BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0054.p         (106 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia sol...   130   8e-31
PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas ae...   113   1e-25
CC3163 Non COG                                                        106   2e-23

>RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 105

 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 73/104 (70%)

Query: 3   ATLPERHYASFSEFYPIYLGEHAHRVNRQLHFLGSTLALLCLLLLLLTHQWWWLGVALLC 62
           AT     + SF+EFYP YLGEH +R  R+LHF GSTLAL+CL+ L+ T   WWL  A + 
Sbjct: 2   ATTDAHRFGSFAEFYPYYLGEHRNRTCRRLHFAGSTLALVCLIQLVFTGSLWWLLAAAVS 61

Query: 63  GYGFAWAGHFLVEKNQPATLRHPLYSFMGDWVMYWQMLTGQVSF 106
           GY FAW GHF  EKN+PAT RHP+YS MGDWVMY  +  G++ F
Sbjct: 62  GYAFAWVGHFAFEKNRPATFRHPIYSLMGDWVMYRDIWIGKIPF 105


>PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 105

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 1   MSATLPERHYASFSEFYPIYLGEHAHRVNRQLHFLGSTLALLCLLLLLLTHQWWWLGVAL 60
           MS+   ER + SF+EFYP YL EH++ V R+LH++GS L L  L   + + QW WL    
Sbjct: 1   MSSPDDER-FHSFAEFYPYYLQEHSNAVCRRLHYVGSLLVLAVLFHAVASQQWLWLLALP 59

Query: 61  LCGYGFAWAGHFLVEKNQPATLRHPLYSFMGDWVMYWQMLTGQVSF 106
           L GYGFAW GHF+ EKN+PAT ++PL+SFMGDWVM     TG++ F
Sbjct: 60  LVGYGFAWVGHFVFEKNRPATFKYPLWSFMGDWVMLKDAFTGRIRF 105


>CC3163 Non COG
          Length = 208

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 9   HYASFSEFYPIYLGEHAHRVNRQLHFLGSTLALLCLLLLLLTHQWWWLGVALLCGYGFAW 68
            Y SF+ FYP Y+ EHA+ V+R+LH +G++L ++CL+L +    W +   A + GYGFAW
Sbjct: 112 RYKSFAAFYPFYMTEHANPVSRRLHVVGTSLVIVCLVLGVF-RDWRFFIAAPVIGYGFAW 170

Query: 69  AGHFLVEKNQPATLRHPLYSFMGDWVMYWQMLTGQVSF 106
            GHF+ EKN+PAT ++P+YS MGD+ ++++ +TG+  F
Sbjct: 171 IGHFVFEKNRPATFKYPVYSLMGDFRLWFETVTGRRKF 208