BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0041.p         (463 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3848 [R] COG2358 TRAP-type uncharacterized transport system, p...   241   3e-63

>PA3848 [R] COG2358 TRAP-type uncharacterized transport system, periplasmic
           component Pae Pseudomonas aeruginosa
          Length = 451

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 246/437 (56%), Gaps = 16/437 (3%)

Query: 27  RDLAVSFGPIILLILVGAWLV---IWLIRPAPPSSITIAAGPKDSNFWRVAERYKTILAR 83
           +DLA+     + LI V A LV    + + P PP S T+A G +   +   A + +  L  
Sbjct: 9   KDLAILIRANLWLIPVIAALVAAVFYFVAPPPPMSATMATGAEGGGYAVFAGKLREKLKE 68

Query: 84  DGIKLDIVETGGSLDNLKRLADSDQDIDVGFVQGGLAGAVPADAMGSLVSLGSISYVPVS 143
            G +L +V + GS DNL+RL  + + +D+  VQ G    + A     L +LG++   P+ 
Sbjct: 69  QGFELKLVPSAGSRDNLERLLGTGE-VDIALVQSGQERQLEAGQARQLQTLGAVYQEPLW 127

Query: 144 VYYRSASVNAEGKPIPPLRQLSELAGKRIAIGGQGSGSSVLAATLLKANGVEAGGATQLL 203
           +++RS +V+ +        QLS+L   R+AIG  GSG+      +L+AN +  G      
Sbjct: 128 LFHRS-NVHID--------QLSDLLHLRLAIGSDGSGTRAATEAILQANDIAPGHYPITW 178

Query: 204 NI-GGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQAEAYVRRFRYLN 262
              GG+     L +GK+DAAF++G + + A + KL     +RL++F ++ AY  R  +L 
Sbjct: 179 EARGGNAVVDDLLAGKLDAAFIVGPAENPA-IQKLADNDQLRLVNFRRSAAYEARLPFLK 237

Query: 263 TLKMPMGVFDLARNLPARDTQLIAPTAELVAREDLHPALSDLLIEAAHEVHGKANVMQKA 322
            +++  G+ +L RN+P R+   ++P A LV  E  HPAL  L++EAA EV    +++ K 
Sbjct: 238 RVEVGEGLLNLPRNVPERNISTLSPVATLVINERFHPALIPLVLEAAREVMKDGSLLDKP 297

Query: 323 GEFPAPLEHEYRISDDAARYYKSGKTFFYRTLPFWLASLLDRAVVIVLPVILLLIPGIRL 382
           G FP+      R+ +DA RYYKSG     R LPF +ASL DR +++++P I +LIP ++ 
Sbjct: 298 GAFPSAEPRTLRLHEDAERYYKSGLPLLQRYLPFRIASLADRYIILLIPFIAILIPLMKS 357

Query: 383 VPMLYGWRVRSRIYRWYGELIALERGISRDSPQEQ-ADILKRLDEIEMAVNRMKMPLAFA 441
           +  LY WR+R+RIYRWY  +  ++R +   +  EQ    ++RL+++E  +N +++PL++ 
Sbjct: 358 IGPLYRWRIRARIYRWYRYIRDIDRKLDSGTDAEQLRSEIERLEKLESELNTVEVPLSYY 417

Query: 442 DQFYVLREHIGFVRARL 458
            + Y L  H+ FV  RL
Sbjct: 418 HELYELHLHLNFVIKRL 434