BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0356.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum 251 1e-66 PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa 212 6e-55 VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae 193 2e-49 PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida 190 2e-48 NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitid... 189 5e-48 NMB1038 [L] COG2003 DNA repair proteins Nme Neisseria meningitid... 189 6e-48 YPO0049 [L] COG2003 DNA repair proteins Ype Yersinia pestis 185 7e-47 HI0952 [L] COG2003 DNA repair proteins Hin Haemophilus influenzae 182 8e-46 XF0148 [L] COG2003 DNA repair proteins Xfa Xylella fastidiosa 9a5c 174 2e-43 STM3729 [L] COG2003 DNA repair proteins Sty Salmonella typhimuri... 172 5e-43 >RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum Length = 224 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 162/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ GPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA+++IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V +YSF +HGKM Sbjct: 181 EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224 >PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa Length = 224 Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 109/224 (48%), Positives = 149/224 (66%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP+ +RPRE++ + G AALSDAELLAIFLR G+ G +AVEL+ + FG L + Sbjct: 1 MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 L A GLG A QL+AVLEM RR + ++R +L S +AV DYLK L H Sbjct: 61 LEADLASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHE 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E F LFLD R++++ E LF+G++ ++VYPR+V+K L HNAA++IL HNHPSGD Sbjct: 121 QHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKRTLAHNAAALILTHNHPSGDA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 PS D +LTA L EAL ++D+R+LDHF++ S A++G + Sbjct: 181 RPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL 224 >VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae Length = 224 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 144/222 (64%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M + P E PRE++ Q GP +LSDAELLAIFLR G G N + LA ++ FGSL + Sbjct: 1 MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A + KGLG A QL+AVLEM++R + ++ + L S + YL +L R Sbjct: 61 FCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 ++E F LFLD ++++I E LF+GT+ ++VYPREV+K AL HNAA+VILAHNHPSG Sbjct: 121 QREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRALHHNAAAVILAHNHPSGVA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHG 222 EPS D R+T L +AL +++IR+LDHFVV + SFA+ G Sbjct: 181 EPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERG 222 >PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida Length = 224 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 141/210 (67%) Query: 12 PRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAVERDLPLG 71 PRE++ + G AL+D ELLAIFLR GI G + ++L+ +Q F SL G++ A + + Sbjct: 12 PREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQL 71 Query: 72 KGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHREQECFVALFLD 131 KGLG QL+A EMS+R + +++L + ++ V YL+ L ++E+E F LFLD Sbjct: 72 KGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLD 131 Query: 132 VRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDPEPSDHDLRLTA 191 +++LI EE+F GT+ + ++PRE+IK+AL NAA++ILAHNHPSG+PEPS D +T Sbjct: 132 NQHRLIKQEEMFLGTINCTTIHPREIIKSALFCNAAALILAHNHPSGNPEPSASDKMVTT 191 Query: 192 ALDEALQMMDIRLLDHFVVAGTRLYSFADH 221 + A ++++IR+LDHFV+ YSFA++ Sbjct: 192 KIQAAAELVEIRILDHFVIGKGCYYSFAEN 221 >NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitidis Z2491 Length = 225 Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 139/224 (62%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I WP+ +RPRE++ + G AALSDAELLAI LRVG G +AV+LA +Q FGSL + Sbjct: 1 MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 + A L KG+G A+ TQ V E+ RR + +++ +L+ V DYL+ L Sbjct: 61 MSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQE 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E VAL L+ +N+LI EL +GT+ ++ +Y RE++K AL A S+I+AHNHP G P Sbjct: 121 KVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKLALDEYADSLIIAHNHPGGSP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D+ T L +A+ ++D+ LLDHF+V + SF G M Sbjct: 181 EPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLM 224 >NMB1038 [L] COG2003 DNA repair proteins Nme Neisseria meningitidis MC58 Length = 225 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 139/224 (62%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I WP+ +RPRE++ + G AALSDAELLAI LRVG G +AV+LA +Q FGSL + Sbjct: 1 MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 + A L KG+G A+ TQ V E+ RR + +++ +L+ V DYL+ L Sbjct: 61 MSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQE 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E VAL L+ +N+LI EL +GT+ ++ +Y RE++K AL A S+I+AHNHP G P Sbjct: 121 KVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKLALDEYADSLIIAHNHPGGSP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D+ T L +A+ ++D+ LLDHF+V + SF G M Sbjct: 181 EPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLM 224 >YPO0049 [L] COG2003 DNA repair proteins Ype Yersinia pestis Length = 222 Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 146/220 (66%) Query: 5 DWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAV 64 +W + PRE++ ++G A L+DAELLAIFLR GIPG + +++A I+ FGSL G++ A Sbjct: 3 EWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLISAD 62 Query: 65 ERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHREQEC 124 + L KG+G + +Q++A+ E++ R + + +L + +L+ +L+HRE+E Sbjct: 63 YQTLCAHKGIGASKYSQIQAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHREREI 122 Query: 125 FVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDPEPSD 184 F+ +FLD ++++I EE+F GT++ V+PRE+++ AL+ NAA++ILAHNHPSG EPS Sbjct: 123 FLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREALKVNAAALILAHNHPSGKAEPSQ 182 Query: 185 HDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 D +T + +A ++DIR+LDH VV SFA+ G + Sbjct: 183 ADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL 222 >HI0952 [L] COG2003 DNA repair proteins Hin Haemophilus influenzae Length = 234 Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 96/213 (45%), Positives = 132/213 (61%) Query: 9 EQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAVERDL 68 E PRE++ G ALSD ELLAIFLR GI G + L+ + FG L +L A ++ Sbjct: 19 ELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGPLHALLSADKKAF 78 Query: 69 PLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHREQECFVAL 128 KGLG QL+A+ EM++R + M ++N V +L L H E+E F+ L Sbjct: 79 CSVKGLGITQFIQLQAITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVL 138 Query: 129 FLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDPEPSDHDLR 188 FLD +++LI E LF GT+ SAVYPRE+IK AL NAA++ILAHNHPSG EPS D Sbjct: 139 FLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALYCNAAALILAHNHPSGITEPSYSDQL 198 Query: 189 LTAALDEALQMMDIRLLDHFVVAGTRLYSFADH 221 +T + +A ++M+IR+LDH +V + YSFA++ Sbjct: 199 ITKKIQDAAELMEIRVLDHLIVGKSDCYSFAEN 231 >XF0148 [L] COG2003 DNA repair proteins Xfa Xylella fastidiosa 9a5c Length = 232 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 132/224 (58%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I +WP +RPRE++ HG A LSDAELLAIFL G+ G +AV+ A + G L + Sbjct: 9 MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLREL 68 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 L DL GLG A +L A LE+S R + ++ ++ + G Y L Sbjct: 69 LDRPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRAN 128 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E F LFLD R++ I EELF GT+ + V+PREV++ AL NAA+VI+ HNHPSG+ Sbjct: 129 PNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNR 188 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D +T L AL ++D+RL+DHFV+ SFA+HG + Sbjct: 189 EPSPADRMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL 232 >STM3729 [L] COG2003 DNA repair proteins Sty Salmonella typhimurium LT2 Length = 221 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 131/218 (60%) Query: 5 DWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGVLGAV 64 D E PRE+M + G A+LSD ELLA+FLR G PGK+ + LA E +Q FGSL G+L A Sbjct: 2 DTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSAD 61 Query: 65 ERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHREQEC 124 G+G A QL+ + E++RR +M L S ++L+ L E+E Sbjct: 62 FAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREI 121 Query: 125 FVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDPEPSD 184 F+ +FLD +++++ LF GTL V+PRE+++ A++ NA++VILAHNHPSG EPS Sbjct: 122 FLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIKLNASAVILAHNHPSGCAEPSK 181 Query: 185 HDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHG 222 D +T + + Q MDIR+LDH ++ SFA+ G Sbjct: 182 ADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERG 219