BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0051.p         (130 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1557 Non COG                                                       129   2e-30
NMA0801 [S] COG3308 Predicted membrane protein NmA Neisseria men...   101   5e-22
NMB0597 [S] COG3308 Predicted membrane protein Nme Neisseria men...   100   9e-22

>RSc1557 Non COG
          Length = 129

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 83/119 (69%), Gaps = 1/119 (0%)

Query: 5   ARYFHLGACSSLIALILLGLAWELVLAPLRPGGSWMVLKVLPLLLPLRGVLKRDVYTLQW 64
           +R  H  +  SLIALI L +AWEL LAPLRPGGSW+ LK L L  PL GVL+R+ YT+QW
Sbjct: 10  SRILHGLSAGSLIALIALCMAWELWLAPLRPGGSWLALKALLLTWPLPGVLRRNRYTMQW 69

Query: 65  SSMLILVYLAEGLVRATSDAVHLSMQLGWVEVALSLLYFLCALLYLHPFKKAAKEIARQ 123
           +SM IL++  EG+VRATSD    S  L W EV LSL++F   + YL PFK+AAK  AR 
Sbjct: 70  ASMFILLFFTEGIVRATSDP-GASRALAWAEVVLSLVFFFATIFYLRPFKRAAKARARH 127


>NMA0801 [S] COG3308 Predicted membrane protein NmA Neisseria meningitidis
           Z2491
          Length = 117

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 1   MNSRARYFHLGACSSLIALILLGLAWELVLAPLRPGGSWMVLKVLPLLLPLRGVLKRDVY 60
           MN +  Y  L A  SLIALI+L L+WEL +APLRPGGSW+ LK LPL LPL G+LK+ +Y
Sbjct: 1   MNKQTAY--LLASFSLIALIILSLSWELWIAPLRPGGSWLALKALPLCLPLSGILKKKIY 58

Query: 61  TLQWSSMLILVYLAEGLVRATSDAVHLSMQLGWVEVALSLLYFLCALLYLHPFKKA 116
           T Q+SSML+L+Y AE ++R   DA         +    S+++F+  L ++  +K+ 
Sbjct: 59  TYQYSSMLVLIYFAEAVMR-LFDAYPAEQICAALSAVFSIIFFISCLSFVKQYKET 113


>NMB0597 [S] COG3308 Predicted membrane protein Nme Neisseria meningitidis
           MC58
          Length = 117

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 1   MNSRARYFHLGACSSLIALILLGLAWELVLAPLRPGGSWMVLKVLPLLLPLRGVLKRDVY 60
           MN +  Y  L A  SLIALI+L L+WEL +APLRPGGSW+ LK LPL LPL G+LK+ +Y
Sbjct: 1   MNRQTAY--LLASFSLIALIILSLSWELWIAPLRPGGSWLALKALPLCLPLSGILKKKIY 58

Query: 61  TLQWSSMLILVYLAEGLVRATSDAVHLSMQLGWVEVALSLLYFLCALLYLHPFKKA 116
           T Q+SSML+L+Y AE ++R   DA         +    S+++F+  L ++  +K+ 
Sbjct: 59  TYQYSSMLVLIYFAEAVMR-LFDAYPAEQICAALSAVFSIIFFISCLSFVKQYKET 113