BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0033.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2142 [G] COG0395 ABC-type sugar transport system, permease co... 407 e-113 PA2340 [G] COG0395 ABC-type sugar transport system, permease com... 335 5e-92 SMc01498 [G] COG0395 ABC-type sugar transport system, permease c... 333 3e-91 AGl835 [G] COG0395 ABC-type sugar transport system, permease com... 317 1e-86 mll4924 [G] COG0395 ABC-type sugar transport system, permease co... 315 6e-86 AGl3281 [G] COG0395 ABC-type sugar transport system, permease co... 296 4e-80 YPO1895 [G] COG0395 ABC-type sugar transport system, permease co... 170 2e-42 mll5300 [G] COG0395 ABC-type sugar transport system, permease co... 157 2e-38 BMEI1714 [G] COG0395 ABC-type sugar transport system, permease c... 146 4e-35 TM0279 [G] COG0395 ABC-type sugar transport system, permease com... 143 4e-34 >RSc2142 [G] COG0395 ABC-type sugar transport system, permease component Rso Ralstonia solanacearum Length = 286 Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/260 (75%), Positives = 232/260 (89%) Query: 2 AVLGWACAIVLFFPIFWVAVTAFKTESQAYTPSLVFLPTLETFREVFSRSHYLGYVQNSL 61 VL W A+ LFFPIFW+A+TAFKTE QAY SL F+PTL++FREVF+RS+Y + NS+ Sbjct: 27 GVLAWLIALALFFPIFWMAITAFKTEQQAYEASLFFVPTLDSFREVFARSNYFAFAWNSV 86 Query: 62 IVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGL 121 ++S G T++ L LAVPAAY+MAFFP RTQK+LLWMLSTKMMP+VGVL+PIYL+ KN GL Sbjct: 87 LISAGVTVICLALAVPAAYAMAFFPNRRTQKVLLWMLSTKMMPSVGVLVPIYLLWKNAGL 146 Query: 122 LDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPG 181 LDTV+GL I+Y LINLPIAVWMAFTYFN++PK+ILE+ RIDGA+ WQE++YLL+P A+PG Sbjct: 147 LDTVSGLVIVYALINLPIAVWMAFTYFNEIPKDILESGRIDGASTWQEIVYLLMPMALPG 206 Query: 182 LASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIM 241 LASTALLLVILSWNEAFWS+NL+S NAAPLTVFIASYS+PEGLFWAKLSAASLLA+API+ Sbjct: 207 LASTALLLVILSWNEAFWSINLSSSNAAPLTVFIASYSSPEGLFWAKLSAASLLAVAPIL 266 Query: 242 ALGWLAQKQLVRGLTFGAVK 261 +GWL+QKQLVRGLTFGAVK Sbjct: 267 VVGWLSQKQLVRGLTFGAVK 286 >PA2340 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 277 Score = 335 bits (859), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 166/263 (63%), Positives = 204/263 (77%), Gaps = 2/263 (0%) Query: 1 VAVLGWACAIVLFFPIFWVAVTAFKTESQAYT--PSLVFLPTLETFREVFSRSHYLGYVQ 58 + +L W A++LFFPIFW+ +T+FK+E A+ P +F PTLE + + RS Y Y Sbjct: 15 LGLLCWGIALLLFFPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAYAW 74 Query: 59 NSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKN 118 NSL++S +TLL +L+AVPAAYSMAFF T T++ LLWMLSTKM+P VGVL+PIYL+AK Sbjct: 75 NSLLISSSATLLCMLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQ 134 Query: 119 TGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTA 178 GLLD+ L I+YTLINLPI VWM +TYF D+P +ILEAAR+DGA WQE++ +LLP A Sbjct: 135 FGLLDSRLALIIVYTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIA 194 Query: 179 MPGLASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIA 238 GLAST LL +IL WNEAFWSLNLTS AAPLT +ASYS+PEGLFWAKLSA S LA A Sbjct: 195 RGGLASTLLLSLILCWNEAFWSLNLTSSAAAPLTALVASYSSPEGLFWAKLSAVSTLACA 254 Query: 239 PIMALGWLAQKQLVRGLTFGAVK 261 PI+ GW++QKQLVRGL+FGAVK Sbjct: 255 PILVFGWISQKQLVRGLSFGAVK 277 >SMc01498 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 276 Score = 333 bits (853), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 167/262 (63%), Positives = 211/262 (80%), Gaps = 3/262 (1%) Query: 3 VLGWACAIVLFFPIFWVAVTAFKTESQAYTPSLVFLP---TLETFREVFSRSHYLGYVQN 59 V+ W I++FFPI W +T+FKTE+QA VFL T E + EV SRS YL + N Sbjct: 15 VVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYSEVQSRSDYLKHFMN 74 Query: 60 SLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNT 119 S++VS GSTLL LL+A+P+A++MAF PT RT+ +L+WMLSTKMMP VGVL+P+YL+ +N Sbjct: 75 SVVVSFGSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPPVGVLVPMYLIFRNW 134 Query: 120 GLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAM 179 GLLDT TGL I+ TLINLPI +WM +TYF ++P EILEAAR+DGA+ +E+IY+L P A+ Sbjct: 135 GLLDTRTGLVIVLTLINLPIIIWMLYTYFKEIPGEILEAARMDGASLTKEIIYVLTPMAI 194 Query: 180 PGLASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAP 239 PG+AST LL +IL+WNEAFW+LNL++ AAPLT FIASYS+PEGLF+AKLSAAS +AIAP Sbjct: 195 PGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLFYAKLSAASTMAIAP 254 Query: 240 IMALGWLAQKQLVRGLTFGAVK 261 I+ LGW +QKQLVRGLTFGAVK Sbjct: 255 ILILGWFSQKQLVRGLTFGAVK 276 >AGl835 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 274 Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/260 (59%), Positives = 208/260 (80%), Gaps = 1/260 (0%) Query: 3 VLGWACAIVLFFPIFWVAVTAFKTESQAYTP-SLVFLPTLETFREVFSRSHYLGYVQNSL 61 + WA A++LFFPI + +T+ KTE +A SL+ TLE + V ++ Y NS+ Sbjct: 15 IAAWAVALLLFFPILYAFLTSIKTEPEAIAGFSLIPSGTLENYITVQTQRDYFKPFMNSV 74 Query: 62 IVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGL 121 ++SLGST+++L++A+PAA++MAF PT RT+ +L+WMLSTKMMP V VL+PIYL+ +N GL Sbjct: 75 VLSLGSTIIALMIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPGVAVLVPIYLIFRNAGL 134 Query: 122 LDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPG 181 LDT GLT++ T INLPI VWM +TYF ++P EILEAAR+DGA+ W E++++L P A+PG Sbjct: 135 LDTRIGLTVMLTFINLPIVVWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPG 194 Query: 182 LASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIM 241 +AST LL VIL+WNE+FW++ LT+ NAAPLT FIAS+S+P+GLFWAKLSAAS++AIAPI+ Sbjct: 195 IASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPIL 254 Query: 242 ALGWLAQKQLVRGLTFGAVK 261 +GW +QKQLVRGLTFGAVK Sbjct: 255 VIGWFSQKQLVRGLTFGAVK 274 >mll4924 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 274 Score = 315 bits (807), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 154/260 (59%), Positives = 208/260 (80%), Gaps = 1/260 (0%) Query: 3 VLGWACAIVLFFPIFWVAVTAFKTESQAYTP-SLVFLPTLETFREVFSRSHYLGYVQNSL 61 V W A+++FFPI + +T+FK+E +A +L+ T E++ EV ++S Y + NS+ Sbjct: 15 VAAWIVALLIFFPILYTIITSFKSEQEAIQGFNLIPSGTFESYSEVQAQSGYFKFFFNSV 74 Query: 62 IVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGL 121 ++S+GST+L+LL+A+PAA+SMAF PT RT+ +L+WMLSTKMMPAV VL PIYL+ ++ GL Sbjct: 75 LLSVGSTILALLVAIPAAWSMAFSPTKRTKDILMWMLSTKMMPAVAVLFPIYLIFRDFGL 134 Query: 122 LDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPG 181 LD+ GL ++ LINLPI VWM +TYF ++P EILEAAR+DGA+ W E+IY+L P A+PG Sbjct: 135 LDSRIGLMVMLMLINLPIVVWMLYTYFREIPGEILEAARMDGASLWNEIIYVLTPMAVPG 194 Query: 182 LASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIM 241 +AST LL +IL+WNEAFW++ LT+ AAPLT FI+S+S+P+GLFWAKLSAAS LAIAPI+ Sbjct: 195 IASTMLLNIILAWNEAFWTIRLTTTEAAPLTAFISSFSSPQGLFWAKLSAASTLAIAPIL 254 Query: 242 ALGWLAQKQLVRGLTFGAVK 261 +GW +QKQLVRGLTFGAVK Sbjct: 255 IMGWFSQKQLVRGLTFGAVK 274 >AGl3281 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 274 Score = 296 bits (757), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 154/261 (59%), Positives = 209/261 (80%), Gaps = 1/261 (0%) Query: 2 AVLGWACAIVLFFPIFWVAVTAFKTESQAYTP-SLVFLPTLETFREVFSRSHYLGYVQNS 60 ++ WA A++LFFPI + +T+ KTE +A SL+ TLE + V ++ Y NS Sbjct: 14 SIAAWAVALLLFFPILYAFLTSIKTEPEAIAGFSLLPSGTLENYITVQTQRDYFKPFMNS 73 Query: 61 LIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTG 120 +++SLGST+++L++A+PAA++MAF PT RT+ +L+WMLSTKMMP V VL+PIYL+ +N G Sbjct: 74 VVLSLGSTIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPGVAVLVPIYLIFRNAG 133 Query: 121 LLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMP 180 LLDT GLT++ T INLPI VWM +TYF ++P EILEAAR+DGA+ W E++++L P A+P Sbjct: 134 LLDTRIGLTVMLTFINLPIVVWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVP 193 Query: 181 GLASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPI 240 G+AST LL VIL+WNE+FW++ LT+ NAAPLT FIAS+S+P+GLFWAKLSAAS++AIAPI Sbjct: 194 GIASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPI 253 Query: 241 MALGWLAQKQLVRGLTFGAVK 261 + +GW +QKQLVRGLTFGAVK Sbjct: 254 LVIGWFSQKQLVRGLTFGAVK 274 >YPO1895 [G] COG0395 ABC-type sugar transport system, permease component Ype Yersinia pestis Length = 275 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 9/258 (3%) Query: 10 IVLFF--PIFWVAVTAFKTESQAYT--PSLVFLPTLETFREVFSRSHYLGYVQNSLIVSL 65 I++FF PI+W+ +FKT A+ P L F P L+ +R+V ++ NSL++SL Sbjct: 21 ILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNYRQVLGNGDFIRAFGNSLLISL 80 Query: 66 GSTLLSLLLAVPAAYSMAFF--PTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGLLD 123 ST L L+L AY + FF GR ++ +++S + P + ++IP+Y + G+ D Sbjct: 81 VSTFLCLILGALFAYGLVFFIERKGRAKQ---FIMSLRYAPVIMLVIPVYYLITKLGMTD 137 Query: 124 TVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPGLA 183 L ++YT+ N+P + M T+F D+P EI EAAR+DGA+ W+ + ++LP A GLA Sbjct: 138 NYLVLILVYTVANVPFTILMVTTFFEDIPPEIREAARVDGASEWRVFLSVMLPLARTGLA 197 Query: 184 STALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIMAL 243 ++ +L + WNE L L+ + L V I S+ +G W L+AA L + P++ L Sbjct: 198 ASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEWGPLTAAGTLVMLPMLVL 257 Query: 244 GWLAQKQLVRGLTFGAVK 261 G L QK LVRGLT G VK Sbjct: 258 GLLVQKHLVRGLTMGGVK 275 >mll5300 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 316 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 35/282 (12%) Query: 15 PIFWVAVTAFKT--ESQAYTPSLVFLPTLETFREVFSR---------------------- 50 P+ W+ T+FKT +S AY P +VF P++E + +F+ Sbjct: 34 PLLWIFATSFKTPPDSIAYPPKIVFQPSIEGYCNLFTTRTRQTPEYINSLGPATGFCDET 93 Query: 51 -----------SHYLGYVQNSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLS 99 S++L NSLI++ GST ++ L +AY + F LL ++LS Sbjct: 94 VRKRNMVIAGPSNFLPRFLNSLIIAFGSTFCAVFLGTLSAYGFSRFKVPLADDLLFFILS 153 Query: 100 TKMMPAVGVLIPIYLMAKNTGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAA 159 T+ MP + V IPIYLM + GL DT G+ ++YT +N+ +AVW+ + +++P+E EAA Sbjct: 154 TRFMPPIAVAIPIYLMYRELGLSDTALGMILLYTAVNVSLAVWLLKGFIDEIPREYEEAA 213 Query: 160 RIDGANAWQEMIYLLLPTAMPGLASTALLLVILSWNEAFWSLNLTSVNAAPLTVFIASYS 219 IDG Q +LP A G+A+TA+ +I +WNE ++ LTS A FI + Sbjct: 214 MIDGYTRLQAFWRTVLPQATTGIAATAIFCLIFAWNEYAFAALLTSGTAQTAPPFIPTII 273 Query: 220 NPEGLFWAKLSAASLLAIAPIMALGWLAQKQLVRGLTFGAVK 261 G W ++A + + + PI+ L +KQL+RG+TFGAV+ Sbjct: 274 GEGGQDWPAVAAGTTIFLVPILVFTILLRKQLLRGITFGAVR 315 >BMEI1714 [G] COG0395 ABC-type sugar transport system, permease component Bme Brucella melitensis Length = 294 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 149/262 (56%), Gaps = 11/262 (4%) Query: 10 IVLFFPIFWVAVTAFKTESQAYTPSLVFLP---TLETFREVFSRSHYLG-----YVQNSL 61 +V+ P FW+ +++ + + V++P +L+ +R +FS + G Y +NS+ Sbjct: 33 LVICLPGFWIVLSSLRPPVEIMAKPPVWIPQDISLDAYRTMFSGAGAGGVPVWDYFRNSI 92 Query: 62 IVSLGSTLLSLLLAVPAAYSMAFFP-TGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTG 120 IVS+ ST++SL++ + Y+ A F G++ L +ML T+ +P + + +P++++ G Sbjct: 93 IVSVTSTVVSLIIGMSGGYAFARFRFRGKSATFLGFML-TRSVPGIALSLPLFMVYSRIG 151 Query: 121 LLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMP 180 ++DT GL + Y +N+P W+ +F VPK++ EAA+IDG WQ + P A P Sbjct: 152 IIDTHFGLILTYVALNIPFTTWLIDGFFRQVPKDLAEAAQIDGCTRWQAFWQVEFPLAGP 211 Query: 181 GLASTALLLVILSWNEAFWSLNLT-SVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAP 239 G+AS + + WNE + LT SVN+ L V + Y+ + W + A +++ I P Sbjct: 212 GIASAGIFAFLTCWNEYALASQLTRSVNSKTLPVGLLDYTAEFTIDWRGMCALAVVMIVP 271 Query: 240 IMALGWLAQKQLVRGLTFGAVK 261 +AL ++ QK LV GLTFGAVK Sbjct: 272 ALALTFVIQKHLVSGLTFGAVK 293 >TM0279 [G] COG0395 ABC-type sugar transport system, permease component Tma Thermotoga maritima Length = 281 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 148/263 (56%), Gaps = 15/263 (5%) Query: 8 CAIVLFFPIFWVAVTAFKTESQAYTPSLVFLPTLETF--------REVF-----SRSHYL 54 C I FP++W+ +TAFK + +T F PT T EVF S + Sbjct: 17 CLIFFLFPVYWLVITAFKPSDEWFTMPPRFFPTKPTLANFFGAKETEVFGGTTGSIENIF 76 Query: 55 GYVQNSLIVSLGSTLLSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYL 114 Y++NS++V + L+ +++ AAY++A + G L W++S +M+P + +P+Y+ Sbjct: 77 PYLRNSIVVGVSVALIGTVISALAAYAIARYRVG-GPFLAEWIISIRMLPPIVSAVPLYV 135 Query: 115 MAKNTGLLDTVTGLTIIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLL 174 + L++T L + + +I +P+ VW+ ++F ++P+EI EAA +DGA +Q Y++ Sbjct: 136 IFTKLRLINTWWALILSHLVIVVPLGVWLLISFFREIPREIDEAAYVDGATPFQAFFYVV 195 Query: 175 LPTAMPGLASTALLLVILSWNEAFWSLNLTS-VNAAPLTVFIASYSNPEGLFWAKLSAAS 233 LP + PGLA+ A+L +I SW E +L LT+ A L +F+ Y + W LSAA Sbjct: 196 LPLSAPGLAAVAVLSLIQSWGEFLLALVLTNDARAQTLPIFLGRYITGWRVAWGPLSAAG 255 Query: 234 LLAIAPIMALGWLAQKQLVRGLT 256 ++ + P++ +AQ+ L+RGLT Sbjct: 256 IVTMLPVVVFALVAQRYLIRGLT 278