BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0497.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing prot... 443 e-124 PA2337 [K] COG2207 AraC-type DNA-binding domain-containing prote... 232 8e-61 mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing prot... 203 4e-52 AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing prot... 128 1e-29 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing prote... 100 5e-21 TM1005 [K] COG2207 AraC-type DNA-binding domain-containing prote... 69 2e-11 AGc3663 [K] COG2207 AraC-type DNA-binding domain-containing prot... 68 2e-11 AGc720 [K] COG2207 AraC-type DNA-binding domain-containing prote... 65 2e-10 BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing prot... 64 5e-10 SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot... 63 8e-10 >AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust. Identities = 201/287 (70%), Positives = 241/287 (83%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAW HGYPFRTVRWHYHPEYEIHLVVATSG FY+GD +G F+PG Sbjct: 12 MQPDLELVHIRKGESFAAWRHGYPFRTVRWHYHPEYEIHLVVATSGTFYIGDFVGRFSPG 71 Query: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 QL+MTGPNLPQNWIS+I DE+VP RSLVIQFPE ++ S+AEM+ + LL+RS RG Sbjct: 72 QLIMTGPNLPQNWISEIEPDEIVPTRSLVIQFPESFIEDACTSMAEMDVVRALLDRSRRG 131 Query: 121 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS 180 +LFD TS+ VRPL+ RLI+ +GL RLALFWE+LD+L NAP EVLASLSY+LDL+G+ Sbjct: 132 ILFDDETSDRVRPLVLRLIEAQGLTRLALFWEILDLLVNAPSSEVLASLSYELDLTGIGD 191 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL 240 SG+NRA+++LR+HLT+ + E DLADMVGQ+ S+FSRAFKRHTGTTLVRY+NQLR+DLAC Sbjct: 192 SGINRALSHLRQHLTEQVEEIDLADMVGQSPSAFSRAFKRHTGTTLVRYRNQLRIDLACQ 251 Query: 241 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASN 287 LL ++ ++CY+ GFSNLSNFNRHF K+KGMSPS FR FA+ Sbjct: 252 MLLADQDVKVAEVCYDVGFSNLSNFNRHFLKLKGMSPSRFRTIFAAQ 298 >PA2337 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 301 Score = 232 bits (591), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 177/280 (63%), Gaps = 2/280 (0%) Query: 3 PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQL 62 P EL+ +G S HG+P VRWH+H EYE+HL+VA+SG+ ++GD+IG+FAP L Sbjct: 10 PSYELMDDHEGHSLIYRQHGFPSPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFAPDTL 69 Query: 63 VMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRGLL 122 +TGPNLP NWIS + DE+V R +++ F +++++ + +E+ + PLL R+ G+ Sbjct: 70 FLTGPNLPHNWISQVEPDEVVARRDMLVNFTDEVLEDGSGVFSELNRLAPLLARARYGIE 129 Query: 123 F-DAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNSS 181 F D A R L+QR+ D G+ RL F+ L++ LA + ++L++++ N Sbjct: 130 FRDPALIGESRRLLQRIADSGGMTRLGYFFILMEQLAECEDYQLLSTVTSSQLADEHNVE 189 Query: 182 GLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLA 241 +NRA+ Y+ +H D+ ++ +A +G + FSR FK+ G V + N+LR+ +C Sbjct: 190 RINRAVDYIFQHYAQDLTQEQVAAHLGMTPTYFSRFFKQAAGRGFVEFVNRLRISKSC-E 248 Query: 242 LLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFR 281 LL R + +T++C+E+GFSNLSNFNR F ++KGM+P+ +R Sbjct: 249 LLARSELPVTEVCFESGFSNLSNFNRRFQQLKGMTPTGYR 288 >mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 305 Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 105/280 (37%), Positives = 161/280 (57%), Gaps = 1/280 (0%) Query: 3 PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQL 62 P E + +SF + YP+ W++HPEYEIHL+ +SG VGDHIG+F PG L Sbjct: 17 PAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYL 76 Query: 63 VMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRGLL 122 + G LP +W++ + E++ R +V+QF Q + A + E+ + P LERS RG++ Sbjct: 77 TIVGGGLPHDWVTAVRPGELIEGRDIVLQFDAQRLRGSAGLLPELRELEPFLERSLRGMV 136 Query: 123 FDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNSSG 182 F T+ LM+R+ GL RL LF EL+D+LA E E+L+S + L + Sbjct: 137 FHGRTALEGAGLMERMGTVHGLARLCLFLELVDLLARTDEYELLSSPDFSPVLDAASLDI 196 Query: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 + R + YL +H +D+ D+A+ G + S+FSR F+++TG + + +LR+ AC L Sbjct: 197 IQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSFSDHLAKLRLWQAC-KL 255 Query: 243 LTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRN 282 L ITDIC++ G+ N+SNFNR F + M+PS +R Sbjct: 256 LADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRK 295 >AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 13/290 (4%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 M+P E V + S+ + P WHYHPE+E+ L + ++G +VGD + ++ G Sbjct: 17 MEPWFEAVSVPADRSWLLFDRRLPEFPFNWHYHPEFELTLTLNSAGMRFVGDSVENYGDG 76 Query: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 LV+ GPNLP W S + R++V F ++ A E+ AI PLL S G Sbjct: 77 DLVLLGPNLPHAWQSHGLINAPGVHRAVVCWFTRDWIEGLIALTPELSAITPLLVESGHG 136 Query: 121 LLFD----AATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAP--EPEVLASLSYKLD 174 + F A E + L + +Q+ L L + +L V P EV AS + + Sbjct: 137 ICFGEDALAKVGERLATLHKIAPEQQILTLLGVLVDLARVSDRRPLSAGEVTASTAPR-- 194 Query: 175 LSGVNSSGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLR 234 + + + R + ++ H I + L+++ + S R FKR T T+ +Y QLR Sbjct: 195 ----DRARMQRVLNHIHAHYIGTISIKPLSEIAHLSDSQLQRLFKRSTRMTISQYIGQLR 250 Query: 235 VDLACLALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTF 284 V AC LL + + I ETGFS+ ++F+R F +GM+P ++R F Sbjct: 251 VGGAC-RLLAQTDLSLARIAEETGFSDAAHFSRQFRAARGMTPGDYRRQF 299 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 299 Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 119/264 (45%), Gaps = 8/264 (3%) Query: 30 WHYHPEYEIHLVVATSGRF----YVGDHIGDFAPGQLVMTGPNLPQNWISDIAADEMVPV 85 WHYH EYE+ L RF + GD IG L++ GP LP ++ + Sbjct: 34 WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPHMIAGRQLINKAQTL 93 Query: 86 RSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRGLLFDAATSETVRPLMQRLIDQRGLK 145 S +I F ++ +D+ + + + +A+ L + + G+ T+ V L+ + Q Sbjct: 94 HSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLSEQTATRVAELLANVDQQPHSY 153 Query: 146 RLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS---SGLNRAIAYLREHLTDDIGEQD 202 + E L V+A+ + + L+ Y + NS + A Y+ +H I D Sbjct: 154 QSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQHYAQAIKITD 213 Query: 203 LADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLALLTRPQARITDICYETGFSNL 262 L + + SS R F++H G + + Q R+ AC LL I I TGF NL Sbjct: 214 LCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKAC-ELLASSALPIALIAERTGFGNL 272 Query: 263 SNFNRHFHKIKGMSPSEFRNTFAS 286 SNFNR F +K M+P EFR F + Sbjct: 273 SNFNRQFKTLKTMTPREFRQRFQA 296 >TM1005 [K] COG2207 AraC-type DNA-binding domain-containing proteins Tma Thermotoga maritima Length = 299 Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 66/108 (61%), Gaps = 4/108 (3%) Query: 172 KLDLSGVNSSGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKN 231 ++ LSG N + A+ YL+EH + + + LA+MVG ++S+F + FK TG T ++Y+ Sbjct: 181 QIALSGKND--VITALNYLKEHFNESVNMKRLAEMVGMSVSTFYQNFKILTGMTPLQYQK 238 Query: 232 QLRVDLACLALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSE 279 +LR+ A L+ + +T Y+ G+ +LS F+R + + G+SPS+ Sbjct: 239 KLRLCEARKLLMA--GSDVTTAAYQVGYESLSQFSREYKRFFGVSPSQ 284 >AGc3663 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 301 Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 51/300 (17%) Query: 14 ESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQLVMTGPNLPQNW 73 ES P +Y P + +V+ S +G ++ G ++T +LP W Sbjct: 30 ESLGISRRTIPSAPCHGNYRPC--LAMVIQGSKSVQLGTDTINYGAGDYLLTSLDLPVAW 87 Query: 74 ISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLER-----------SHRGLL 122 V++ ++ C A + E ++ L+ R + RG++ Sbjct: 88 --------------RVVEASREVPHFCIALAIDSEKLLDLMRRIPIDPSSEPANAQRGIV 133 Query: 123 FDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAP--EPEVLASLS--------YK 172 + AT E L+D ++ L L D+ A AP E E+L + Sbjct: 134 VNRATPE--------LLDA-AIRLLRLLDRPADIAAMAPLIEQEILYRILTGPAGGQLMN 184 Query: 173 LDLSGVNSSGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQ 232 + +G + + + RAIA+LRE+ + ++LA+ +G ++SSF FK T T V+Y+ Q Sbjct: 185 VIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQYQKQ 244 Query: 233 LRVDLA-CLALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASNGLFA 291 LR+ A L LL R A + G+ + S F+R + + G+SPS R+ AS + A Sbjct: 245 LRLHEARRLMLLERLDAGTAG--HRVGYQSPSQFSREYSRFYGLSPS--RDVDASREIAA 300 >AGc720 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 299 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 L A Y+REH I ++LA++ + S FS AFK TG +++ Q R+D L Sbjct: 198 LRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARID-RVKEL 256 Query: 243 LTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPS 278 + RP +TDI GFS+ ++F+R F K+ G+SPS Sbjct: 257 MMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPS 292 >BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing proteins Bsu Bacillus subtilis Length = 761 Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 184 NRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLALL 243 R IA + E DI + AD +G N + S+AFK+ TG + Y Q+R++ A LL Sbjct: 659 ERVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAK-ELL 717 Query: 244 TRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTF 284 +I D+ E G+ + + FNR F K GM P FR + Sbjct: 718 VNTNKKIHDVSEEVGYRH-NYFNRIFKKQVGMPPGVFRQMY 757 >SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 333 Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 L RA+A+L EHL + LA+ VG + FSR FK+ TG + RY + RV A L L Sbjct: 234 LRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQL-L 292 Query: 243 LTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFR 281 L I +I G+S+ S+F + F + G+ PS +R Sbjct: 293 LQETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYR 331