BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0095.p         (112 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    75   5e-14
CC2530 Non COG                                                         59   3e-09
CC0068 Non COG                                                         58   6e-09

>PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Pae Pseudomonas
           aeruginosa
          Length = 115

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDG 60
           ++LC  + L E  +RGF  +   +  +F +RR  +   + + CPH G PL  + D + D 
Sbjct: 10  IHLCPSSHLAEGNSRGFLVD---ERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDTFLDD 66

Query: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGD 110
           +   + CA+HGALF   +G C  GPC G+ L A+P R +D  GL V+  D
Sbjct: 67  SASLIRCASHGALFLIESGECVAGPCAGERLRALPCR-EDAEGLWVELDD 115


>CC2530 Non COG
          Length = 90

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 38/73 (52%)

Query: 28  FVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDGTGQHLVCAAHGALFDPLTGVCTLGPCQ 87
           FV+RRG+ V  + D CPH G PL    D Y    G  ++C+ HGA+F    G C  GPC 
Sbjct: 12  FVVRRGEAVFGYVDRCPHAGLPLAQELDRYLTPDGDLILCSWHGAVFKVEDGACVGGPCT 71

Query: 88  GDTLTAVPLRIDD 100
           G  L   P+   +
Sbjct: 72  GARLKPWPVEARE 84


>CC0068 Non COG
          Length = 122

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 3   LCHITQLPENGARGFD-TESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDGT 61
           LC + ++   G++GF   E       FV+R+G+ +  + DSCPH G PL G    Y    
Sbjct: 17  LCGLDEIASPGSKGFRWREGDAMFAGFVVRKGEALVGYVDSCPHAGWPLAGFAGRYLTRD 76

Query: 62  GQHLVCAAHGALFDPLTGVCTLGPCQGDT-LTAVPLRIDD 100
              ++C+ H ALF    G C  GPC     LT  P+ + D
Sbjct: 77  NDLILCSGHAALFRIEDGGCVAGPCPTSARLTPWPVAVRD 116