BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0254.p (314 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transd... 179 8e-45 AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 176 5e-44 YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transd... 174 2e-43 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 171 2e-42 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 169 1e-41 AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transd... 128 1e-29 PA2204 [ET] COG0834 ABC-type amino acid transport/signal transdu... 121 2e-27 mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transd... 115 2e-25 AGl669 [ET] COG0834 ABC-type amino acid transport/signal transdu... 110 6e-24 Cj0982c [ET] COG0834 ABC-type amino acid transport/signal transd... 108 1e-23 >SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 265 Score = 179 bits (454), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 147/243 (60%) Query: 64 LLLGAGAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLE 123 + +GA A A LD I+A KK+ + +DL+VPP+ + +++++ G DV+ A+ +AKD G+E Sbjct: 18 ITVGAATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVE 77 Query: 124 LEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITS 183 LE+VP T +R+P LQT K D V+++F I ERA + FS PY ++ AP+ I S Sbjct: 78 LELVPVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKS 137 Query: 184 PADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLK 243 ADLAGK++ RGT +++ L+ + RFDDD+T++ A+VSGQ D T + Sbjct: 138 LADLAGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAA 197 Query: 244 VVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTIYKKYHEA 303 + ++ P R E K T + VGLR+ +P L ++ + + ++GEL IY+K+ + Sbjct: 198 QLQERYPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKT 257 Query: 304 ELP 306 +P Sbjct: 258 PIP 260 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 154/259 (59%), Gaps = 2/259 (0%) Query: 53 ARRVQMALLGL-LLLG-AGAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDV 110 +RR+ +A+ + + LG + AA AD L I + +RVA+ PP+ + G D+ Sbjct: 3 SRRLLLAIAAVSVTLGFSPAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQGYDI 62 Query: 111 ETAQRMAKDFGLELEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPIL 170 + A + + G+++E+VP T NRVPYLQTNK D+VIS+ P+R KVIDFS YAP Sbjct: 63 DVANLIGEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAYAPFF 122 Query: 171 VVVGAPRSMKITSPADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSG 230 V AP S+ + DL+GK I TRG D ELTK+AP+ TI R++D+ +++A ++G Sbjct: 123 NGVFAPDSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISAFLAG 182 Query: 231 QADIWATSPMLLKVVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRN 290 Q + AT ++ + KNP + E K +K + +GL K +P L EK++ I T + Sbjct: 183 QVEAVATGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIATAKTD 242 Query: 291 GELNTIYKKYHEAELPPEI 309 G LNTI +K+ + +LP ++ Sbjct: 243 GSLNTIAQKWLKTDLPKDL 261 >YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 262 Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 147/247 (59%) Query: 63 LLLLGAGAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGL 122 L+L+ A A ADQL+ I LRVA+ PP+ L+ G D++ AQ +A L Sbjct: 14 LVLVQAPAVLADQLEKIQQRGVLRVAVPQDFPPFGSVGTDLQPQGYDIDMAQYLADKMKL 73 Query: 123 ELEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKIT 182 +L++V T NRVPYLQT+K D+VIS+ PER K I FS YAP + V + ++ Sbjct: 74 KLQLVSVTSANRVPYLQTDKVDLVISSLGKNPEREKAIAFSRAYAPFFLGVFGAKDDELK 133 Query: 183 SPADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLL 242 P LAGK I TRG D L++IAP +A I R++D+ T+++A +SGQ + AT +++ Sbjct: 134 QPEQLAGKTIGVTRGAVEDMVLSEIAPKAAQIRRYEDNNTTLSAYLSGQVNYLATGNLVI 193 Query: 243 KVVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTIYKKYHE 302 + ++NP + +K LK + +GLR+GEP LK K+D I L++ LN + +K+ + Sbjct: 194 SALARQNPKQAPVAKFMLKDSPCYIGLRQGEPALKAKVDALIGDALQDNTLNGLSEKWLK 253 Query: 303 AELPPEI 309 A LP ++ Sbjct: 254 APLPADL 260 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 152/256 (59%), Gaps = 3/256 (1%) Query: 53 ARRVQMALLGLLLLGA--GAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDV 110 +RR+ +++LG ++ A A ++TI +A ++V + + PP+ + D + G D Sbjct: 10 SRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPDGYDA 69 Query: 111 ETAQRMAKDFGLELEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPIL 170 + A+ +AK+ G+E+ +VP T NR+PYLQ+N+ D+++++ IT ERAK +DFS PYA I Sbjct: 70 DVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPYAGIS 129 Query: 171 VVVGAPRSMKITSPADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSG 230 + V + +T P DLAGK I R +T D TKIAP A I RFDDDA+++ A++SG Sbjct: 130 IGVFGAADLAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQALLSG 189 Query: 231 QADIWATSPMLLKVVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRN 290 Q ++ S ++ + P R KL L + + +RKG + + ++G++ + Sbjct: 190 QVELIGVSNVVAAQIEAAAPGR-FNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDKVKAD 248 Query: 291 GELNTIYKKYHEAELP 306 G+LN I++K+ + LP Sbjct: 249 GQLNAIHEKWLGSPLP 264 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 140/239 (58%) Query: 71 AQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTT 130 A AD L I A +RVAI PP+ L+L G D++ A +AK+ G++ E+VP T Sbjct: 29 AHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELVPVT 88 Query: 131 LTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGK 190 TNR+P+L T K D+VIS+ ERAKVIDF+ YAP V P+ + I +PADLAGK Sbjct: 89 STNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADLAGK 148 Query: 191 KIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNP 250 I TRG+T D LT +AP+SATI R++D+ + + + GQ + ++ VN++ Sbjct: 149 TIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNERTR 208 Query: 251 SRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTIYKKYHEAELPPEI 309 R ++ K ++ VG+ KGEP L EK++ I +G LN + +++ + LP ++ Sbjct: 209 LRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLPAKL 267 >AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 259 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 1/220 (0%) Query: 74 DQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTLTN 133 D L + + KLRV + L P+ KD + + G DVE A+ MAKD ELE+VP T + Sbjct: 24 DTLADVTSNGKLRVGVLLDAAPWGYKDAEGKDTGLDVELARIMAKDLNAELEIVPLTGAS 83 Query: 134 RVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKKII 193 R+P L +K D++I+A TPERA+ + FS PYA + + V KI + LAGK+I Sbjct: 84 RIPSLLADKVDVLIAAAGATPERAQQVMFSQPYAAVSLGVFGGDGEKIDDVSGLAGKQIA 143 Query: 194 ATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSRD 253 +G+T D LT AP + RF+D +++ A ++GQAD +A + + V NP ++ Sbjct: 144 VAKGSTLDTWLTDNAP-EVKLVRFEDTPSAIAAFLAGQADYFAENSAIAVKVADDNPGKN 202 Query: 254 IESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGEL 293 + ++ + VG+++GE I+ ++ + NG+L Sbjct: 203 VAIVYRIRLSPAHVGVKQGEQNFLNWINTFLFFHNMNGDL 242 >PA2204 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 268 Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 13/245 (5%) Query: 64 LLLGAGAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLI-GSDVETAQRMAKDFGL 122 L L +G AQAD+L+ I A LRVA + PP+ D K + I G DV+ A+ +A G+ Sbjct: 12 LALISGLAQADRLEDIRKAGVLRVASFDSNPPFGFVDAKSKQIEGLDVDYAKALADKLGV 71 Query: 123 ELEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPY---APILVVVGAPRSM 179 L+V+PT NR+P L NK D+V++ F+ITPERA+ +DFS+PY +V + Sbjct: 72 RLQVLPTNPANRIPLLTANKVDLVLANFTITPERAQQVDFSIPYFSSGQQFIV----KKG 127 Query: 180 KITSPADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQAD-IWATS 238 +TSP L ++ +GT N+ L + P + I +DD + TA+ +GQ I Sbjct: 128 TLTSPEVLNKWRVGVDKGTVNEGVLREKFPGAKVIA-YDDTPFAFTALRNGQVQAITQDG 186 Query: 239 PMLLKVVNQKNPSRDIES--KLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTI 296 P L+ ++ P RD T+ +L+ VG+ KGE L E +D +R ++G+ I Sbjct: 187 PKLIGLLANV-PDRDKYEVPPFTISNDLIGVGIPKGEKALTEFVDKSLRELEQDGQAQKI 245 Query: 297 YKKYH 301 Y + Sbjct: 246 YDTWF 250 >mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 269 Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 129/259 (49%), Gaps = 8/259 (3%) Query: 59 ALLGLLLLGAG-------AAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVE 111 ++ +L+LGA AA AD L I A + V + PP+S + L G D++ Sbjct: 10 SIAAILVLGAAGLGIATQAANADALADITKAGTINVGVFADFPPFSSASADMSLKGYDMD 69 Query: 112 TAQRMAKDFGLELEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILV 171 AQ +A ++L V T NR+PYL ++ DI++S + ER +VIDF+ YAP + Sbjct: 70 VAQYIADTLKVKLNPVAVTGQNRIPYLNDHRVDILMS-VGYSKEREQVIDFAAAYAPYYI 128 Query: 172 VVGAPRSMKITSPADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQ 231 V P +M + DLA K I RGT D LT+ AP+SA I RFD+ + + A +SGQ Sbjct: 129 AVIGPAAMSVKGKEDLADKSIAVNRGTLEDTSLTEAAPASADIKRFDNYNSVIQAFISGQ 188 Query: 232 ADIWATSPMLLKVVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNG 291 + + V K E K L + +GL K E LK+ ++ I L +G Sbjct: 189 TQLMVVGNDVGAQVLAKQDVLKPEQKFQLLTSPSHIGLNKNEDGLKKAVNDAIAKMLADG 248 Query: 292 ELNTIYKKYHEAELPPEIL 310 +L+ K + + L P+ L Sbjct: 249 KLDESSKAWLKTPLNPDNL 267 >AGl669 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 278 Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 1/242 (0%) Query: 65 LLGAGAAQADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLEL 124 +L A A L+ ++ K+ + I P+ + G D + A+ A GL++ Sbjct: 24 ILTPAGADARTLEEAKSSGKIVIGIQGDNAPWGFINSSGVQEGYDADLARGFADYLGLKV 83 Query: 125 EVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSP 184 E VP + NR+P L+T K D + ++ +TPERAK + ++ PYA ++ V A + KI + Sbjct: 84 EFVPLAVANRIPSLRTGKVDALFASMGMTPERAKNVQYAQPYAHNVMSVYATKDKKIANF 143 Query: 185 ADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKV 244 DL G + A + + D LT A + A I RFDDDA ++ A++SGQ + + Sbjct: 144 DDLTGMTVGAPKSSPMDTALTAGAGTKANILRFDDDAATIQAILSGQIEAIGGNQFYGDR 203 Query: 245 VNQKNPSRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTIYKKYHEAE 304 + +D E K L + R GE E ++ W+ NG+L +Y K+ + Sbjct: 204 LAAAG-GKDYEVKFDLVTLYNSAATRPGEKDWNEALNAWLDKAKANGDLAKVYAKWMKRP 262 Query: 305 LP 306 +P Sbjct: 263 VP 264 >Cj0982c [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Cje Campylobacter jejuni Length = 279 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%) Query: 74 DQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKD-FGLE--LEVVPTT 130 + LD I +R+ + PP+ D+K G D+ A+R+AK+ FG E ++ V Sbjct: 30 NSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVE 89 Query: 131 LTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGK 190 NRV +L++NK DI+++ F+ TP+RA+ +DF PY + + V P+ ITS DL K Sbjct: 90 AANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDK 149 Query: 191 KIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNP 250 ++ +GTT D T+ P+ T+ ++D + + A++ + D + LL + +P Sbjct: 150 TLLLNKGTTADAYFTQNYPNIKTL-KYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHP 208 Query: 251 SRDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLRNGELNTIYKKYHE 302 + K +++A ++KG+ LKE ID I ++ G+ +K Y E Sbjct: 209 DFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLI---IKLGQEQFFHKAYDE 257