BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0414.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1863 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 251 1e-66 AGl2822 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 245 6e-65 mll7032 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 244 1e-64 SMc01644 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tra... 194 1e-49 mll5124 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 192 4e-49 mlr9213 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 178 8e-45 AGpA496 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 173 2e-43 SMa0299 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 152 7e-37 mll7349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 146 3e-35 BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 133 4e-31 >SMa1863 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 287 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/219 (63%), Positives = 171/219 (78%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS F LGSDYLGRDMLSRIL G R T+G++LAA +A +G + + AA +GGW D ++ Sbjct: 63 MSRDFWLGSDYLGRDMLSRILMGARYTVGISLAAVTIACFSGVVLGMIAAVAGGWLDTLL 122 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LDAL SIPSK+F L++VA GSS+ +L+LT ++ Y+PGAYR AR+LAVN+ AM+++ Sbjct: 123 SRLLDALNSIPSKLFGLVVVAAVGSSIPVLILTLSVIYIPGAYRFARALAVNINAMDFIT 182 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGE Y++ E+LPN+I PVLAD G+RFV++VLLLSGLSFL LGVQPP ADWG+L Sbjct: 183 VARIRGESTLYLIRSEILPNIIGPVLADLGIRFVFIVLLLSGLSFLGLGVQPPYADWGAL 242 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSK 219 VRENI GL GA AVI P+ AIASLTI VNLLIDNL K Sbjct: 243 VRENIGGLPFGAPAVIFPSFAIASLTISVNLLIDNLPQK 281 >AGl2822 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 134/219 (61%), Positives = 171/219 (78%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 M+ LGSDYLGRD+ SRIL G R T+G++LAA +A +G + + AA GGW DA++ Sbjct: 59 MTSDLWLGSDYLGRDVFSRILMGARFTVGISLAAVTIACVSGVVLGMCAAVVGGWFDAML 118 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LDA+ SIPSK+F L++VA GSS+ +L++T ++ Y PGAYR AR+LAVNV M++V Sbjct: 119 SRFLDAVNSIPSKLFGLVVVAAVGSSIPVLIVTLSVIYTPGAYRFARALAVNVNTMDFVT 178 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGE + Y+++ E+LPN+IRPVLAD G+RFV++VLLLSGLSFL LG+QPP+ADWG+L Sbjct: 179 VARVRGESLLYLISSEILPNIIRPVLADLGVRFVFIVLLLSGLSFLGLGLQPPNADWGAL 238 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSK 219 VRENI GL A AVI P+LAIASLTI VNLLIDNL K Sbjct: 239 VRENIGGLPFAAPAVIFPSLAIASLTISVNLLIDNLPQK 277 >mll7032 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mlo Mesorhizobium loti Length = 283 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/219 (62%), Positives = 169/219 (77%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 M LGSDYLGRDMLSR+L G R T+G++LAA +A +G + + AA GGW D + Sbjct: 59 MRQGLWLGSDYLGRDMLSRVLMGARYTVGISLAAVAIACFSGVVLGMTAAVIGGWVDTCL 118 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LDA+ SIPSK+F L++VA GSS+ L+LT A+ Y+PGAYR AR+LAVN+ +M+++ Sbjct: 119 SRFLDAMNSIPSKLFGLVVVAAVGSSIPALILTLAVIYIPGAYRFARALAVNINSMDFMT 178 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGE Y++ E+LPN+IRPVLADFGLRFV++VLLLSGLSFL LG+QPP ADWG+L Sbjct: 179 VARVRGESTAYLIGSEILPNIIRPVLADFGLRFVFIVLLLSGLSFLGLGLQPPLADWGAL 238 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSK 219 VRENI GL A AVI+P+LAIASLTI VNLLIDNL K Sbjct: 239 VRENIGGLPFAAPAVIIPSLAIASLTISVNLLIDNLPQK 277 >SMc01644 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 275 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/219 (46%), Positives = 153/219 (69%) Query: 4 KFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVISRA 63 FLLG+D LGRD+LSR+++G R TI +ALAATVL+ A G ++ AA +GG+ D SR Sbjct: 49 DFLLGTDNLGRDLLSRLIYGARTTIFVALAATVLSFALGMILSFTAAVTGGFVDQFFSRF 108 Query: 64 LDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQAAR 123 D ++++P+ +FAL+++A + +LVL A+ +RI R++A++V ME+V+AAR Sbjct: 109 NDLMMAVPTLIFALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAVMEFVEAAR 168 Query: 124 ARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRE 183 RGEG +I+ E+LPN + P+LA+FGLRF + +L LS LSFL LG+QPP ADWG +V++ Sbjct: 169 LRGEGNVWIIFREILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKD 228 Query: 184 NISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAA 222 N G+ G A ++P AIA+L I VNL++D L + ++ Sbjct: 229 NKDGIIFGISAALIPGAAIAALAICVNLVVDWLMKRTSS 267 >mll5124 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mlo Mesorhizobium loti Length = 274 Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 153/219 (69%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+D LGRD+LSR+++G R T+ +A+ AT L+ + G + AA GGW D ++ Sbjct: 47 MSAAHWLGTDNLGRDLLSRMIYGARITLFIAVLATALSFSLGAILGFSAAVFGGWFDTIL 106 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR +D L+SIP+ + AL++++ ++++ L+L + YR++R++AV++ M+YV+ Sbjct: 107 SRLVDLLMSIPTLIMALVVLSVLPTNLVTLILVMGVLDSTRVYRLSRAVAVDINVMDYVE 166 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AA+ RGEG +I+ E+LPN + P++++ GLRF+Y VL LS LSFL LGVQPPDADWG + Sbjct: 167 AAKLRGEGSAWIIFREILPNALSPLVSELGLRFIYAVLFLSTLSFLGLGVQPPDADWGGM 226 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSK 219 V+EN G+ G A ++PA AIA+L I VNL+ D + ++ Sbjct: 227 VKENKDGIVFGIAAALIPAGAIAALAISVNLVADWILNR 265 >mlr9213 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mlo Mesorhizobium loti Length = 274 Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 149/214 (69%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 M+ LG+D LGRD+LSR+++G R T+ +A+ AT L+ + G + AA GGW D ++ Sbjct: 47 MTAAHWLGTDNLGRDLLSRMIYGARITLFIAVLATALSFSLGAILGFSAAVFGGWFDMLL 106 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR +D L+SIP+ + L++++ S+++ L+L I YR++R++AV++ M+YV+ Sbjct: 107 SRLVDLLMSIPTLIMGLVVLSVLPSNLVTLILVMGILDSTRVYRLSRAVAVDINVMDYVE 166 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AA+ RGEG +I+ E+LPN + P++++ GLRF+Y VL LS LSFL LGVQPPDADWG++ Sbjct: 167 AAKLRGEGSGWIIFREILPNALSPLVSELGLRFIYAVLFLSTLSFLGLGVQPPDADWGAM 226 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLID 214 V+EN G+ G A ++PA AIA L I VNL+ D Sbjct: 227 VKENKDGIVFGIGAALIPAAAIAMLAISVNLVAD 260 >AGpA496 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 288 Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/213 (43%), Positives = 145/213 (68%) Query: 2 SHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVIS 61 S F +G+D LGRDMLSR+++G R T+G+A TVLA A G L AA GGW D V+S Sbjct: 65 STAFPVGTDALGRDMLSRLIWGARNTVGIAATTTVLAFALGAIAGLLAAALGGWFDLVLS 124 Query: 62 RALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQA 121 R +D ++++P + L+ ++ GS ++ L+L A+ +R+AR+ A NV M+YV+A Sbjct: 125 RIVDVMMAVPPLILTLLALSALGSGVVNLILIVAVLDSTRVFRLARATAANVMVMDYVEA 184 Query: 122 ARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLV 181 A+ RG+G+ +I+ E+LPN+ P++A+FGLRF +V L +S L+FL LG+ PP ADWG++V Sbjct: 185 AKLRGDGIAWIIRKEVLPNITAPLIAEFGLRFCFVFLTISALAFLGLGLPPPMADWGAMV 244 Query: 182 RENISGLGEGALAVIMPALAIASLTIGVNLLID 214 R+N + + G + ++PA IA LT+ +N ++D Sbjct: 245 RDNAALITFGDITPLLPAACIAVLTVSINFVVD 277 >SMa0299 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 295 Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 4/219 (1%) Query: 2 SHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVIS 61 S + +G D +GRD+ SR + G + L+ A T+L GT + L + + GGW D V Sbjct: 65 SWQHPMGLDQIGRDVFSRFMHGAHIVLMLSFAGTMLGMVAGTTLGLLSGYIGGWFDEVTQ 124 Query: 62 RALDALISIPSKMFALMMVATFGSSM----LLLVLTAAITYMPGAYRIARSLAVNVQAME 117 R ++A+ISIP AL+M+ G ++ +L+V + Y P RIAR+ A+++ E Sbjct: 125 RIVEAMISIPFLALALVMIIAAGPALAGKPVLIVFVVGLVYAPRIVRIARAAAMDIATRE 184 Query: 118 YVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADW 177 YV A RGEG W I+ E+LPN +L +F LR Y +L+ L FL G++PP +W Sbjct: 185 YVAVAELRGEGTWSIVFREILPNAANVLLVEFSLRLSYAPILIGALGFLGFGIRPPTPEW 244 Query: 178 GSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNL 216 G ++ EN + L + V P L +ASL IG NL D L Sbjct: 245 GLMISENRNLLIASPVTVFGPGLGLASLVIGFNLFTDGL 283 >mll7349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mlo Mesorhizobium loti Length = 292 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 2 SHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVIS 61 S + G+D +GRD+ SR++ G+R + +A AT+LA+ GTA+ L + G D V+S Sbjct: 71 SSEHWFGTDQIGRDVFSRVIVGSRDILTVAPLATLLATIAGTALGLLTGYFRGIVDDVVS 130 Query: 62 RALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQA 121 R L+A ++IP + AL+ + G+S +++ +++ P R RS + + ++YV A Sbjct: 131 RILEAFMAIPVVIVALLAIVALGTSKATVIVVIGLSFAPIIARTVRSAVLAERELDYVAA 190 Query: 122 ARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLV 181 A+ R E ++ M VE+LPN+I P+L + +R Y + ++ LSF+ G+QPP DWG + Sbjct: 191 AQLRHESAFHTMFVEILPNVIPPILVETTVRLGYAIFAVATLSFMGFGIQPPSPDWGLSI 250 Query: 182 RENISGLGEGA-LAVIMPALAIASLTIGVNLLIDNLR 217 N +G G V+ ALAIASL IGVNL+ D + Sbjct: 251 SSNYGMIGGGFWWTVLFDALAIASLVIGVNLVADGVH 287 >BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 305 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 119/217 (54%) Query: 2 SHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVIS 61 S + LG+D+LGRD+ SR+++G+R ++ + + A VLA G + + A F GGW D Sbjct: 79 SSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAFM 138 Query: 62 RALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQA 121 R +D+ +SIP+ + AL++++ FG + L+ +T R+ R ++++ E+V+A Sbjct: 139 RLVDSFLSIPNILLALVILSVFGPGVWTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKA 198 Query: 122 ARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLV 181 ARA G +M +LPN++ P + L ++L + LSFL LG+QPPD WG ++ Sbjct: 199 ARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWGGIL 258 Query: 182 RENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRS 218 + + P LAI +G+ L D LR Sbjct: 259 SDGRDYIATSWWLATFPGLAITLTVLGIIFLGDWLRD 295