BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0014.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20659 [G] COG1175 ABC-type sugar transport systems, permease ... 432 e-121 AGc4717 [G] COG1175 ABC-type sugar transport systems, permease c... 169 8e-42 SMb21149 [G] COG1175 ABC-type sugar transport systems, permease ... 166 4e-41 SMc01978 [G] COG1175 ABC-type sugar transport systems, permease ... 165 1e-40 BH1245 [G] COG1175 ABC-type sugar transport systems, permease co... 160 3e-39 AGl3272 [G] COG1175 ABC-type sugar transport systems, permease c... 160 4e-39 mlr2245 [G] COG1175 ABC-type sugar transport systems, permease c... 153 5e-37 AGpA678 [G] COG1175 ABC-type sugar transport systems, permease c... 152 6e-37 PM1761 [G] COG1175 ABC-type sugar transport systems, permease co... 149 8e-36 TM0811 [G] COG1175 ABC-type sugar transport systems, permease co... 146 4e-35 >SMb20659 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 310 Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/297 (74%), Positives = 259/297 (87%) Query: 3 SRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAG 62 + + N NVLG LFM PA + L+ FLTYPLGLG+WLGFTDT+IG +G FIG++N+ +LA Sbjct: 14 ASLMQNNNVLGFLFMLPAAVFLICFLTYPLGLGVWLGFTDTRIGRDGVFIGIENYEFLAR 73 Query: 63 DSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSAL 122 DS+ LS++NT+ YT ASILKF+LGLWLA+LLN+N+P K+FFRAIVLLPW+VPT LSAL Sbjct: 74 DSVFWLSVYNTLLYTFVASILKFVLGLWLALLLNENLPFKSFFRAIVLLPWVVPTVLSAL 133 Query: 123 AFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGL 182 AFWW+YD+QFS+ISW+L ++G+ID I+FLGDP NAR S + ANVWRGIPFVAISLLAGL Sbjct: 134 AFWWIYDSQFSIISWSLMQLGIIDGPINFLGDPNNARASVIAANVWRGIPFVAISLLAGL 193 Query: 183 QTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGP 242 QTI SL EAA++DGAT WQ+FR+VTLP+LTPIIAVVMTFSVLFTFTDFQLIYVLT+GGP Sbjct: 194 QTIPASLQEAASLDGATSWQRFRYVTLPMLTPIIAVVMTFSVLFTFTDFQLIYVLTKGGP 253 Query: 243 LNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 +NATHLMATLSFQR IPGG LGEGAA+A MIPFLLAAIMFS+FGLQRR WQQGG Sbjct: 254 VNATHLMATLSFQRGIPGGQLGEGAAIAVAMIPFLLAAIMFSFFGLQRRKWQQGGQD 310 >AGc4717 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 294 Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 156/280 (55%), Gaps = 6/280 (2%) Query: 19 PAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAGDSLAQL--SLFNTVFY 76 PA+ + + + YPL L FTD + +++G N+ + + A + F F+ Sbjct: 17 PALFYITLIVAYPLVDTFILSFTDASLKKVTNWVGFINYEKIFNATFADVITRTFVWTFF 76 Query: 77 TVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQFSVIS 136 +VS +K ++G + A+LLN VP + FR + + PWIVP A+ + W+Y+ QF +IS Sbjct: 77 SVS---IKMIIGTFGAVLLNSAVPGRALFRILTMPPWIVPMAIGIFMWGWMYNGQFGMIS 133 Query: 137 WALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAID 196 L +GL+D + FL A W+T+ +VW G+P V + LLA +Q+I LYEAA D Sbjct: 134 GVLQNLGLVDGPVAFLAYGRTAFWATIVTDVWIGVPMVTLYLLAAIQSIPQDLYEAAWTD 193 Query: 197 GATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQR 256 GA+ +FR +TLPL+ P + + S++ TF F +I++LTRGGP T M +++ Sbjct: 194 GASRSYRFRRITLPLMLPAMITMSVLSLISTFNSFDIIWILTRGGPNGETTTMIIDTYKT 253 Query: 257 AIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQG 296 AI GEGAA A +I L+ F YF + RR Q+ Sbjct: 254 AIGAYKYGEGAARAV-LICIFLSIFTFFYFRITRRFSQEA 292 >SMb21149 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 294 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 150/273 (54%), Gaps = 2/273 (0%) Query: 19 PAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAGDSLAQLSLFNTVFYTV 78 PAV + V + YPL L FTD + ++G N+ + + A++ + T +T Sbjct: 17 PAVFYVTVIVAYPLVDTFVLSFTDASLKKTTKWVGTANYDKIFNATFAEV-ILRTFVWTA 75 Query: 79 SASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQFSVISWA 138 + +K ++G + A++LN VP + FR + + PWIVP A+ + W+Y+ QF +IS Sbjct: 76 FSVTIKMIIGTFGAVMLNAAVPGRALFRVLTMPPWIVPMAIGIFMWGWMYNGQFGMISGT 135 Query: 139 LHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAIDGA 198 L GL+D + FL A W+T+ +VW G+P V + +LA +Q I LYEAA DGA Sbjct: 136 LQNWGLVDGPVAFLAHGSTAFWATIVTDVWIGVPLVTLYMLASMQAIPQDLYEAAWTDGA 195 Query: 199 TPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQRAI 258 + +FR +TLPLL P + + S++ TF F +I++LT+GGP T M +++ AI Sbjct: 196 GRFYRFRRITLPLLVPSMITMSMLSLIATFNSFDIIWILTQGGPNGDTTTMIIDTYRTAI 255 Query: 259 PGGALGEGAALATYMIPFLLAAIMFSYFGLQRR 291 GEGAA A +I L+ +YF + R Sbjct: 256 GSKKYGEGAARAV-LICIFLSIFCIAYFRVTHR 287 >SMc01978 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 311 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/245 (40%), Positives = 146/245 (59%), Gaps = 2/245 (0%) Query: 15 LFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGG--EGSFIGLDNFTYLAGDSLAQLSLFN 72 L+ APA+IL+V + PL LGI F D ++ G F+GLD+F LA D SL N Sbjct: 29 LYTAPALILIVTVMLVPLVLGISYAFRDIQLLNPFSGGFVGLDHFRALAQDQAFFRSLRN 88 Query: 73 TVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQF 132 T+++T ++ L+F GL LA+LL+K + +A+V LPW VP+ L+ L + WL++ Sbjct: 89 TLWWTGASVFLQFAFGLILALLLDKPFHGRAIAQALVFLPWAVPSFLAGLNWAWLFNPVV 148 Query: 133 SVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEA 192 + L +G++ + + L DP A W + AN+W GIPF AI+LLA LQ I LYEA Sbjct: 149 GPLPHWLFALGIMSQPTNILSDPQLAMWGPIVANIWWGIPFFAITLLAALQAIPRDLYEA 208 Query: 193 AAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATL 252 A+IDGA P Q+F +TLP L P IA+ + ++ LI V+T GGP + T ++A+ Sbjct: 209 ASIDGAGPLQRFLSITLPFLAPTIAITILLRTVWISNFADLIIVMTNGGPADRTQIVASY 268 Query: 253 SFQRA 257 F +A Sbjct: 269 IFTQA 273 >BH1245 [G] COG1175 ABC-type sugar transport systems, permease components Bha Bacillus halodurans Length = 445 Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 140/235 (59%), Gaps = 2/235 (0%) Query: 48 EGSFIGLDNFTYLAGDSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRA 107 E +FIG ++ DS ++ NT+F+TV + + +LGL +A+L+N+ + R Sbjct: 193 ESNFIGFSHYVNYVQDSRMWAAMSNTLFFTVVSVAAELVLGLAIALLINRTFKGRGLVRV 252 Query: 108 IVLLPWIVPTALSALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANV 167 VL+PW +PTA++A+ + +LYD QF VI+ ++GLI L A +S +FA+V Sbjct: 253 AVLIPWAIPTAVAAMMWRYLYDGQFGVIAHYFEQLGLISDSSVLLSTGAGAMFSIIFADV 312 Query: 168 WRGIPFVAISLLAGLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFT 227 W+ P++A+ LLAGLQTI SLYEAA +DGA Q F +TLPLL I V + F L Sbjct: 313 WKTTPYMALLLLAGLQTIPNSLYEAAKVDGANRIQTFFKITLPLLKSAILVALLFRTLDA 372 Query: 228 FTDFQLIYVLTRGGPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIM 282 F F LI+VLT GGP N+T ++ +++ G G+AL+ +I FL A++ Sbjct: 373 FRVFDLIFVLTGGGPANSTESISIYAYRTLFSQQNFGAGSALS--VIVFLSVALI 425 >AGl3272 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 337 Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 148/258 (57%), Gaps = 2/258 (0%) Query: 15 LFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGE--GSFIGLDNFTYLAGDSLAQLSLFN 72 L+ AP ++L+V + PL LG+ F D ++ G F+GL + L+ D+ +L N Sbjct: 55 LYSAPVLVLIVAVMLVPLVLGLSYAFRDVQLLNPFPGGFVGLKHLEALSQDAAFYRALKN 114 Query: 73 TVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQF 132 T+++T ++ L+F GL LA+LL+K + +A+V LPW VPT L+ L + WL++ Sbjct: 115 TLWWTGASVFLQFFFGLILALLLDKPFAGRGLAQALVFLPWAVPTFLAGLNWAWLFNPVI 174 Query: 133 SVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEA 192 + + +GL+ + L DP A W + ANVW GIPF AI+LLA LQ I LYEA Sbjct: 175 GPLPHWMVSLGLLSAPNNILADPQLAMWGPIIANVWWGIPFFAITLLAALQAIPRDLYEA 234 Query: 193 AAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATL 252 A IDGA P+Q+F +TLP L P IA+ + ++ LI V+T GGP + T ++A+ Sbjct: 235 AEIDGANPFQRFTSITLPFLAPTIAITVLLRTVWIANFADLIIVMTNGGPADRTQIVASY 294 Query: 253 SFQRAIPGGALGEGAALA 270 F +A G +A+A Sbjct: 295 IFTQAFRRLDFGYASAIA 312 >mlr2245 [G] COG1175 ABC-type sugar transport systems, permease components Mlo Mesorhizobium loti Length = 309 Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 148/272 (54%) Query: 8 NRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAGDSLAQ 67 R +G++++APAV L++VF PLG+ W+ + + GE +FIGLDN+ + D+ Sbjct: 22 RRQWIGLIYVAPAVALVMVFFVIPLGMTAWMSLHNWPLMGEHTFIGLDNYWAILRDTRFW 81 Query: 68 LSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWL 127 +L T +YTV +I F + LAI + K PL +R +P +V A ++L + WL Sbjct: 82 NALKFTGYYTVVVTIAIFAVAFPLAIFIEKPRPLTNLYRTFFFMPAVVGFASASLLWSWL 141 Query: 128 YDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISP 187 + + S A + +GLIDR + L A WS + VW+ F I L+ GLQ+I Sbjct: 142 LNVDSGLFSPAAYDLGLIDRKFNLLATFQPAFWSIIAMVVWKVAGFTMIILMTGLQSIPQ 201 Query: 188 SLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATH 247 L EAA IDGA P+ +FR +TLPL+ +A+ + SV + F Y++ RGGP N T Sbjct: 202 DLQEAAVIDGAGPFARFRAITLPLMRRTLALALILSVAGSILAFDQFYIILRGGPRNQTL 261 Query: 248 LMATLSFQRAIPGGALGEGAALATYMIPFLLA 279 F ++ LG GAAL+ ++ L+A Sbjct: 262 TAVYWIFNQSFVSFKLGYGAALSMVLLVILVA 293 >AGpA678 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 337 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 155/288 (53%), Gaps = 6/288 (2%) Query: 7 NNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKI---GGEGSFIGLDNFTYLAGD 63 + +++LG + +APAV+++ + +PL L I L F KI GG L N+T+L Sbjct: 48 SRQHLLGYILIAPAVLMVAAIIVWPLVLAIDLSFQQVKIPRLGGASRPFSLSNYTWLFSS 107 Query: 64 SLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALA 123 LS + T+ V + +GL A+L N ++ R + LPW VP ++ + Sbjct: 108 PEFWLSCWVTLKLVVVVTAGSVAVGLSTALLANNRFKGRSVARLGMALPWAVPEIIAVVI 167 Query: 124 FWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQ 183 F W++D F + W K+G D+ I ++ A W+ VW+G PFV+I LAGLQ Sbjct: 168 FAWMFDTSFGLFGWLAIKLGFTDQMIPWVSSSTAAFWAVAITMVWKGFPFVSIMCLAGLQ 227 Query: 184 TISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPL 243 +I Y AA +DGA+ WQ+FR +T+PLL P++ V + ++L+ F DF +I VLT GGPL Sbjct: 228 SIPADYYAAAKVDGASVWQRFRWITMPLLMPVLGVTLVLTLLWVFRDFSIIKVLTGGGPL 287 Query: 244 NATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRR 291 +T ++ +++ +A G AA+ L+ I+ S L RR Sbjct: 288 RSTQTLSIMTYDQAFQYHNFGRAAAVGVLT---LVICIVASLLMLGRR 332 >PM1761 [G] COG1175 ABC-type sugar transport systems, permease components Pmu Pasteurella multocida Length = 294 Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 163/295 (55%), Gaps = 3/295 (1%) Query: 5 FLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTK-IGGEGSFIGLDNFTYLAGD 63 + + N +F+ PA++++ V YP I+ FT+ I SF+GL N+ + D Sbjct: 2 YYKHHNYTRWIFVLPAILVVSVLFIYPFLSSIFYSFTNKNLIMPHYSFVGLANYRAVLSD 61 Query: 64 SLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALA 123 +S FN++ +T+ + + ++G +LA+ LN+ K ++ ++++PW PT + A + Sbjct: 62 PNFWMSFFNSLKWTIFSLTGQVLVGFFLALALNRVKHFKWLYKILLIIPWAFPTIVIAFS 121 Query: 124 FWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQ 183 + W+ + + + L ++GL++ +FL D A VF N+W G P + +++L+ LQ Sbjct: 122 WQWILNGVYGYLPNMLVQLGLMEIAPNFLSDRTWAFVCLVFINIWFGAPMIMVNVLSALQ 181 Query: 184 TISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPL 243 T+ YEAA IDGA WQ FR++TLP + ++ +++ ++ F +F +IY++T GGP Sbjct: 182 TVPADQYEAAKIDGANAWQIFRYITLPHIKVVVGLLVVLRTVWVFNNFDIIYLITGGGPA 241 Query: 244 NATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGD 298 NAT + ++ LG +A+ + FLL ++ F YF + R W++ G Sbjct: 242 NATMTLPIFAYDMGWGSKLLGRSSAVTVLLFIFLL-SVCFIYFKIINR-WEKEGK 294 >TM0811 [G] COG1175 ABC-type sugar transport systems, permease components Tma Thermotoga maritima Length = 300 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 3/282 (1%) Query: 11 VLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYLAGDSLAQLSL 70 +L F+ +L+V+F+ YPL GI + F I GE +IGL N+ L D L + Sbjct: 15 LLAFFFITIPTLLMVLFIYYPLVFGIKISFYQYDIVGESLYIGLKNYVDLLRDPLFWNAF 74 Query: 71 FNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDA 130 N++ Y + L+ ++ + LA+LL++ + + FR ++ LP + P ++A+ + W+Y Sbjct: 75 KNSLLYLLVVPPLQ-LISILLAVLLDRAIRGRNLFRTLIFLPVVTPITIAAITWQWMYRE 133 Query: 131 QFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLY 190 + I++ L + +ID I FL DP A ++ +F +W+G + + LAGLQ+I L Sbjct: 134 K-GFINFLLQSLHIIDEPIAFLSDPKIALFAIMFVTMWKGFGYYMVIYLAGLQSIPRELI 192 Query: 191 EAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMA 250 EAA +DGA P Q F VT+PLL P I T S + F IY +T+GGP++AT M Sbjct: 193 EAARVDGAKPSQVFFKVTIPLLKPYILFCSTMSSIAALNVFGEIYAMTKGGPVHATETMG 252 Query: 251 TLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRG 292 + RA G A A + F++ A F L R G Sbjct: 253 IFIYNRAFEYLQFGYSNAAAV-LFSFVVIAFSLLNFYLFREG 293