BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0346.p (272 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3013 [J] COG0092 Ribosomal protein S3 Rso Ralstonia solanacearum 395 e-110 NMB0148 [J] COG0092 Ribosomal protein S3 Nme Neisseria meningiti... 331 9e-91 NMA0123 [J] COG0092 Ribosomal protein S3 NmA Neisseria meningiti... 331 9e-91 VC2590 [J] COG0092 Ribosomal protein S3 Vch Vibrio cholerae 309 4e-84 PA4257 [J] COG0092 Ribosomal protein S3 Pae Pseudomonas aeruginosa 306 5e-83 YPO0216 [J] COG0092 Ribosomal protein S3 Ype Yersinia pestis 305 9e-83 PM1409 [J] COG0092 Ribosomal protein S3 Pmu Pasteurella multocida 303 2e-82 rpsC [J] COG0092 Ribosomal protein S3 Eco Escherichia coli K12 302 5e-82 STM3434 [J] COG0092 Ribosomal protein S3 Sty Salmonella typhimur... 302 5e-82 ECs4179 [J] COG0092 Ribosomal protein S3 Ecs Escherichia coli O1... 302 5e-82 >RSc3013 [J] COG0092 Ribosomal protein S3 Rso Ralstonia solanacearum Length = 264 Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L ++PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV-VEEPQEERRK 225 >NMB0148 [J] COG0092 Ribosomal protein S3 Nme Neisseria meningitidis MC58 Length = 230 Score = 331 bits (849), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 190/227 (83%), Gaps = 7/227 (3%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKI+PTGFRLAVT++W S+W+A + +F+ +L +D+ VR YL++KL NASVGRVVIERP Sbjct: 1 MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ARITI+S+RPGVVIGKKGEDIEVLK L LMGVPVHVNIEEIR+PE DAQ+IAD I Sbjct: 61 AKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVNIEEIRRPELDAQIIADGI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKR+ FRRAMKRAMQNAMR GA+GIKIM+SGRLNG +IAR+EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRR 227 ++DY EA TTYG++G+KVWVY E + +PE + K+R Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYT-------EGNIKSSKPEHESKQR 220 >NMA0123 [J] COG0092 Ribosomal protein S3 NmA Neisseria meningitidis Z2491 Length = 230 Score = 331 bits (849), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 190/227 (83%), Gaps = 7/227 (3%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKI+PTGFRLAVT++W S+W+A + +F+ +L +D+ VR YL++KL NASVGRVVIERP Sbjct: 1 MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ARITI+S+RPGVVIGKKGEDIEVLK L LMGVPVHVNIEEIR+PE DAQ+IAD I Sbjct: 61 AKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVNIEEIRRPELDAQIIADGI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKR+ FRRAMKRAMQNAMR GA+GIKIM+SGRLNG +IAR+EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRR 227 ++DY EA TTYG++G+KVWVY E + +PE + K+R Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYT-------EGNIKSSKPEHESKQR 220 >VC2590 [J] COG0092 Ribosomal protein S3 Vch Vibrio cholerae Length = 233 Score = 309 bits (791), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 142/227 (62%), Positives = 179/227 (78%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W + W+A +FAD L+ D KVR YL K+L NAS+ R+VIERP Sbjct: 1 MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPGVVIGKKGED+E L++A+AK+ GVP +NI E+RKPE D QL+ADSI Sbjct: 61 AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIAR+EWYREGRVPLHTLRA Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRR 227 DIDY A TTYG+IGVKVW++KG+ L + EP+ DK ++ Sbjct: 181 DIDYATSSAHTTYGVIGVKVWIFKGEILGGMPAATEAAEPKADKPKK 227 >PA4257 [J] COG0092 Ribosomal protein S3 Pae Pseudomonas aeruginosa Length = 228 Score = 306 bits (783), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 143/206 (69%), Positives = 169/206 (82%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + S WYA N+AD L DLKVR YL+ KLK+ASV R+ I RP Sbjct: 1 MGQKVHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQDKLKSASVSRIDIHRP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 A+ ARITI+++RPG+VIGKKGED+E L+ L K MGVPVH+NIEEIRKPE DA L+A S+ Sbjct: 61 AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+R+MFRRAMKRA+QNAMR+GA+GIKI SGRL G EIARTEWYREGRVPLHTLRA Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGD 206 DIDY EA TTYG+IGVKVW++KG+ Sbjct: 181 DIDYATYEAHTTYGVIGVKVWIFKGE 206 >YPO0216 [J] COG0092 Ribosomal protein S3 Ype Yersinia pestis Length = 232 Score = 305 bits (780), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 142/229 (62%), Positives = 177/229 (77%), Gaps = 3/229 (1%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W S WYA FAD L+ D KVR +L K+L ASV R+VIERP Sbjct: 1 MGQKVHPNGIRLGIVKAWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPG+VIGKKGED+E L+ +A + GVP +NI E+RKPE DA+L+ADSI Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIARTEWYREGRVPLHTLRA Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRL---ANGESPVLVGEPEDDKKR 226 DIDY EA TTYG+IGVKVW++KG+ L A E P +P+ +++ Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEPAAQPKKQQRK 229 >PM1409 [J] COG0092 Ribosomal protein S3 Pmu Pasteurella multocida Length = 235 Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 182/233 (78%), Gaps = 6/233 (2%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W S W+A +FAD L+ D KVR +L K+L NASV R+ IERP Sbjct: 1 MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPG+VIGKKGED+E L++A+A + GVP +NI E++KPE DA+L+ADSI Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAAIAGVPAQINIAEVKKPELDAKLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIAR+EWYREGRVPLHTLRA Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPED---DKKRRGPR 230 DIDY EA TTYG+IG+KVW++KG+ L + + +PE DK ++ PR Sbjct: 181 DIDYNTAEAHTTYGVIGIKVWIFKGEILGGMAA---IAQPEQQPADKPKKAPR 230 >rpsC [J] COG0092 Ribosomal protein S3 Eco Escherichia coli K12 Length = 233 Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 145/243 (59%), Positives = 180/243 (74%), Gaps = 16/243 (6%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W S W+A FAD L+ D KVR YL K+L ASV R+VIERP Sbjct: 1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPG+VIGKKGED+E L+ +A + GVP +NI E+RKPE DA+L+ADSI Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIARTEWYREGRVPLHTLRA Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDY EA TTYG+IGVKVW++KG+ L + V +PE KP A+P Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAA---VEQPE-------------KPAAQP 224 Query: 241 RSK 243 + + Sbjct: 225 KKQ 227 >STM3434 [J] COG0092 Ribosomal protein S3 Sty Salmonella typhimurium LT2 Length = 233 Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 145/243 (59%), Positives = 180/243 (74%), Gaps = 16/243 (6%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W S W+A FAD L+ D KVR YL K+L ASV R+VIERP Sbjct: 1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPG+VIGKKGED+E L+ +A + GVP +NI E+RKPE DA+L+ADSI Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIARTEWYREGRVPLHTLRA Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDY EA TTYG+IGVKVW++KG+ L + V +PE KP A+P Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAA---VEQPE-------------KPAAQP 224 Query: 241 RSK 243 + + Sbjct: 225 KKQ 227 >ECs4179 [J] COG0092 Ribosomal protein S3 Ecs Escherichia coli O157:H7 Length = 233 Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 145/243 (59%), Positives = 180/243 (74%), Gaps = 16/243 (6%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQK+HP G RL + + W S W+A FAD L+ D KVR YL K+L ASV R+VIERP Sbjct: 1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AK+ R+TI+++RPG+VIGKKGED+E L+ +A + GVP +NI E+RKPE DA+L+ADSI Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QLE+R+MFRRAMKRA+QNAMRLGA+GIK+ SGRL G EIARTEWYREGRVPLHTLRA Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDY EA TTYG+IGVKVW++KG+ L + V +PE KP A+P Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAA---VEQPE-------------KPAAQP 224 Query: 241 RSK 243 + + Sbjct: 225 KKQ 227