BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0428.p (676 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer... 132 3e-30 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 119 2e-26 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 119 2e-26 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 117 1e-25 YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis 100 2e-20 STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typ... 94 1e-18 TP0872 [N] COG1345 Flagellar capping protein Tpa Treponema pallidum 87 1e-16 lin0715 [N] COG1345 Flagellar capping protein Lin Listeria innocua 74 8e-13 VC2140 [N] COG1345 Flagellar capping protein Vch Vibrio cholerae 62 3e-09 >PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa Length = 474 Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 113/354 (31%), Positives = 172/354 (48%), Gaps = 28/354 (7%) Query: 342 NQTYSSGSLALQVGSKSFTINPTDLDGSGAIGLNDVMKAINDA--NTGVTASITNDGSKD 399 N ++SG+L + VG D + G+ D AIN A GV+A+I D S Sbjct: 118 NAKFNSGTLNISVGDTKLPAITVDSSNNTLAGMRD---AINQAGKEAGVSATIITDNSGS 174 Query: 400 HLVLTPTGT---DAVKLTGAGD-------YSDLA-----------GSTMGQLAKAQDAKL 438 LVL+ T T +K+ + D S LA G+ G + KA + ++ Sbjct: 175 RLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANGEI 234 Query: 439 TVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSINNDTSGLSTAANTFVTAYNTL 498 TVDG+ +I SN V++VI GV+ ++ VT + +L+++ D +G+ FV AYNTL Sbjct: 235 TVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYNTL 294 Query: 499 AKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTMLGALGDNGATNLSQIGIS 558 K + T T TG+ L ++SV AL+ +R+ ++ + + NL+ +GI+ Sbjct: 295 TKFINEQTVVTKVGEDKNPVTGA-LLGDASVRALVNTMRSELIASNENGSVRNLAALGIT 353 Query: 559 FQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQKLMDGILGESGVLASKTKG 618 KDGTL +D KL A + DF+G+ FT T G+ +L M G+L +T Sbjct: 354 TTKDGTLEIDEKKLDKAISADFEGVASYFTGDT-GLAKRLGDKMKPYTDAQGILDQRTTT 412 Query: 619 LQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKL 672 LQ +L V Q+ RL L++ T QFN L+ M RQ +T LA L Sbjct: 413 LQKTLSNVDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 31/242 (12%) Query: 8 ISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTL 67 IS G D LVN+++++E ++ L E + T ++A G K+A +++Q+AL L Sbjct: 4 ISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTAL 63 Query: 68 TA-ASFSAQKTTLSN-----AGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTF 121 + A F A+ SN A + + N+ ++ +A LQ+ A F Sbjct: 64 NSNAVFMARTAKSSNEDILKASATQSAVAGTYQIQVNSLATSSKIA--LQAIADPANAKF 121 Query: 122 NAGDSVAIKVG-TNQPTFITLQANATLAGVRDAINAA--KAGVTASITTDGSGDHLVLES 178 N+G ++ I VG T P +N TLAG+RDAIN A +AGV+A+I TD SG LVL S Sbjct: 122 NSG-TLNISVGDTKLPAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSGSRLVLSS 180 Query: 179 -NTGDTANTIRITA-------NNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIA 230 TGD + I++ N SLS LA+DP++ AP+ + AAAG A Sbjct: 181 TKTGDGKD-IKVEVSDDGSGGNTSLSQLAFDPAT----------APKLSDGAAAGYVTKA 229 Query: 231 VN 232 N Sbjct: 230 AN 231 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 172/329 (52%), Gaps = 25/329 (7%) Query: 362 NPTDLDGSGA-IGLNDVMKAINDANTGVTASITNDGSKDH-LVLTP--TGTD-AVKLTGA 416 +P +D S A L+ + AIN+A GV+ASI N G+ D+ L +T TG D A+ L+ + Sbjct: 134 DPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVS 193 Query: 417 GDYSDLAGSTMGQLAKA-----------QDAKLTVDGVTVTITSNKVTNVISGVTLNLSK 465 GD D S MG A A Q+A+LTV+ V + +SN +++ + +TLNL+ Sbjct: 194 GD--DALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLND 251 Query: 466 VTTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTP--STTKGQASTGSPL 523 VTT N +L+I DTS TA +V AYN+L ++LTK T + Q+S+ L Sbjct: 252 VTTG--NQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGAL 309 Query: 524 ASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTNAANKDFDG 582 +S++ + Q+++ + + + L+QIGI+ DG L LDA KLT A KD G Sbjct: 310 LGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASG 369 Query: 583 ITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDL 640 + L G+ + + L +G++ + T G+ +L +T AA+ R+ Sbjct: 370 VGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQ 429 Query: 641 KDTYTNQFNRLNVTLATMQSRQSYLTQQL 669 Y QF +L+V + ++ S SYLTQQ Sbjct: 430 VARYKEQFTQLDVLMTSLNSTSSYLTQQF 458 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 36/286 (12%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAAS-FS 73 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 A-QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQ----KLQSAGFTAGQTFNAGDS-V 127 A TT +A T N +T S LAQ ++ DS + Sbjct: 72 ATSSTTAFSATTAGNAIAGKYTI------SVTHLAQAQTLTTRTTRDDTKTAIATSDSKL 125 Query: 128 AIKVGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-D 182 I+ G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+GD+ V ++TG D Sbjct: 126 TIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLD 185 Query: 183 TANTIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVS 241 A T+ ++ +++L S + YD S++ + + AA + VN + A++ S Sbjct: 186 NAMTLSVSGDDALQSFMGYDASASSNGMEVSV---------AAQNAQLTVNNV--AIENS 234 Query: 242 SAGIAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 S I+ +N L + TGN + I Q + + ++D +NA Sbjct: 235 SNTISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 278 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 172/329 (52%), Gaps = 25/329 (7%) Query: 362 NPTDLDGSGA-IGLNDVMKAINDANTGVTASITNDGSKDH-LVLTP--TGTD-AVKLTGA 416 +P +D S A L+ + AIN+A GV+ASI N G+ D+ L +T TG D A+ L+ + Sbjct: 134 DPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVS 193 Query: 417 GDYSDLAGSTMGQLAKA-----------QDAKLTVDGVTVTITSNKVTNVISGVTLNLSK 465 GD D S MG A A Q+A+LTV+ V + +SN +++ + +TLNL+ Sbjct: 194 GD--DALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLND 251 Query: 466 VTTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTP--STTKGQASTGSPL 523 VTT N +L+I DTS TA +V AYN+L ++LTK T + Q+S+ L Sbjct: 252 VTTG--NQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGAL 309 Query: 524 ASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTNAANKDFDG 582 +S++ + Q+++ + + + L+QIGI+ DG L LDA KLT A KD G Sbjct: 310 LGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASG 369 Query: 583 ITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDL 640 + L G+ + + L +G++ + T G+ +L +T AA+ R+ Sbjct: 370 VGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQ 429 Query: 641 KDTYTNQFNRLNVTLATMQSRQSYLTQQL 669 Y QF +L+V + ++ S SYLTQQ Sbjct: 430 VARYKEQFTQLDVLMTSLNSTSSYLTQQF 458 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 36/286 (12%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAAS-FS 73 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 A-QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQ----KLQSAGFTAGQTFNAGDS-V 127 A TT +A T N +T S LAQ ++ DS + Sbjct: 72 ATSSTTAFSATTAGNAIAGKYTI------SVTHLAQAQTLTTRTTRDDTKTAIATSDSKL 125 Query: 128 AIKVGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-D 182 I+ G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+GD+ V ++TG D Sbjct: 126 TIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLD 185 Query: 183 TANTIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVS 241 A T+ ++ +++L S + YD S++ + + AA + VN + A++ S Sbjct: 186 NAMTLSVSGDDALQSFMGYDASASSNGMEVSV---------AAQNAQLTVNNV--AIENS 234 Query: 242 SAGIAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 S I+ +N L + TGN + I Q + + ++D +NA Sbjct: 235 SNTISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 278 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 172/329 (52%), Gaps = 25/329 (7%) Query: 362 NPTDLDGSGA-IGLNDVMKAINDANTGVTASITNDGSKDH-LVLTP--TGTD-AVKLTGA 416 +P +D S A L+ + AIN+A GV+ASI N G+ ++ L +T TG D A+ L+ + Sbjct: 137 DPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVS 196 Query: 417 GDYSDLAGSTMGQLAKA-----------QDAKLTVDGVTVTITSNKVTNVISGVTLNLSK 465 GD D S MG A A Q+A+LTV+ V + +SN +++ + +TLNL+ Sbjct: 197 GD--DALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLND 254 Query: 466 VTTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTP--STTKGQASTGSPL 523 VTT N +L+I DTS TA +V AYN+L ++LTK T + Q+S+ L Sbjct: 255 VTTG--NQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGAL 312 Query: 524 ASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQ-KDGTLALDATKLTNAANKDFDG 582 +S++ + Q+++ + + + L+QIGI+ DG L LDA KLT A KD G Sbjct: 313 LGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASG 372 Query: 583 ITQLFTS--ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDL 640 + L G+ + + L +G++ + T G+ +L +T AA+ R+ Sbjct: 373 VGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQ 432 Query: 641 KDTYTNQFNRLNVTLATMQSRQSYLTQQL 669 Y QF +L+V + ++ S SYLTQQ Sbjct: 433 VARYKEQFTQLDVLMTSLNSTSSYLTQQF 461 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 152/283 (53%), Gaps = 27/283 (9%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAASFSA 74 LD++++++ L + + K+ LTP+ N++SSF +SAYG+LK+A T++Q+A L+ A + Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 75 QKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTFNA---GDS-VAIK 130 +T S+ + T A T T + + + T T A DS + I+ Sbjct: 72 ATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQ 131 Query: 131 VGTNQ-PTFITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHL--VLESNTG-DTAN 185 G ++ P I + AN++L+G+RDAIN AKAGV+ASI G+G++ V ++TG D A Sbjct: 132 QGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAM 191 Query: 186 TIRITANNSLSS-LAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKVSSAG 244 T+ ++ +++L S + YD S+ SS ++ AA + VN + A++ SS Sbjct: 192 TLSVSGDDALQSFMGYDASA--SSNGMEV-------SVAAQNAQLTVNNV--AIENSSNT 240 Query: 245 IAPGSTFDNGVL---AIKTGNGSTAIIQPKTNSLAGVRDAINA 284 I+ +N L + TGN + I Q + + ++D +NA Sbjct: 241 ISDA--LENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNA 281 >YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis Length = 466 Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 157/315 (49%), Gaps = 20/315 (6%) Query: 374 LNDVMKAINDANTGVTASITN-DGSKDHLVLTP--TGTDA-VKLTGAGDY---------- 419 L + AIN V ASI D + +L LT TGT + + ++ AGD Sbjct: 151 LTGIRDAINKQEGSVNASIMKADDNTYYLALTSKDTGTQSEMTISVAGDETLNNFLNYTP 210 Query: 420 SDLAGS-TMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSIN 478 S GS + Q KA+DA L+V+GV++T SN +T+ GVT+NL VT L+I Sbjct: 211 SSTGGSGALTQKVKAEDATLSVNGVSITRQSNTITDAPQGVTINLKAVTKEGAPEQLTIV 270 Query: 479 NDTSGLSTAANTFVTAYNTLAKAVANLTKQT-PSTTKGQASTGSPLASESSVLALMGQVR 537 D + A +FV AYN+L +LTK T T + Q+++ L + ++ ++ Q++ Sbjct: 271 RDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDGTLRSIQTQLK 330 Query: 538 NTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFT--SATNGVV 595 + + + + T L+ IGI+ DG L ++A KL A + +T F T G Sbjct: 331 SQLASSQSGDLKT-LASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFVGDGETTGFA 389 Query: 596 PKLQKLMDGILGES-GVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVT 654 + +KL++ L + G L + T G+ SLK + Q A A ++ + Y QF +L+ Sbjct: 390 TQTEKLLNTALDTTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYKTQFTQLDKL 449 Query: 655 LATMQSRQSYLTQQL 669 + +M S S+LTQQ Sbjct: 450 MTSMNSTASFLTQQF 464 >STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typhimurium LT2 Length = 467 Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 23/324 (7%) Query: 370 GAIGLNDVMKAINDANTGVTASITNDGSKD-HLVLTP-TGTD-AVKLTGAGD--YSDLAG 424 G + + AINDA++G+ ASI + LVLT +GTD +K+T GD +DL Sbjct: 149 GDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLA 208 Query: 425 -------STMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 M +L KA++AKL V+G+ + SN VT+ G+TL L+K T A ++++ Sbjct: 209 YDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDA---TVTV 265 Query: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGS-PLASESSVLALMGQV 536 D + A ++V AYN+L ++LTK T +AS + L +S V + + Sbjct: 266 TKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTIQTGI 325 Query: 537 RNTMLGALGDNGATNLSQIGISFQKDGT---LALDATKLTNAANKDFDGITQLFTS--AT 591 R + ++ +++IGI+ +DGT L +D KLT + +L Sbjct: 326 RAQFANSGSNSAFKTMAEIGIT--QDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKE 383 Query: 592 NGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRL 651 G+ K+ + L + G++ + + +LK +T Q + + + + Y QF +L Sbjct: 384 TGITTKIATEVKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQL 443 Query: 652 NVTLATMQSRQSYLTQQLAKLSKS 675 + ++ + + SYLTQQ ++KS Sbjct: 444 DTMMSKLNNTSSYLTQQFTAMNKS 467 >TP0872 [N] COG1345 Flagellar capping protein Tpa Treponema pallidum Length = 722 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 34/261 (13%) Query: 431 AKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSINNDTSGLSTAANT 490 ++AQDA DGV VT +N +T++I GVTL+L + T + +LS+ D + + A Sbjct: 447 SQAQDAAFDFDGVHVTRGTNSITDLIPGVTLSLHERTEKTE--TLSVTPDVNAMKNAIIE 504 Query: 491 FVTAYNTL-----------AKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNT 539 FV YN L + + L TP K + L +S++L L ++R Sbjct: 505 FVAKYNRLMAEINIVTSNKSAIIDELAYLTPEEKKKETEQLGSLHGDSTLLMLKDRLRRN 564 Query: 540 MLGAL--GDNGATN-LSQIGIS-----------FQKDGTLALDATKLTNAANKDFDGITQ 585 A GD+GA+ L+ IGIS Q G L +D KL ++ N D + Sbjct: 565 TSNAYRAGDDGASRTLAHIGISTKAHASSGINTAQLRGYLEIDEEKLHSSLNAQKDQVRA 624 Query: 586 LFTSAT-------NGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQ 638 LF + NGV L +L++ LG SG+ A ++ G+ + +K + + +L+ Sbjct: 625 LFGHDSDGDLLVDNGVAFTLTELLNPYLGRSGIFAIRSNGVDERIKSTEKRVETYDKQLE 684 Query: 639 DLKDTYTNQFNRLNVTLATMQ 659 + ++++ ++ L ++Q Sbjct: 685 KKERELRHKYHTMDGALRSLQ 705 >lin0715 [N] COG1345 Flagellar capping protein Lin Listeria innocua Length = 429 Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 92/342 (26%), Positives = 156/342 (45%), Gaps = 33/342 (9%) Query: 331 SGTITTTGVATNQTYSSG--SLALQVG-SKSFTINPTDLDGSGAIGLNDVMKAINDANTG 387 S +I +AT TY+ + ++G S + IN ++ + +VM +IN A G Sbjct: 95 SYSIEVQNLATADTYNKAVPDIEAKIGVSGTIKINGKEIKVDADSSMKNVMNSINSA--G 152 Query: 388 VTASITNDGSKDHLVLTPTGT---DAVKLTGAGDYSD---LAGSTMGQLAKAQDAKLTVD 441 +I G +++V+T + T +++K G + L ++ LA A+DAKL ++ Sbjct: 153 AKVNIYTLG--ENMVVTASTTGVENSIKFEGDSAVLEALGLVQNSPDHLA-AEDAKLRIN 209 Query: 442 GVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKA 501 G TVT +NKVTN I GVT+NL K TT A+ ++ +D S +FV YN L Sbjct: 210 GATVTSATNKVTNYIPGVTINLKKETTGAEKLTIQDQSDEKAASMIT-SFVNTYNALT-- 266 Query: 502 VANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTMLGALGDNGATNLSQIGISFQK 561 ST K G+ L + ++ L + N N L GIS K Sbjct: 267 ---------STMKTYTGKGTILQASAADLEANRALNNVFQHKKDGN---TLFDFGISVDK 314 Query: 562 DGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQKLMDGILGESGVLASKTKGLQD 621 +G L +D T + +D + + F G+ +L + ++ G +G ++ +T + + Sbjct: 315 EGVLKVDETAMKKMVAEDPTAVERFFF-GIGGIGDELYQSLNKTFGSTGFISDETTSMTN 373 Query: 622 SLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQSRQS 663 + + + T +R L T+Q+N+ L MQ+ QS Sbjct: 374 EINKLNLKLTDITSRNDTLLTNITDQYNKW---LEMMQAMQS 412 >VC2140 [N] COG1345 Flagellar capping protein Vch Vibrio cholerae Length = 666 Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 110/240 (45%), Gaps = 12/240 (5%) Query: 427 MGQLAKAQDAKLTVDGV-TVTITSNKVTNVISGVTLNLS-KVTTSADNFSLSINNDTSGL 484 M ++ AQD+ + +DGV T++ +N + N I GV L L K + + I D + Sbjct: 424 MTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERV 483 Query: 485 STAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTMLGAL 544 FV AYN + L P T GQA PLA +S V + +++ T+ + Sbjct: 484 RNDIEQFVAAYNQFFQTSKELAGVDPRT--GQAG---PLAGDSIVRSADSRLK-TVFSSS 537 Query: 545 GDNGATNL---SQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQKL 601 + NL ++ GI+ + GTL ++ L N +F + + F G +++ Sbjct: 538 IEQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFF-GGNQGFAKRVEDA 596 Query: 602 MDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQSR 661 + + G +G + ++ K L + + D Q + + R++ L+ +F+ + + MQS+ Sbjct: 597 ISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQ 656