BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0542.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl88 [KG] COG1349 Transcriptional regulators of sugar metabolis... 209 4e-54 SMb21299 [KG] COG1349 Transcriptional regulators of sugar metabo... 197 2e-50 mll1922 Non COG 193 3e-49 YPO1322 [KG] COG1349 Transcriptional regulators of sugar metabol... 149 7e-36 deoR [KG] COG1349 Transcriptional regulators of sugar metabolism... 136 4e-32 ZdeoR [KG] COG1349 Transcriptional regulators of sugar metabolis... 136 4e-32 ECs0920 [KG] COG1349 Transcriptional regulators of sugar metabol... 136 4e-32 STM0864 [KG] COG1349 Transcriptional regulators of sugar metabol... 135 7e-32 PM1344 [KG] COG1349 Transcriptional regulators of sugar metaboli... 129 4e-30 lin0400 [KG] COG1349 Transcriptional regulators of sugar metabol... 108 1e-23 >AGl88 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 149/218 (68%) Query: 4 MIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREA 63 ++++ G L A LGV+ +T+RRD+A + L CLGG+++ G + Y +++E Sbjct: 17 LVQETGVLRLRDAASRLGVSEITIRRDIAADGERLSCLGGYIIPVQDGTVSSDYVLEQEK 76 Query: 64 DQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQ 123 D HA K AC+ AA + D++FIDCGTTM HLA +P ++VICYSLN+A ++ Sbjct: 77 DSHATAKARACRQAAVMIEPYDTVFIDCGTTMPHLARQIPANAHVTVICYSLNVAEELAS 136 Query: 124 RPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPI 183 R + ++I+LGG+YHP +ASF+ +EG+ LKR+ +NKAFLSAGGVD + GV+CS+FHEVPI Sbjct: 137 RNDVRLIMLGGVYHPEAASFSGDEGIEVLKRININKAFLSAGGVDEQHGVTCSHFHEVPI 196 Query: 184 KQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 KQ ++ + Q ++V+D SK + R A Y+++ F+ IV Sbjct: 197 KQMVMQRSMQKHLVVDSSKFSKVRAARYASIGDFNSIV 234 >SMb21299 [KG] COG1349 Transcriptional regulators of sugar metabolism Sme Sinorhizobium meliloti Length = 263 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 138/210 (65%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREADQHAQRKRL 72 L A +LGV+ MTVRRD+A LGGH++ A+ + Y + R AD HA KR Sbjct: 24 LKEAAALLGVSEMTVRRDVADNPGLFGYLGGHIVPAAEIEGDAPYELARAADIHAGAKRQ 83 Query: 73 ACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVILL 132 AC HAAR + +++FIDCGTT+ +L E +P + ++ ICYS+N A ++++ N ++++L Sbjct: 84 ACIHAARHIRPDETIFIDCGTTLEYLVELIPDDYSITAICYSMNTAERLTRKTNLRMVML 143 Query: 133 GGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESAA 192 GG+YHPSSASF+ G+A L +LG+N AFLSA G+D RG +C +FHEVP+KQ I A Sbjct: 144 GGVYHPSSASFSGAPGIATLDQLGINVAFLSAAGIDPARGATCVHFHEVPVKQKVISLAR 203 Query: 193 QCYVVIDQSKLGRFRPAFYSTLEVFSGIVV 222 + Y+V D SKLG+ + AF++ F ++ Sbjct: 204 ENYLVADSSKLGKLKAAFFAPPSAFRSLIT 233 >mll1922 Non COG Length = 247 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 139/209 (66%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREADQHAQRKRL 72 LS A +LGV+ MTVRRD+A + LGGH+L A+ ++ Y + AD HA KR Sbjct: 24 LSEAAALLGVSEMTVRRDIATNQGQIAYLGGHILAAAEIEADIPYELATAADSHAAAKRE 83 Query: 73 ACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVILL 132 AC HA R++ +++FIDCGTT+ HL + +P ++ ICY++N+A +S++PN +I+L Sbjct: 84 ACAHAVRKIRPDETIFIDCGTTLIHLVDLIPENYQITAICYAMNVAERLSRKPNVTIIML 143 Query: 133 GGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESAA 192 GG+YHP+SASF+ L +G+N AFLSA GVDA+RG +C +FHE +KQ + A Sbjct: 144 GGVYHPASASFSGTHDFDILNSVGINVAFLSAAGVDAKRGATCEHFHEAVVKQKVMSLAR 203 Query: 193 QCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 + Y+VID SK+G+ + AF+S ++ F ++ Sbjct: 204 ENYLVIDSSKIGKLKRAFFSAMDGFDAVI 232 >YPO1322 [KG] COG1349 Transcriptional regulators of sugar metabolism Ype Yersinia pestis Length = 254 Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 2/230 (0%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSI-DREADQHAQRKR 71 L A++L V+ MT+RRDL+ E + +I LGG+V+ + N Y + D++A Q +++R Sbjct: 24 LKDAANLLRVSEMTIRRDLSAEPTSVILLGGYVVMDPKSNNANNYFVSDQQAKQVEEKRR 83 Query: 72 LACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVIL 131 + Q AA+ ++E D++F DCGTT+ + + + E+ + ICYSLN + +PN +VIL Sbjct: 84 IG-QLAAQLIIENDTVFFDCGTTIPWIIDEIDEELAFTAICYSLNTFLALQDKPNCKVIL 142 Query: 132 LGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESA 191 GG + P++ F + L + NKAF+SA GV G +C NF E+ +K A+ + Sbjct: 143 CGGEFKPNNCIFTPLSQQSELDNICPNKAFISAAGVSIEYGATCFNFDEILLKHRAMAKS 202 Query: 192 AQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLEV 241 +V D SK G+ +PA TL F +V P + FS +++ Sbjct: 203 QYKILVADHSKFGKIKPASIGTLAQFDALVTDRPPVAEFYLFFSQHSVKI 252 >deoR [KG] COG1349 Transcriptional regulators of sugar metabolism Eco Escherichia coli K12 Length = 252 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGH-VLEASPGGSENRYSI 59 +QE+ R L A +LGV+ MT+RRDL +P++ LGG+ VLE S + Y + Sbjct: 13 LQELKRS-DKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPR---SASHYLL 68 Query: 60 DREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIAN 119 + + + KR A + AA V +LF DCGTT + EA+ EI + +CYSLN Sbjct: 69 SDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFL 128 Query: 120 IVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFH 179 + ++P+ + L GG +H S+A F + L + AF SA GV +G +C N Sbjct: 129 ALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLE 188 Query: 180 EVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQD 229 E+P+K A+ A + +V+D SK G+ RPA L+ F +V PE + Sbjct: 189 ELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDE 238 >ZdeoR [KG] COG1349 Transcriptional regulators of sugar metabolism EcZ Escherichia coli O157:H7 EDL933 Length = 252 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGH-VLEASPGGSENRYSI 59 +QE+ R L A +LGV+ MT+RRDL +P++ LGG+ VLE S + Y + Sbjct: 13 LQELKRS-DKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPR---SASHYLL 68 Query: 60 DREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIAN 119 + + + KR A + AA V +LF DCGTT + EA+ EI + +CYSLN Sbjct: 69 SDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFL 128 Query: 120 IVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFH 179 + ++P+ + L GG +H S+A F + L + AF SA GV +G +C N Sbjct: 129 ALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLE 188 Query: 180 EVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQD 229 E+P+K A+ A + +V+D SK G+ RPA L+ F +V PE + Sbjct: 189 ELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDE 238 >ECs0920 [KG] COG1349 Transcriptional regulators of sugar metabolism Ecs Escherichia coli O157:H7 Length = 252 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGH-VLEASPGGSENRYSI 59 +QE+ R L A +LGV+ MT+RRDL +P++ LGG+ VLE S + Y + Sbjct: 13 LQELKRS-DKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPR---SASHYLL 68 Query: 60 DREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIAN 119 + + + KR A + AA V +LF DCGTT + EA+ EI + +CYSLN Sbjct: 69 SDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFL 128 Query: 120 IVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFH 179 + ++P+ + L GG +H S+A F + L + AF SA GV +G +C N Sbjct: 129 ALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLE 188 Query: 180 EVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQD 229 E+P+K A+ A + +V+D SK G+ RPA L+ F +V PE + Sbjct: 189 ELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDE 238 >STM0864 [KG] COG1349 Transcriptional regulators of sugar metabolism Sty Salmonella typhimurium LT2 Length = 252 Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 6/218 (2%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGH-VLEASPGGSENRYSIDREADQHAQRKR 71 L A +LGV+ MT+RRDL + +P++ LGG+ VLE S + Y + + + + KR Sbjct: 24 LKEAATLLGVSEMTIRRDLNHKSAPVVLLGGYIVLEPR---SASHYLLSDQKSRLVEEKR 80 Query: 72 LACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVIL 131 A Q AA V ++FIDCGTT + EA+ ++ + +CYSLN + +P+ + IL Sbjct: 81 RAAQLAAGLVQAHQTVFIDCGTTTPWIIEAIDNDLPFTAVCYSLNTFLALQDKPHCRAIL 140 Query: 132 LGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESA 191 GG +H S+A F + L + + AF SA GV +G +C N E+P+K A+ + Sbjct: 141 SGGEFHASNAIFKPLDFHETLNNICPDIAFYSAAGVHTSKGATCFNLEELPVKHWAM-TM 199 Query: 192 AQCYV-VIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQ 228 AQC+V V+D SK G+ RPA L F I+ P++ Sbjct: 200 AQCHVLVVDHSKFGKVRPARMGELSRFDTIISDRRPDE 237 >PM1344 [KG] COG1349 Transcriptional regulators of sugar metabolism Pmu Pasteurella multocida Length = 250 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 119/221 (53%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 60 ++ +++ L A++L V+ MT+RRDL S +I LGG++++ ++ Y I Sbjct: 11 LEFLLKQMDKIHLRDAAEMLNVSEMTIRRDLVSCASSVILLGGYIVKDPKTHAQKGYRIF 70 Query: 61 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 120 + +++ K + AA + +GD +F DCG+T+ +A + +I + +C S+N Sbjct: 71 EQQEKNTAEKMYLGKLAASLIEDGDVVFFDCGSTVPFIATQINDDIKFTALCCSINAFLA 130 Query: 121 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 180 + ++PN +IL GG Y +A + + L + NKAF+SA GV ++GV+C NF E Sbjct: 131 LQEKPNCDLILCGGRYSRHNAFLNRIQRHSELDMICTNKAFISAAGVAIQQGVTCFNFDE 190 Query: 181 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 KQ +E Q ++V+D SK R A+ + L F ++ Sbjct: 191 AKAKQRVMEKTQQAFLVVDHSKFNRVEQAYIADLSAFDTVI 231 >lin0400 [KG] COG1349 Transcriptional regulators of sugar metabolism Lin Listeria innocua Length = 253 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAG--EDSPLICLGGHVLEASPGGSENRYS 58 ++ +I + G L + V+ T+RRD+A + + + + G V+ E R Sbjct: 9 IENLIHEKGSASLDDLCKQFNVSKNTIRRDIAKLLQKNTIKKVYGGVVSIYNNPEEIRPF 68 Query: 59 IDREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIA 118 +R+ + HA+ K+L + AA + E D +FID GTT + LA ALP + +++I SL++ Sbjct: 69 ENRDTENHAE-KQLIGKAAADFIEENDLIFIDSGTTTSCLAAALPTDKEITIITNSLDVI 127 Query: 119 NIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNF 178 N S+ N ++I++G + S+ SF E + ++ + KAF++A + GV S+ Sbjct: 128 NFASEMDNVKLIVIGSTFKTSTKSFVGVENWGFFEKYNITKAFMAATALSTTHGVMNSDI 187 Query: 179 HEVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 E IK+ +E A + ++++D +K+ + Y L F +V Sbjct: 188 LEYEIKRHMMEKAREKFLLVDHTKVDKSALLTYGELAEFDWLV 230