BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0016.p (130 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1290 [J] COG0858 Ribosome-binding factor A Rso Ralstonia sola... 141 4e-34 PA4743 [J] COG0858 Ribosome-binding factor A Pae Pseudomonas aer... 105 2e-23 NMA1586 [J] COG0858 Ribosome-binding factor A NmA Neisseria meni... 104 4e-23 NMB1373 [J] COG0858 Ribosome-binding factor A Nme Neisseria meni... 103 1e-22 PM0757 [J] COG0858 Ribosome-binding factor A Pmu Pasteurella mul... 100 8e-22 HI1288 [J] COG0858 Ribosome-binding factor A Hin Haemophilus inf... 98 4e-21 YPO3495 [J] COG0858 Ribosome-binding factor A Ype Yersinia pestis 95 5e-20 SA1113 [J] COG0858 Ribosome-binding factor A Sau Staphylococcus ... 92 4e-19 STM3285 [J] COG0858 Ribosome-binding factor A Sty Salmonella typ... 90 1e-18 rbfA [J] COG0858 Ribosome-binding factor A Eco Escherichia coli K12 89 3e-18 >RSc1290 [J] COG0858 Ribosome-binding factor A Rso Ralstonia solanacearum Length = 123 Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 3/125 (2%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 M K S S GR LR+ADQIQRDL+ELI E+K+P +G++T+ V +TPDYAHAK++FT L Sbjct: 1 MPKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVL 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 +A A L + GYL + L +RL IHT+P LHF +D S RGIEMSRLID+ANA Sbjct: 61 GAEPDA---AAAILNEKAGYLHSLLFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANA 117 Query: 121 TRAKD 125 +RAKD Sbjct: 118 SRAKD 122 >PA4743 [J] COG0858 Ribosome-binding factor A Pae Pseudomonas aeruginosa Length = 129 Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Query: 11 RGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL-VDNAEAIKN 69 R R+ DQ+QR+L++LI E+KDPR+G++TIT V+V+ D AHAKVF T + D+A I Sbjct: 7 RTQRIGDQMQRELAQLIQREIKDPRLGLVTITGVEVSRDVAHAKVFITVMGQDDAGKIAL 66 Query: 70 TLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATRAKDSDDE 129 + L A GYLR LG+ + + ++P+LHF +D S RG E+S LI+ A A + DE Sbjct: 67 NMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALIERAVAEDGRRHGDE 126 >NMA1586 [J] COG0858 Ribosome-binding factor A NmA Neisseria meningitidis Z2491 Length = 123 Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 54/118 (45%), Positives = 76/118 (64%), Gaps = 6/118 (5%) Query: 9 PGRGL----RVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNA 64 P RG RV +QI R+L+EL+ LKDPR G IT+ EV+VT DY+HA VF+T L +A Sbjct: 4 PQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTVLNQDA 63 Query: 65 EAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATR 122 I + L A G+LR++L +R+ + +PELHF +D S RG+ +S LID+ A + Sbjct: 64 REITEEV--LEHARGHLRSELAKRIKLFKIPELHFKYDESLERGLNLSALIDQVAAEK 119 >NMB1373 [J] COG0858 Ribosome-binding factor A Nme Neisseria meningitidis MC58 Length = 123 Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 6/118 (5%) Query: 9 PGRGL----RVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNA 64 P RG RV +QI R+L+EL+ LKDPR G IT+ EV+VT DY+HA VF+T L +A Sbjct: 4 PQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVEVTRDYSHATVFYTILNQDA 63 Query: 65 EAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATR 122 I + L A G+LR++L +R+ + PELHF +D S RG+ +S LID+ A + Sbjct: 64 REITEEV--LEHARGHLRSELAKRIKLFKTPELHFKYDESLERGLNLSALIDQVAAEK 119 >PM0757 [J] COG0858 Ribosome-binding factor A Pmu Pasteurella multocida Length = 132 Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 74/106 (69%), Gaps = 1/106 (0%) Query: 11 RGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAE-AIKN 69 R RVA +IQ++++ ++ E+KDPR+GM+T+++V+V+ D A+AKVF T L DN E AI Sbjct: 7 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLAYAKVFVTFLFDNDESAIDA 66 Query: 70 TLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLI 115 + GL KA Y+R+ LG+ + + +PE+ F++D S G+ MS L+ Sbjct: 67 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEGMRMSNLV 112 >HI1288 [J] COG0858 Ribosome-binding factor A Hin Haemophilus influenzae Length = 128 Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 75/106 (70%), Gaps = 1/106 (0%) Query: 11 RGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAE-AIKN 69 R RVA +IQ++++ ++ E+KDPR+GM+T+++V+V+ D ++AK+F T L D+ E AI+ Sbjct: 7 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 66 Query: 70 TLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLI 115 + GL KA Y+R+ LG+ + + +PE+ F++D S G+ MS L+ Sbjct: 67 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNLV 112 >YPO3495 [J] COG0858 Ribosome-binding factor A Ype Yersinia pestis Length = 136 Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 74/110 (67%), Gaps = 5/110 (4%) Query: 11 RGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFT---TLVDNAE-- 65 R RV+ ++Q++++ ++ E+KDPRVGM T++ ++++ D A+AKVF T L DNA+ Sbjct: 7 RSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPD 66 Query: 66 AIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLI 115 +KN + L+ A GY+RT LG+ + + +PEL F +DNS G+ MS L+ Sbjct: 67 TVKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLV 116 >SA1113 [J] COG0858 Ribosome-binding factor A Sau Staphylococcus aureus N315 Length = 116 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 73/107 (68%), Gaps = 1/107 (0%) Query: 11 RGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAEAIKNT 70 R RV +Q++++L ++I ++KDPRVG ITIT+V +T D + AKVF T L ++ E ++NT Sbjct: 5 RAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKE-VENT 63 Query: 71 LAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDE 117 L KA G+++++LG R+ + +PEL + +D S G ++ R+I + Sbjct: 64 FKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQD 110 >STM3285 [J] COG0858 Ribosome-binding factor A Sty Salmonella typhimurium LT2 Length = 133 Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 75/108 (69%), Gaps = 2/108 (1%) Query: 10 GRGLRVADQIQRDLSELIAFELKDPRVGMIT-ITEVQVTPDYAHAKVFFTTLVDNAE-AI 67 GR RVA ++Q++++ ++ E+KDPR+GM+T ++ V+++ D A+AKVF T L D E A+ Sbjct: 6 GRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAV 65 Query: 68 KNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLI 115 K + L++A G++R+ LG+ + + +PEL F +DNS G+ MS L+ Sbjct: 66 KAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLV 113 >rbfA [J] COG0858 Ribosome-binding factor A Eco Escherichia coli K12 Length = 133 Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 75/108 (69%), Gaps = 2/108 (1%) Query: 10 GRGLRVADQIQRDLSELIAFELKDPRVGMIT-ITEVQVTPDYAHAKVFFTTLVDNAE-AI 67 GR RVA ++Q++++ ++ E+KDPR+GM+T ++ V+++ D A+AKV+ T L D E A+ Sbjct: 6 GRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAV 65 Query: 68 KNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLI 115 K + L++A G++R+ LG+ + + +PEL F +DNS G+ MS L+ Sbjct: 66 KAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLV 113