BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0538.p (174 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc466 [K] COG1846 Transcriptional regulators Atu Agrobacterium ... 155 4e-38 SMc00380 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu... 145 5e-35 mlr3448 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium... 142 5e-34 alr7168 [K] COG1846 Transcriptional regulators Nos Nostoc sp. PC... 136 3e-32 RSc2325 [K] COG1846 Transcriptional regulators Rso Ralstonia sol... 130 1e-30 RSc0149 [K] COG1846 Transcriptional regulators Rso Ralstonia sol... 112 5e-25 VCA0955 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae 90 3e-18 STM1520 [K] COG1846 Transcriptional regulators Sty Salmonella ty... 65 5e-11 ZmarR [K] COG1846 Transcriptional regulators EcZ Escherichia col... 59 5e-09 ECs2137 [K] COG1846 Transcriptional regulators Ecs Escherichia c... 59 5e-09 >AGc466 [K] COG1846 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 168 Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/166 (49%), Positives = 107/166 (64%), Gaps = 3/166 (1%) Query: 2 KKPARQHDAVDVILDQWRRERPDLDPAPMGPIGRLKRCAALLEGRLEAGFASYDLSVWEF 61 KKP D VD IL QWR+ERPDLD PMG +GRL R + L +EA + LS F Sbjct: 5 KKPM---DHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAF 61 Query: 62 DMLAALRRSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQL 121 D+LA LRR+GSPY+LSP +L + MVSSGTMT+R+ +LE G +ER+ N +D RS+L+ L Sbjct: 62 DVLATLRRAGSPYQLSPGDLLAMTMVSSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISL 121 Query: 122 TRKGLALINRAVESHLDNERRLLAALPAESLAVLDAQLSALLLTLE 167 T +G A++ AV +H+DN+ RL+A L E LD L L E Sbjct: 122 TERGFAIVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFE 167 >SMc00380 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti Length = 164 Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 103/159 (64%) Query: 9 DAVDVILDQWRRERPDLDPAPMGPIGRLKRCAALLEGRLEAGFASYDLSVWEFDMLAALR 68 D VD IL QWRRERP+LD MG +GRL R A L +E+ A + L+ FD+LA LR Sbjct: 6 DHVDKILAQWRRERPELDATAMGLLGRLSRLRAHLAREVESTLADHGLNSASFDVLATLR 65 Query: 69 RSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLAL 128 RSG P+RLSP +L T MV+SGTMT+R+ +LE G +ERL N ED R +L+ LT +GL Sbjct: 66 RSGPPFRLSPGDLLGTTMVTSGTMTNRIDQLEKAGLVERLDNPEDRRGVLIALTPEGLKR 125 Query: 129 INRAVESHLDNERRLLAALPAESLAVLDAQLSALLLTLE 167 ++ AV +H+ N++RL+A L + LDA L L E Sbjct: 126 VDAAVTAHVANQQRLVAGLEPDEREALDALLRKFLAVFE 164 >mlr3448 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti Length = 164 Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 1/143 (0%) Query: 6 RQHDAVDVILDQWRRERPDLDPAPMGPIGRLKRCAALL-EGRLEAGFASYDLSVWEFDML 64 RQ D ++QW+RERPDLD +PMG +GRL ++L+ RL FA + L EFD+L Sbjct: 2 RQMDRAAKAIEQWKRERPDLDVSPMGVLGRLNEASSLIARDRLAPLFAQFGLQAGEFDVL 61 Query: 65 AALRRSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRK 124 A LRRSGSPY L+PT+L+ MV+SG MT+RL RLE G I R + D R ++VQLT K Sbjct: 62 ATLRRSGSPYALTPTDLYEATMVTSGAMTNRLDRLEKAGLILRGPHPNDRRGIVVQLTGK 121 Query: 125 GLALINRAVESHLDNERRLLAAL 147 GLALI+ A+ +H+ NE +LA L Sbjct: 122 GLALIDEALTAHVANEHEILAGL 144 >alr7168 [K] COG1846 Transcriptional regulators Nos Nostoc sp. PCC 7120 Length = 169 Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 102/161 (63%) Query: 8 HDAVDVILDQWRRERPDLDPAPMGPIGRLKRCAALLEGRLEAGFASYDLSVWEFDMLAAL 67 D +D+IL++W++E P LD + + GR+ R A LLE E+ Y L+VW FD+LA L Sbjct: 3 KDRIDIILEEWQQELPQLDTSAVSITGRVLRIARLLEKHRESILIEYGLNVWSFDVLATL 62 Query: 68 RRSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLA 127 RR G P+RL PTEL+S LM+SSG MT+R+ RLE G + R+ + ED RS++VQLT KG+ Sbjct: 63 RRQGQPFRLKPTELYSLLMLSSGAMTNRIDRLEQDGIVIRVRDAEDRRSVMVQLTPKGIQ 122 Query: 128 LINRAVESHLDNERRLLAALPAESLAVLDAQLSALLLTLEN 168 L + + + E+++L+ A L + L LL+ LE Sbjct: 123 LADTVMPILFEKEKQVLSQFTANELQLSIPMLRKLLMLLEQ 163 >RSc2325 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum Length = 165 Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/134 (50%), Positives = 88/134 (65%), Gaps = 1/134 (0%) Query: 15 LDQWRRERPDLDPAPMGPIGRLKRCAALL-EGRLEAGFASYDLSVWEFDMLAALRRSGSP 73 ++QW RERPDLD + M +GRL A ++ RL FA Y L EFD+LA LRR G+P Sbjct: 8 VEQWNRERPDLDVSSMLLLGRLGEAALVIARERLNPLFAEYGLQPGEFDVLATLRRCGAP 67 Query: 74 YRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLALINRAV 133 Y L+PT L+ M+SSG MT+R+ RL+ GW+ER N ED R LV LT G ALI+ AV Sbjct: 68 YALTPTALYDAAMMSSGGMTNRIDRLQQAGWVERRPNPEDGRGTLVALTNAGFALIDEAV 127 Query: 134 ESHLDNERRLLAAL 147 +H+ N+R +L+ L Sbjct: 128 SAHVKNQRAVLSVL 141 >RSc0149 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum Length = 157 Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/145 (44%), Positives = 84/145 (57%) Query: 11 VDVILDQWRRERPDLDPAPMGPIGRLKRCAALLEGRLEAGFASYDLSVWEFDMLAALRRS 70 +D +L QWRRERPDLDP+PM G + R L + A A DL FD+L LRR Sbjct: 1 MDSLLAQWRRERPDLDPSPMAVCGEVWRAGERLRQGVVANIADADLDPAGFDVLLTLRRQ 60 Query: 71 GSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLALIN 130 G LSP+ L +M+S+ MT+RL RLE RG I R + +D R + + LT G AL++ Sbjct: 61 GRGNTLSPSALAKDMMLSTSAMTNRLDRLEKRGLIARQTDPDDRRGLRIVLTDAGFALVD 120 Query: 131 RAVESHLDNERRLLAALPAESLAVL 155 V SHL E R+LAAL A+L Sbjct: 121 GLVASHLVTEERMLAALSQAERAML 145 >VCA0955 [K] COG1846 Transcriptional regulators Vch Vibrio cholerae Length = 174 Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 84/155 (54%) Query: 9 DAVDVILDQWRRERPDLDPAPMGPIGRLKRCAALLEGRLEAGFASYDLSVWEFDMLAALR 68 D+V + +W E P+L+ PM + RL+R A +E ++EA + L+ EF++L LR Sbjct: 2 DSVQKSVMEWANELPELNTLPMSVLHRLQRLARRIELKMEAFYQQAGLTAGEFEVLMTLR 61 Query: 69 RSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLAL 128 G PY L+P++L L++SSG MT+RL RLE +G +ER + D R++ V LT G Sbjct: 62 GVGHPYCLNPSDLQVRLLLSSGAMTNRLTRLERKGLVERNLSRYDRRNVEVTLTEAGRQR 121 Query: 129 INRAVESHLDNERRLLAALPAESLAVLDAQLSALL 163 I + + D + LLA L QL L Sbjct: 122 IELWLPEYCDLQSSLLAKFSEVEQETLSTQLQEWL 156 >STM1520 [K] COG1846 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 144 Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 32 PIGRLKRCAALLEGRLEAGFAS-YDLSVWEFDMLAALRRSGSPYRLSPTELFSTLMVSSG 90 P+GRL + RL + S D++ +F +L ++R +G ++P EL L V G Sbjct: 13 PLGRLIYMVNQKKDRLLNNYLSPLDITATQFKVLCSIRCAGC---ITPVELKKVLSVDLG 69 Query: 91 TMTHRLKRLETRGWIERLANEEDARSMLVQLTRKGLALINRAVE-SHLDNERRLLAALPA 149 +T L RL +GWIERL N D R +LV+LT G A+ + + D + L L A Sbjct: 70 ALTRMLDRLLCKGWIERLPNPNDKRGVLVKLTPDGAAICEQCHQRPGQDLHQELTKNLTA 129 Query: 150 ESLAVLDAQLSALL 163 + +A L+ L +L Sbjct: 130 DEVATLEYLLKKIL 143 >ZmarR [K] COG1846 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 125 Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 47 LEAGFASYDLSVWEFDMLAALRRSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIE 106 L + D++ +F +L ++R + ++P EL L V G +T L RL +GW+E Sbjct: 10 LNEYLSPLDITAAQFKVLCSIRCAAC---ITPVELKKVLSVDLGALTRMLDRLVCKGWVE 66 Query: 107 RLANEEDARSMLVQLTRKGLALINRAVE-SHLDNERRLLAALPAESLAVLDAQLSALL 163 RL N D R +LV+LT G A+ + + D + L L A+ +A L+ L +L Sbjct: 67 RLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVL 124 >ECs2137 [K] COG1846 Transcriptional regulators Ecs Escherichia coli O157:H7 Length = 125 Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 47 LEAGFASYDLSVWEFDMLAALRRSGSPYRLSPTELFSTLMVSSGTMTHRLKRLETRGWIE 106 L + D++ +F +L ++R + ++P EL L V G +T L RL +GW+E Sbjct: 10 LNEYLSPLDITAAQFKVLCSIRCAAC---ITPVELKKVLSVDLGALTRMLDRLVCKGWVE 66 Query: 107 RLANEEDARSMLVQLTRKGLALINRAVE-SHLDNERRLLAALPAESLAVLDAQLSALL 163 RL N D R +LV+LT G A+ + + D + L L A+ +A L+ L +L Sbjct: 67 RLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVL 124