BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0250.p (239 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc5113 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 197 2e-50 AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 149 6e-36 SMb20441 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 129 4e-30 CC2813 Non COG 122 8e-28 CC0986 Non COG 118 1e-26 YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis 108 8e-24 HI0054 [K] COG2186 Transcriptional regulators Hin Haemophilus in... 107 2e-23 uxuR [K] COG2186 Transcriptional regulators Eco Escherichia coli... 107 2e-23 ECs5283 [K] COG2186 Transcriptional regulators Ecs Escherichia c... 106 4e-23 ZuxuR [K] COG2186 Transcriptional regulators EcZ Escherichia col... 106 5e-23 >AGc5113 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 230 Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/229 (47%), Positives = 146/229 (63%), Gaps = 4/229 (1%) Query: 5 KPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGR 64 K + RRLY QIAD++R ++ F RLP ER LA++LGVSRPS+REAL+ALE++ Sbjct: 6 KIAEPRRLYQQIADQIRELIDVGEFLPGTRLPAERELAQKLGVSRPSLREALIALEIDNT 65 Query: 65 VEIRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDI 124 VEIRMGSGVY++ A K +G+S S++M ARA EGA + L A I Sbjct: 66 VEIRMGSGVYVSTEALQTTHH----TKSLGDSPSELMQARAALEGATIVLAANRMTDETI 121 Query: 125 KALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLL 184 ALR I +TM++E +AG+ P DR FH+ IA +GN VL + VA L+DER PISA+L Sbjct: 122 AALRQILNTMQKEIEAGRKPLDQDRLFHVTIAEQSGNSVLARLVANLFDERHSPISAQLR 181 Query: 185 DHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMST 233 +E D+W AL EH IL A+E +D + AQAAM HL+ S +R + + Sbjct: 182 VKFEDRDTWTRALQEHEAILAALELKDPLLAQAAMHIHLEGSKRRWVDS 230 >AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 8 DSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEI 67 + RRLY +A+++R ++ T RLP ER LAE+ GVSRP++REAL+ LE+EG + I Sbjct: 6 EPRRLYRLVAEQIRLLIESGELTEGQRLPAERDLAERFGVSRPTVREALIVLEVEGHIHI 65 Query: 68 RMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKAL 127 RMGSGVY+ A +++ P PD + +I+ AR I E AI A LA P I L Sbjct: 66 RMGSGVYVNAAGRQAREKPPVPD---AHGPFEILQARCIIESAIAEEAARLATPECIAKL 122 Query: 128 RAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQ-DPISAKLLDH 186 I + M + DR FH IA + GN L + +YDER P KL + Sbjct: 123 DDIIERMAGALDSSPQALNFDRAFHTAIADIIGNSALNRFTGLIYDERSLSPFFEKLASY 182 Query: 187 YEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKR 229 +E +W A+ EHR I +AI A D A+ AM++HL +S KR Sbjct: 183 FEGPYTWNLAVQEHRAIRDAIAANDPEGAREAMRQHLTLSQKR 225 >SMb20441 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 246 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 7 TDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVE 66 +SRRLY Q+AD++R ++ + RLP ER LA+ GVSRP+IREAL+ LE+EG ++ Sbjct: 5 VESRRLYRQVADQMRALIERGELAHGSRLPAERELAQMFGVSRPTIREALIVLEVEGFID 64 Query: 67 IRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKA 126 IRMGSG+Y+T E +++ ARA+ E AI A LA+P I Sbjct: 65 IRMGSGIYVTAR----PAPAADAPPEDFEGPFELLRARAVVECAIAEEAARLARPEHISV 120 Query: 127 LRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDH 186 L M + + A DR+FH+ ++ + N L + V ++D R P KL + Sbjct: 121 LDDNLARMAAALEDRRLALAIDREFHVIVSSIIANQTLNRFVGSIHDMRMTPYFEKLASY 180 Query: 187 YEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTM 234 +E ++W A+ EHR I +AI D A+AAM+ HL S R ++ Sbjct: 181 FENTETWRAAMEEHRVIRDAIALGDPAAARAAMRAHLDQSQLRLSASF 228 >CC2813 Non COG Length = 249 Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 17/224 (7%) Query: 7 TDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVE 66 +D+ +LY +IAD + + + RLP ER LAEQ GVSRP++REA++ALE+ G +E Sbjct: 2 SDNVKLYRKIADSVADDIEAGRYRLGDRLPTERELAEQFGVSRPTLREAMIALEMLGMIE 61 Query: 67 IRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKA 126 R G G+Y+T A P P+P+ + +++ AR +FEG AL A I A Sbjct: 62 ARHGLGIYVTATARPLA---PSPEIDFEIGAFELIEARRLFEGEAAALAATSITDEQIAA 118 Query: 127 LRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQ-DPISAKLLD 185 L + M E + A DR+FH+ IAR TGN ++ T+ L+D R P++ +L Sbjct: 119 LEGLLTRMHEEEEIRGEDA--DREFHLTIARATGNGAIIATIETLWDWRNRSPLARNILA 176 Query: 186 H-----YEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLK 224 EP + EHR +++A++ARD A+ AM+ HL+ Sbjct: 177 RARGMGLEPR------IAEHRRVVDALKARDPAAARQAMRDHLE 214 >CC0986 Non COG Length = 253 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 15/221 (6%) Query: 8 DSRRLYLQ----IADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEG 63 ++++LY Q IAD +R ++PG RLP ER LAE VSRP++REA++ALE+ G Sbjct: 7 ETKKLYQQVANAIADAIRDGTHKPG----QRLPSERDLAEDFKVSRPTVREAMIALEIRG 62 Query: 64 RVEIRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRD 123 VE R GSGVY+T A P E PAP+ ++G ++ AR + EG + AL A + Sbjct: 63 LVEARHGSGVYVTDAPRP---EAPAPELDIG--AFELTEARRLIEGEVAALAAATITDSE 117 Query: 124 IKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDER-QDPISAK 182 + L AI D M E DR FH+ IA+ + N LV V L+D R + P+ Sbjct: 118 LTELAAIMDEMVAENDNNVRGERADRRFHVTIAQASRNSALVTVVENLWDLRYKSPLCRA 177 Query: 183 LLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHL 223 +L+ + + +H+EIL A++ R+ A+ AM+ HL Sbjct: 178 MLERAR-QVGVRPLIDDHQEILLALKERNPAGARNAMREHL 217 >YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis Length = 266 Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 1/215 (0%) Query: 11 RLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMG 70 RLY ++ +LR + ++ RLPPER +AE VSR +REAL+ LELE VE+R G Sbjct: 21 RLYQEVGSQLREAIVSGRYSVGDRLPPERDIAENFSVSRSVVREALIMLELEKLVEVRKG 80 Query: 71 SGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAI 130 SGVY+ E A + G +++ AR + E + A A A DI +R Sbjct: 81 SGVYVVNVPTMSLNGESATSIDSGYGPFELLQARQLLESEVAAFAAMQATKADIIKMRNA 140 Query: 131 YDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDHYEPE 190 + + AG + D FH +A+ T N VL VA+ + R+ + + + Sbjct: 141 IEQGKAALTAGAIDESADELFHCLLAQSTQNSVLANMVAQTWQVRKSSAMWQGAHSHTAD 200 Query: 191 DSW-LTALHEHREILEAIEARDAIQAQAAMQRHLK 224 S+ L +H++IL+A+ RD+ A+ AM +HL+ Sbjct: 201 FSYRWQWLDDHQKILQAVLRRDSKAAKQAMWQHLE 235 >HI0054 [K] COG2186 Transcriptional regulators Hin Haemophilus influenzae Length = 266 Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 117/216 (54%), Gaps = 4/216 (1%) Query: 10 RRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRM 69 R Y +I L+ + Q ++ +LP ER ++E+ GVSR +REA+V LE+E VE++ Sbjct: 23 NRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKK 82 Query: 70 GSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRA 129 GSGVY+ + P E + ++G +++ AR + E +I A A +DI L+ Sbjct: 83 GSGVYVVR-TPESIHMEHSDLPDVGP--FELLQARQLLESSIAEFAALQATKKDILNLKQ 139 Query: 130 IYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDER-QDPISAKLLDHYE 188 I + + Q + D+DFH+ +A +T NDVLV+ +L+ R + A+L Sbjct: 140 ILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQYRFNSAMWAQLHSRIL 199 Query: 189 PEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLK 224 D + +H+ IL AI+ ++A +A+ AM +HL+ Sbjct: 200 QNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLE 235 >uxuR [K] COG2186 Transcriptional regulators Eco Escherichia coli K12 Length = 257 Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 7 TDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVE 66 T ++R Y ++ +R ++ + + RLPPER +AE L V+R +REAL+ LE++G VE Sbjct: 5 TSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVE 64 Query: 67 IRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLS--DIMGARAIFEGAIVALVAPLAKPRDI 124 +R G+G+Y+ + G Q +PD + N +++ AR + E I A A DI Sbjct: 65 VRRGAGIYVLDNS--GSQNTDSPDANVCNDAGPFELLQARQLLESNIAEFAALQATREDI 122 Query: 125 KALRAIYDTMERECQAGQSPAAT---DRDFHIRIARMTGNDVLVQTVARLYDERQ-DPIS 180 +R ERE A +P ++ D FH+ IA T N +LV+ + + R+ +P+ Sbjct: 123 VKMRQALQLEEREL-ASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMW 181 Query: 181 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTM 231 +L H + L +H++IL A+ +DA A+ AM +HL+ +R + Sbjct: 182 IQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLL 232 >ECs5283 [K] COG2186 Transcriptional regulators Ecs Escherichia coli O157:H7 Length = 257 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 7 TDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVE 66 T ++R Y ++ +R ++ + + RLPPER +AE L V+R +REAL+ LE++G VE Sbjct: 5 TSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVE 64 Query: 67 IRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLS--DIMGARAIFEGAIVALVAPLAKPRDI 124 +R G+G+Y+ ++ G +PD + N +++ AR + E I A A DI Sbjct: 65 VRRGAGIYVLDSS--GSHNTDSPDANVCNDAGPFELLQARQLLESNIAEFAALQATREDI 122 Query: 125 KALRAIYDTMERECQAGQSPAAT---DRDFHIRIARMTGNDVLVQTVARLYDERQ-DPIS 180 +R ERE A +P ++ D FH+ IA T N +LV+ + + R+ +P+ Sbjct: 123 VKMRQALQLEEREL-ASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMW 181 Query: 181 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTM 231 +L H + L +H++IL A+ +DA A+ AM +HL+ +R + Sbjct: 182 IQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLL 232 >ZuxuR [K] COG2186 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 257 Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 7 TDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVE 66 T ++R Y + +R ++ + + RLPPER +AE L V+R +REAL+ LE++G VE Sbjct: 5 TSAQRPYQXVGAXIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVE 64 Query: 67 IRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLS--DIMGARAIFEGAIVALVAPLAKPRDI 124 +R G+G+Y+ ++ G +PD + N +++ AR + E I A A DI Sbjct: 65 VRRGAGIYVLDSS--GSHNTDSPDANVCNDAGPFELLQARQLLESNIAEFAALQATREDI 122 Query: 125 KALRAIYDTMERECQAGQSPAAT---DRDFHIRIARMTGNDVLVQTVARLYDERQ-DPIS 180 +R ERE A +P ++ D FH+ IA T N +LV+ + + R+ +P+ Sbjct: 123 VKMRQALQLEEREL-ASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMW 181 Query: 181 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTM 231 +L H + L +H++IL A+ +DA A+ AM +HL+ +R + Sbjct: 182 IQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENVKQRLL 232