BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0357.p (66 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanace... 117 4e-27 NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningit... 112 3e-25 NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningit... 112 3e-25 XF1206 [J] COG0227 Ribosomal protein L28 Xfa Xylella fastidiosa ... 100 1e-21 PA5316 [J] COG0227 Ribosomal protein L28 Pae Pseudomonas aeruginosa 98 5e-21 PM1151 [J] COG0227 Ribosomal protein L28 Pmu Pasteurella multocida 96 1e-20 HI0951 [J] COG0227 Ribosomal protein L28 Hin Haemophilus influenzae 95 3e-20 VC0218 [J] COG0227 Ribosomal protein L28 Vch Vibrio cholerae 92 2e-19 rpmB [J] COG0227 Ribosomal protein L28 Eco Escherichia coli K12 92 4e-19 ZrpmB [J] COG0227 Ribosomal protein L28 EcZ Escherichia coli O15... 92 4e-19 >RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanacearum Length = 77 Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 58/64 (90%), Positives = 61/64 (95%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 MVGNNVSHANNKTKRRFLPNLQNRR +VESENRWVSLR+SNAGLR+IDK GID VLADLR Sbjct: 13 MVGNNVSHANNKTKRRFLPNLQNRRFWVESENRWVSLRVSNAGLRLIDKKGIDEVLADLR 72 Query: 61 ARGE 64 ARGE Sbjct: 73 ARGE 76 >NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningitidis MC58 Length = 77 Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 54/64 (84%), Positives = 58/64 (90%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 M GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV LR+SNA LR IDK+GID VLADLR Sbjct: 13 MSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSNAALRTIDKVGIDVVLADLR 72 Query: 61 ARGE 64 ARGE Sbjct: 73 ARGE 76 >NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningitidis Z2491 Length = 77 Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 54/64 (84%), Positives = 58/64 (90%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 M GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV LR+SNA LR IDK+GID VLADLR Sbjct: 13 MSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSNAALRTIDKVGIDVVLADLR 72 Query: 61 ARGE 64 ARGE Sbjct: 73 ARGE 76 >XF1206 [J] COG0227 Ribosomal protein L28 Xfa Xylella fastidiosa 9a5c Length = 78 Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 48/66 (72%), Positives = 53/66 (80%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 GNNVSHANNKT+RRFLPNL RR +V SENRWV LR+S +R IDK GIDAVLA+LR Sbjct: 13 QTGNNVSHANNKTRRRFLPNLHKRRFWVASENRWVKLRVSTCAVRTIDKNGIDAVLAELR 72 Query: 61 ARGEKV 66 A GEKV Sbjct: 73 ASGEKV 78 >PA5316 [J] COG0227 Ribosomal protein L28 Pae Pseudomonas aeruginosa Length = 78 Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 57/65 (87%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 + GNN+SHA+NKT+RRFLPNLQ+ R +VESE R+V LR+S G+R+IDK GI+AVLADLR Sbjct: 13 VTGNNISHAHNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIEAVLADLR 72 Query: 61 ARGEK 65 ARGEK Sbjct: 73 ARGEK 77 >PM1151 [J] COG0227 Ribosomal protein L28 Pmu Pasteurella multocida Length = 78 Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 54/65 (83%) Query: 2 VGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLRA 61 VGNN SHA N TKRRFLPNL R +VESE R+V+LRL+ G+R+IDK GIDAVLAD+RA Sbjct: 14 VGNNRSHAMNATKRRFLPNLHTHRFWVESEKRFVTLRLTAKGMRIIDKKGIDAVLADIRA 73 Query: 62 RGEKV 66 RGEK+ Sbjct: 74 RGEKI 78 >HI0951 [J] COG0227 Ribosomal protein L28 Hin Haemophilus influenzae Length = 78 Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/65 (69%), Positives = 55/65 (84%) Query: 2 VGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLRA 61 VGNN SHA N T+RRFLPNL R +VESENR+V+LRL+ G+R+IDK GIDAVLA++RA Sbjct: 14 VGNNRSHAMNATRRRFLPNLHTHRFWVESENRFVTLRLTAKGMRIIDKKGIDAVLAEIRA 73 Query: 62 RGEKV 66 RGEK+ Sbjct: 74 RGEKI 78 >VC0218 [J] COG0227 Ribosomal protein L28 Vch Vibrio cholerae Length = 78 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/65 (69%), Positives = 52/65 (80%) Query: 2 VGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLRA 61 VGNN SHA N TKRRFLPNLQ R +VESE R+V LRL+ G+R+IDK GIDAVL ++RA Sbjct: 14 VGNNRSHAKNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIIDKKGIDAVLVEIRA 73 Query: 62 RGEKV 66 RGE V Sbjct: 74 RGENV 78 >rpmB [J] COG0227 Ribosomal protein L28 Eco Escherichia coli K12 Length = 78 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/65 (69%), Positives = 53/65 (81%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 + GNN SHA N TKRRFLPNL + R +VESE R+V+LR+S G+RVIDK GID VLA+LR Sbjct: 13 VTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKGIDTVLAELR 72 Query: 61 ARGEK 65 ARGEK Sbjct: 73 ARGEK 77 >ZrpmB [J] COG0227 Ribosomal protein L28 EcZ Escherichia coli O157:H7 EDL933 Length = 78 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/65 (69%), Positives = 53/65 (81%) Query: 1 MVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVIDKIGIDAVLADLR 60 + GNN SHA N TKRRFLPNL + R +VESE R+V+LR+S G+RVIDK GID VLA+LR Sbjct: 13 VTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKGIDTVLAELR 72 Query: 61 ARGEK 65 ARGEK Sbjct: 73 ARGEK 77