BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0011.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0676 [L] COG0816 Predicted endonuclease involved in recombina... 125 1e-28 NMA1551 [L] COG0816 Predicted endonuclease involved in recombina... 115 1e-25 NMB1337 [L] COG0816 Predicted endonuclease involved in recombina... 114 2e-25 ZyqgF [L] COG0816 Predicted endonuclease involved in recombinati... 111 2e-24 ECs3825 [L] COG0816 Predicted endonuclease involved in recombina... 111 2e-24 yqgF [L] COG0816 Predicted endonuclease involved in recombinatio... 110 4e-24 STM3097 [L] COG0816 Predicted endonuclease involved in recombina... 108 1e-23 YPO0937 [L] COG0816 Predicted endonuclease involved in recombina... 103 4e-22 PM1870 [L] COG0816 Predicted endonuclease involved in recombinat... 100 7e-21 HI0305 [L] COG0816 Predicted endonuclease involved in recombinat... 94 3e-19 >RSc0676 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Rso Ralstonia solanacearum Length = 144 Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 2/128 (1%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFD+G KRIGVA+GN + A+ L VI + + +F I RL+ WQP VVG+P+ Sbjct: 17 TLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPV 76 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQH--QRGEQIDDQAAAIILQ 291 HP+G + M +RF NQLHGRYG+ V VDERYSS Q + +D +AA IILQ Sbjct: 77 HPEGEDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAGATDDVLDAEAARIILQ 136 Query: 292 QYFDDAHS 299 Q+FD++H+ Sbjct: 137 QFFDESHA 144 >NMA1551 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) NmA Neisseria meningitidis Z2491 Length = 151 Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 81/132 (61%), Gaps = 10/132 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T LAFDFG RIGVA G+ L + PLA ++ +ND KFAAIA+L+QEWQP VVGLP+ Sbjct: 8 TALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVGLPV 67 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSA----------VIQHQRGEQIDD 283 H DG +HEM+ R+F +L+GR+ + V VDER SS V +R +D Sbjct: 68 HTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKSVLDQ 127 Query: 284 QAAAIILQQYFD 295 AA IL +F+ Sbjct: 128 VAAQAILHGFFE 139 >NMB1337 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Nme Neisseria meningitidis MC58 Length = 151 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/132 (46%), Positives = 81/132 (61%), Gaps = 10/132 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T LAFDFG RIGVA G+ L + PL+ ++ +ND KFAAIA+L+QEWQP VVGLP+ Sbjct: 8 TALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVGLPV 67 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSA----------VIQHQRGEQIDD 283 H DG +HEM+ R+F +L+GR+ + V VDER SS V +R +D Sbjct: 68 HTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKSVLDQ 127 Query: 284 QAAAIILQQYFD 295 AA IL +F+ Sbjct: 128 VAAQAILHGFFE 139 >ZyqgF [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) EcZ Escherichia coli O157:H7 EDL933 Length = 138 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 10/135 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG K IGVAVG A+PL I + I RL++EWQP +VGLPL Sbjct: 4 TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQ----------IDD 283 + DG E ++ R R+FAN++HGR+GVEV L DER S+ + EQ ID Sbjct: 64 NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDS 123 Query: 284 QAAAIILQQYFDDAH 298 +A IIL+ YF+ + Sbjct: 124 ASAVIILESYFEQGY 138 >ECs3825 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Ecs Escherichia coli O157:H7 Length = 138 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 10/135 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG K IGVAVG A+PL I + I RL++EWQP +VGLPL Sbjct: 4 TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQ----------IDD 283 + DG E ++ R R+FAN++HGR+GVEV L DER S+ + EQ ID Sbjct: 64 NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDS 123 Query: 284 QAAAIILQQYFDDAH 298 +A IIL+ YF+ + Sbjct: 124 ASAVIILESYFEQGY 138 >yqgF [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Eco Escherichia coli K12 Length = 138 Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 10/135 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG K IGVAVG A+PL I + I RL++EWQP +VGLPL Sbjct: 4 TLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQ----------IDD 283 + DG E ++ R R+FAN++HGR+GVEV L DER S+ + EQ +D Sbjct: 64 NMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123 Query: 284 QAAAIILQQYFDDAH 298 +A IIL+ YF+ + Sbjct: 124 ASAVIILESYFEQGY 138 >STM3097 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Sty Salmonella typhimurium LT2 Length = 138 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 10/135 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG K IGVA+G A+PL I + I RL++EWQP +VGLPL Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGE----------QIDD 283 + DG E ++ R R+FAN++HGR+GV V L DER S+ + E ++D Sbjct: 64 NMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDS 123 Query: 284 QAAAIILQQYFDDAH 298 +A IIL+ YF+ + Sbjct: 124 ASAVIILESYFEQGY 138 >YPO0937 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Ype Yersinia pestis Length = 140 Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 10/133 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 TI+AFDFG K IGVA+G A+ L + + +L++EWQP VVGLPL Sbjct: 5 TIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGLPL 64 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGE----------QIDD 283 + DG E ++ R RRFAN+LHGR+GV+V L DER S+ + + +D Sbjct: 65 NMDGTEQPLTARARRFANRLHGRFGVQVALQDERLSTVEARANLFDRGGYRALDKGSVDA 124 Query: 284 QAAAIILQQYFDD 296 +A IIL+ +FD+ Sbjct: 125 ASAVIILESWFDE 137 >PM1870 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Pmu Pasteurella multocida Length = 140 Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 10/133 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG K IG AVG AQ L + AI + + EWQP R VVGLPL Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQ---RG-------EQIDD 283 + DG E +++VR R+FA++LHGR+GV V L DER ++ + + RG ++D Sbjct: 64 NMDGTEQDLTVRARKFAHRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSKVDG 123 Query: 284 QAAAIILQQYFDD 296 +A +IL+ +F++ Sbjct: 124 ISACLILESWFEN 136 >HI0305 [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) Hin Haemophilus influenzae Length = 139 Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 10/135 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T LAFDFG K IG A+G AQ L + AI + ++EW+P +VGLPL Sbjct: 4 TALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPL 63 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGE----------QIDD 283 + DG E ++++R R+FAN+L GR+GV V L DER ++ + + E +ID Sbjct: 64 NMDGTEQDLTLRARKFANRLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDG 123 Query: 284 QAAAIILQQYFDDAH 298 +A +IL+ +F+ A Sbjct: 124 VSACLILESWFEYAE 138