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEE+AYVP+ EMLEIE+FDE+TVNELRNRARD L+T +A EE +E + ++L + EGL Sbjct: 381 TSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAKEEKVEKVSQDLRDLEGL 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 L GKL ++T A LA DE + + E+A Sbjct: 441 TPELIGKLAEGNIQTRDDLAELAVDELVDMTGVDEEQA 478 >NMB1642 [K] COG0195 Transcription elongation factor Nme Neisseria meningitidis MC58 Length = 500 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/342 (57%), Positives = 261/342 (76%), Gaps = 4/342 (1%) Query: 1 VTGTIKRMERGDAIIE--SGKIEARLPRDQMIPKENLRIGDRVRAYILRVDR--SARGPQ 56 V+GT+KR+ER I+E +GK++A +PRDQMIP+EN R GDR+RA LRV+ + Q Sbjct: 143 VSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQ 202 Query: 57 VILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGM 116 VILSRT+ +F++KL+ EVPEI G LEI++ ARDPG RAK+AV D+RIDP GTC+G+ Sbjct: 203 VILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGV 262 Query: 117 RGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENL 176 RGSRV AV+ EL GER+D+VLWS +PAQFV+ AL+PA V+ IV+DE+KHA+DV+V E+ L Sbjct: 263 RGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQL 322 Query: 177 AIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILV 236 A+AIGRGGQNVRLA++LT WQ+NIMT+ E+ +++AAE A IR LFM+ L+VD+E AD+LV Sbjct: 323 ALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLV 382 Query: 237 EEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELIN 296 +EGF+TLEE+AYVP E+L IE FDEE V+ LRNRARDA++T AIA+EE L + +++ N Sbjct: 383 QEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRN 442 Query: 297 FEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 EG+D + L AG+ T A LA DE I + E A Sbjct: 443 LEGIDADMLRSLAEAGITTRDDLAELAVDELIEITGVNEETA 484 >NMA1896 [K] COG0195 Transcription elongation factor NmA Neisseria meningitidis Z2491 Length = 505 Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/342 (57%), Positives = 261/342 (76%), Gaps = 4/342 (1%) Query: 1 VTGTIKRMERGDAIIE--SGKIEARLPRDQMIPKENLRIGDRVRAYILRVDR--SARGPQ 56 V+GT+KR+ER I+E +GK++A +PRDQMIP+EN R GDR+RA LRV+ + Q Sbjct: 148 VSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQ 207 Query: 57 VILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGM 116 VILSRT+ +F++KL+ EVPEI G LEI++ ARDPG RAK+AV D+RIDP GTC+G+ Sbjct: 208 VILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGV 267 Query: 117 RGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENL 176 RGSRV AV+ EL GER+D+VLWS +PAQFV+ AL+PA V+ IV+DE+KHA+DV+V E+ L Sbjct: 268 RGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQL 327 Query: 177 AIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILV 236 A+AIGRGGQNVRLA++LT WQ+NIMT+ E+ +++AAE A IR LFM+ L+VD+E AD+LV Sbjct: 328 ALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLV 387 Query: 237 EEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELIN 296 +EGF+TLEE+AYVP E+L IE FDEE V+ LRNRARDA++T AIA+EE L + +++ N Sbjct: 388 QEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRN 447 Query: 297 FEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 EG+D + L AG+ T A LA DE I + E A Sbjct: 448 LEGIDADMLRSLAEAGITTRDDLAELAVDELIEITGVNEETA 489 >XF0234 [K] COG0195 Transcription elongation factor Xfa Xylella fastidiosa 9a5c Length = 503 Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/330 (58%), Positives = 248/330 (75%), Gaps = 3/330 (0%) Query: 1 VTGTIKRMERGDAIIE-SGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 VTG +KR+ERG+ ++ G EA +P+D+ IP++ +R GDRVR Y+ V +RGPQ+ + Sbjct: 142 VTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDRVRGYLAEVRSESRGPQLFI 201 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 SR+APEF+++LF+LEVPE+ QG +EIK ARDPG RAKIAV D R DPIG C+GMRGS Sbjct: 202 SRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAVIAHDNRTDPIGACIGMRGS 261 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+ EL GERVDIVLW+E+PA FVI A+APA V SI+VDEEKH+MD+ V E+ LA A Sbjct: 262 RVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVDEEKHSMDLAVAEDRLAQA 321 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IG+GGQNVRLA+ LT WQ+N+MTAE+ A KS AE R LFME+L+VD+E+A ILV EG Sbjct: 322 IGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRLFMERLEVDEEIASILVMEG 381 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLE--GMEEELINF 297 F+T+EEIAYVP+ E+L +E FDE+ V ELR RARDAL+ A+A EEGLE G +L+ Sbjct: 382 FNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAALAEEEGLEHSGPAPDLLEL 441 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEF 327 G+D + A L GV+T + LA DE Sbjct: 442 NGMDEITAHALAAHGVRTSEDLSDLAADEI 471 >PA4745 [K] COG0195 Transcription elongation factor Pae Pseudomonas aeruginosa Length = 493 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/341 (54%), Positives = 253/341 (74%), Gaps = 3/341 (0%) Query: 1 VTGTIKRMERGDAIIESGK-IEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 ++GT+K++ R + I++ G EA L RDQ+IP+E R+G RVRA + + RGPQ++L Sbjct: 140 ISGTVKKVTRDNVIVDLGNNAEALLARDQIIPRETFRVGTRVRALLKEIRTENRGPQLVL 199 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 SRTAPE +++LF +EVPEI + +++ +AARDPG RAKIAV + DKRIDP G C+GMRGS Sbjct: 200 SRTAPEMLIELFRIEVPEIAEQLIDVMAAARDPGSRAKIAVRSKDKRIDPQGACIGMRGS 259 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+GE+GGERVDIVLW ++PAQFVI A+APA V +I+VDE+ H MD+ V E+NLA A Sbjct: 260 RVQAVSGEIGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDEDTHTMDIAVAEDNLAQA 319 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IGR GQNVRLA++LT W +N+MT + K AET I F+++LDVD+E+A +LVEEG Sbjct: 320 IGRSGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDILQRFVDELDVDEELAQVLVEEG 379 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--EELINF 297 F+TLEEIAYVP+ EML I+ FDE+ VNELR+RA+D L+T+AIA+EE L + E+L++ Sbjct: 380 FTTLEEIAYVPMEEMLSIDGFDEDIVNELRSRAKDRLLTKAIATEEKLADAQPAEDLLSL 439 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 +G+ + LA L L GV T A + D+ I + ERA Sbjct: 440 DGMSKELALDLALRGVTTREDLAEQSIDDLLDIDGMDEERA 480 >VC0642 [K] COG0195 Transcription elongation factor Vch Vibrio cholerae Length = 495 Score = 355 bits (911), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 180/341 (52%), Positives = 248/341 (72%), Gaps = 3/341 (0%) Query: 1 VTGTIKRMERGDAIIESGK-IEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 VTG +K++ R I++ G EA + R+ +P+EN R GDRVR + +V ARG Q+ + Sbjct: 138 VTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLLYKVAPEARGFQLFI 197 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 +R+ PE + +LF +EVPEI + +E+K+AARDPG RAKIAV T DKRIDP+G CVGMRG+ Sbjct: 198 TRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGA 257 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+GELGGER+DIVLW ++PAQFVI A+APA+V SI++DE+ H+MD+ V+ +NLA A Sbjct: 258 RVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAHSMDIAVEADNLAQA 317 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IGR GQNVRLA++LT W++N+MT + K E+ FM+ LD++Q+ A++LVEEG Sbjct: 318 IGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFAELLVEEG 377 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--EELINF 297 FSTLEEIAYVP+NE+L+++ DE+ +ELR+RA++AL T A+A EE EG+E E+L+ Sbjct: 378 FSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEESFEGLEPAEDLLAL 437 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 GL+R +A KL GV TL A D+ I L +RA Sbjct: 438 AGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRA 478 >nusA [K] COG0195 Transcription elongation factor Eco Escherichia coli K12 Length = 495 Score = 350 bits (899), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 183/341 (53%), Positives = 242/341 (70%), Gaps = 3/341 (0%) Query: 1 VTGTIKRMERGDAIIESGK-IEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 +TG +K++ R + ++ G EA + R+ M+P+EN R GDRVR + V ARG Q+ + Sbjct: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFV 197 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 +R+ PE +++LF +EVPEI + +EIK+AARDPG RAKIAV T DKRIDP+G CVGMRG+ Sbjct: 198 TRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGA 257 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V SIVVDE+KH MD+ V+ NLA A Sbjct: 258 RVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQA 317 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IGR GQNVRLA++L+ W++N+MT ++ K AE F + LD+D++ A +LVEEG Sbjct: 318 IGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEG 377 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--EELINF 297 FSTLEE+AYVP+ E+LEIE DE TV LR RA++AL T A A EE L + ++L+N Sbjct: 378 FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNL 437 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 EG+DR LA KL GV TL A D+ I L E+A Sbjct: 438 EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478 >ZnusA [K] COG0195 Transcription elongation factor EcZ Escherichia coli O157:H7 EDL933 Length = 495 Score = 350 bits (899), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 183/341 (53%), Positives = 242/341 (70%), Gaps = 3/341 (0%) Query: 1 VTGTIKRMERGDAIIESGK-IEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 +TG +K++ R + ++ G EA + R+ M+P+EN R GDRVR + V ARG Q+ + Sbjct: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFV 197 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 +R+ PE +++LF +EVPEI + +EIK+AARDPG RAKIAV T DKRIDP+G CVGMRG+ Sbjct: 198 TRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGA 257 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V SIVVDE+KH MD+ V+ NLA A Sbjct: 258 RVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQA 317 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IGR GQNVRLA++L+ W++N+MT ++ K AE F + LD+D++ A +LVEEG Sbjct: 318 IGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEG 377 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--EELINF 297 FSTLEE+AYVP+ E+LEIE DE TV LR RA++AL T A A EE L + ++L+N Sbjct: 378 FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNL 437 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 EG+DR LA KL GV TL A D+ I L E+A Sbjct: 438 EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478 >ECs4050 [K] COG0195 Transcription elongation factor Ecs Escherichia coli O157:H7 Length = 495 Score = 350 bits (899), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 183/341 (53%), Positives = 242/341 (70%), Gaps = 3/341 (0%) Query: 1 VTGTIKRMERGDAIIESGK-IEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVIL 59 +TG +K++ R + ++ G EA + R+ M+P+EN R GDRVR + V ARG Q+ + Sbjct: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFV 197 Query: 60 SRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGS 119 +R+ PE +++LF +EVPEI + +EIK+AARDPG RAKIAV T DKRIDP+G CVGMRG+ Sbjct: 198 TRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGA 257 Query: 120 RVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIA 179 RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V SIVVDE+KH MD+ V+ NLA A Sbjct: 258 RVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQA 317 Query: 180 IGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEG 239 IGR GQNVRLA++L+ W++N+MT ++ K AE F + LD+D++ A +LVEEG Sbjct: 318 IGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEG 377 Query: 240 FSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--EELINF 297 FSTLEE+AYVP+ E+LEIE DE TV LR RA++AL T A A EE L + ++L+N Sbjct: 378 FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNL 437 Query: 298 EGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 EG+DR LA KL GV TL A D+ I L E+A Sbjct: 438 EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478 >STM3287 [K] COG0195 Transcription elongation factor Sty Salmonella typhimurium LT2 Length = 500 Score = 348 bits (893), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 182/346 (52%), Positives = 242/346 (69%), Gaps = 8/346 (2%) Query: 1 VTGTIKRMERGDAIIE------SGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARG 54 VTG +K++ R + +E +G EA + R+ M+P+EN R GDR+R + V ARG Sbjct: 138 VTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARG 197 Query: 55 PQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCV 114 Q+ ++R+ PE +++LF +EVPEI + +EIK+AARDPG RAKIAV T DKRIDP+G CV Sbjct: 198 AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACV 257 Query: 115 GMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEE 174 GMRG+RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V SIVVDE+KH MD+ V+ Sbjct: 258 GMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAG 317 Query: 175 NLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADI 234 NLA AIGR GQNVRLA++L+ W++N+MT ++ K AE +F + LD+D+E A + Sbjct: 318 NLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATV 377 Query: 235 LVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGME--E 292 LVEEGFSTLEE+AYVP+ E+LEI+ DE TV LR RA++AL T A E L + + Sbjct: 378 LVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPAD 437 Query: 293 ELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA 338 +L+N EGLDR +A KL GV TL A D+ I L E+A Sbjct: 438 DLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKA 483