BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0336.p (122 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3003 [J] COG0256 Ribosomal protein L18 Rso Ralstonia solanace... 160 5e-40 NMB0158 [J] COG0256 Ribosomal protein L18 Nme Neisseria meningit... 145 2e-35 NMA0113 [J] COG0256 Ribosomal protein L18 NmA Neisseria meningit... 145 2e-35 BU508 [J] COG0256 Ribosomal protein L18 Buc Buchnera sp. APS 120 5e-28 YPO0225 [J] COG0256 Ribosomal protein L18 Ype Yersinia pestis 118 3e-27 PA4247 [J] COG0256 Ribosomal protein L18 Pae Pseudomonas aeruginosa 109 2e-24 all4200 [J] COG0256 Ribosomal protein L18 Nos Nostoc sp. PCC 7120 102 1e-22 rplR [J] COG0256 Ribosomal protein L18 Eco Escherichia coli K12 102 2e-22 ZrplR [J] COG0256 Ribosomal protein L18 EcZ Escherichia coli O15... 102 2e-22 ECs4169 [J] COG0256 Ribosomal protein L18 Ecs Escherichia coli O... 102 2e-22 >RSc3003 [J] COG0256 Ribosomal protein L18 Rso Ralstonia solanacearum Length = 118 Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 88/121 (72%), Positives = 94/121 (77%), Gaps = 4/121 (3%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDAN-VLASASTLEAEVRA 61 M+K SRLRRA QTR KIAEL V RLAVHRTN HIYA V D VLASAST EAEVR Sbjct: 1 MNKNDSRLRRARQTRLKIAELNVARLAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRK 60 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 +L G GGN AAA L+GKR+AEKA AG+ VAFDRSGFRYHGRVKALA+AAREAGLK Sbjct: 61 EL---NGNGGNTAAATLVGKRIAEKAKAAGIEAVAFDRSGFRYHGRVKALADAAREAGLK 117 Query: 122 F 122 F Sbjct: 118 F 118 >NMB0158 [J] COG0256 Ribosomal protein L18 Nme Neisseria meningitidis MC58 Length = 117 Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 92/121 (76%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDAN-VLASASTLEAEVRA 61 MDK +RLRRA +TRA+IA+LK+ RL V R+N HIYA VI + + VLA ASTLEAEVR Sbjct: 1 MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVR- 59 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 G G N AAA++GKR+AEKA AGV +VAFDRSGF+YHGRVKALAEAARE GL Sbjct: 60 ---GSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGRVKALAEAARENGLS 116 Query: 122 F 122 F Sbjct: 117 F 117 >NMA0113 [J] COG0256 Ribosomal protein L18 NmA Neisseria meningitidis Z2491 Length = 117 Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 92/121 (76%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDAN-VLASASTLEAEVRA 61 MDK +RLRRA +TRA+IA+LK+ RL V R+N HIYA VI + + VLA ASTLEAEVR Sbjct: 1 MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVR- 59 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 G G N AAA++GKR+AEKA AGV +VAFDRSGF+YHGRVKALAEAARE GL Sbjct: 60 ---GSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGRVKALAEAARENGLS 116 Query: 122 F 122 F Sbjct: 117 F 117 >BU508 [J] COG0256 Ribosomal protein L18 Buc Buchnera sp. APS Length = 122 Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 5/120 (4%) Query: 4 DKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGP-DANVLASASTLEAEVRAQ 62 +K SR+RR+ +TR KI +L RL VHRT+ H+YA +I +A VL ASTLE ++ Sbjct: 7 NKIISRIRRSMKTRCKIKKLGAIRLVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCS 66 Query: 63 LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122 L GN AAA IGK +AE+AL G++ V+FDRSGF+YHGRV+ LAE+ARE GLKF Sbjct: 67 LKYT----GNKEAAAKIGKIIAERALSKGISHVSFDRSGFKYHGRVQVLAESAREVGLKF 122 >YPO0225 [J] COG0256 Ribosomal protein L18 Ype Yersinia pestis Length = 117 Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/121 (57%), Positives = 90/121 (74%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPD-ANVLASASTLEAEVRA 61 MDKK +R+RRAT+ R K+ EL RL VHRT HIYA VI P+ + +L +AST+E + Sbjct: 1 MDKKAARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEILVAASTVEKAINE 60 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 QL GN AAA +GK +AE+AL+ G+T+V+FDRSGF+YHGRV+ALA+AAREAGL+ Sbjct: 61 QLK----YAGNKDAAAAVGKTIAERALEKGITKVSFDRSGFQYHGRVQALADAAREAGLQ 116 Query: 122 F 122 F Sbjct: 117 F 117 >PA4247 [J] COG0256 Ribosomal protein L18 Pae Pseudomonas aeruginosa Length = 116 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/119 (57%), Positives = 87/119 (73%), Gaps = 7/119 (5%) Query: 5 KKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDA-NVLASASTLEAEVRAQL 63 KK++RLRRA + R K+ EL+ RL V+R++ HIYA VI D VLASASTL+ ++R Sbjct: 4 KKETRLRRARKARLKMRELETVRLCVYRSSQHIYAQVIAADGGKVLASASTLDKDLR--- 60 Query: 64 AGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122 G GN AA +G+ VAE+A AGVT+VAFDRSGF+YHGRVKALA+AARE GL+F Sbjct: 61 ---EGATGNIDAAKKVGQLVAERAKAAGVTQVAFDRSGFKYHGRVKALADAAREGGLEF 116 >all4200 [J] COG0256 Ribosomal protein L18 Nos Nostoc sp. PCC 7120 Length = 120 Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 6/124 (4%) Query: 1 LTMDKKQSRLRRATQTRAKI-AELKVNRLAVHRTNTHIYASVIGP-DANVLASASTLEAE 58 + + +++S+ RR + R K+ + RLAV R+N HIYA VI + LA+AST+E E Sbjct: 1 MKLTRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPE 60 Query: 59 VRAQLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREA 118 +++ LA G N A+A IGK +A ++L+ G+T+V FDR G YHGR+KALAEAAREA Sbjct: 61 LKSSLAS----GSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREA 116 Query: 119 GLKF 122 GL F Sbjct: 117 GLDF 120 >rplR [J] COG0256 Ribosomal protein L18 Eco Escherichia coli K12 Length = 117 Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/121 (57%), Positives = 89/121 (73%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPD-ANVLASASTLEAEVRA 61 MDKK +R+RRAT+ R K+ EL RL VHRT HIYA VI P+ + VL +AST+E + Sbjct: 1 MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 60 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 QL GN AAA +GK VAE+AL+ G+ +V+FDRSGF+YHGRV+ALA+AAREAGL+ Sbjct: 61 QLK----YTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 Query: 122 F 122 F Sbjct: 117 F 117 >ZrplR [J] COG0256 Ribosomal protein L18 EcZ Escherichia coli O157:H7 EDL933 Length = 117 Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/121 (57%), Positives = 89/121 (73%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPD-ANVLASASTLEAEVRA 61 MDKK +R+RRAT+ R K+ EL RL VHRT HIYA VI P+ + VL +AST+E + Sbjct: 1 MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 60 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 QL GN AAA +GK VAE+AL+ G+ +V+FDRSGF+YHGRV+ALA+AAREAGL+ Sbjct: 61 QLK----YTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 Query: 122 F 122 F Sbjct: 117 F 117 >ECs4169 [J] COG0256 Ribosomal protein L18 Ecs Escherichia coli O157:H7 Length = 117 Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/121 (57%), Positives = 89/121 (73%), Gaps = 5/121 (4%) Query: 3 MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPD-ANVLASASTLEAEVRA 61 MDKK +R+RRAT+ R K+ EL RL VHRT HIYA VI P+ + VL +AST+E + Sbjct: 1 MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 60 Query: 62 QLAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLK 121 QL GN AAA +GK VAE+AL+ G+ +V+FDRSGF+YHGRV+ALA+AAREAGL+ Sbjct: 61 QLK----YTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 116 Query: 122 F 122 F Sbjct: 117 F 117