BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0019.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li... 177 1e-44 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 176 5e-44 MT1062 [TK] COG0745 Response regulators consisting of a CheY-lik... 170 2e-42 Rv1033c [TK] COG0745 Response regulators consisting of a CheY-li... 170 2e-42 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 167 2e-41 FN0585 [TK] COG0745 Response regulators consisting of a CheY-lik... 163 3e-40 Cgl0850 [TK] COG0745 Response regulators consisting of a CheY-li... 163 3e-40 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 162 6e-40 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 162 6e-40 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 160 2e-39 >RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 232 Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 142/222 (63%), Gaps = 10/222 (4%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDAL-------SQRFNAAVLVLDIGLPGID 53 L+ EDD L DGL+R L G+ V +G A +Q ++ +L+LD+GLP + Sbjct: 4 LIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYD--LLILDVGLPRLS 61 Query: 54 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 113 G EVL+R+R+ G PVL+LTA D++ +RV GL+LGADDY+ KPFA EL AR++AL+RR Sbjct: 62 GLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRR 121 Query: 114 SAPQPAQLTVGG-LSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 172 A L G L+ D + A I + ++LS RE +LE L+ A R+VSK+Q++D + Sbjct: 122 GTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDHL 181 Query: 173 LPWGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 214 WGE+ + NA+EVYV R+R KI G+ I T+RG GY LE+ Sbjct: 182 CGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCLER 223 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 134/218 (61%), Gaps = 7/218 (3%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LLVED P L + + + L G+TV + +G A S+ + A+ +LD+GLP +DGFE Sbjct: 4 LLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEY--ALAILDVGLPRMDGFE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 VL R+R G PVL+LTAR + DRVHGL LGADDYL KPF EL AR+KAL+RRS Sbjct: 62 VLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVL 121 Query: 117 QPAQLT-VGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 175 QL G L D T+R +D + + L+ RE VLE ++ RV+SK+Q+ V Sbjct: 122 GGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGL 181 Query: 176 GEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLE 213 E+ + +A+E+YV R+R K+ V I T RG GY+LE Sbjct: 182 DEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLE 219 >MT1062 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain MtC Mycobacterium tuberculosis CDC1551 Length = 276 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 11/225 (4%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGFEVL 58 LLV+D+P LT+ + L+ G+ V ++G +A+++ + VLVLDI LP +DG E+L Sbjct: 54 LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLEIL 113 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA--- 115 RR+R + TP L LTARD++ DRV GL GADDY+ KPF+ ELVAR++ L+RRS+ Sbjct: 114 RRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSSHLE 173 Query: 116 -PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 174 P L VG L+LD A++ DG I LS E+ +L +LM++ R +S+ +I+D V Sbjct: 174 RPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV-- 231 Query: 175 WGEDFT--INAVEVYVSRIRLKI-ADSGVAIRTIRGFGYMLEKSE 216 W DF + V++Y+S +R KI +D I T+RG GYML E Sbjct: 232 WNYDFAGRTSIVDLYISYLRKKIDSDREPMIHTVRGIGYMLRPPE 276 >Rv1033c [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mtu Mycobacterium tuberculosis H37Rv Length = 257 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 11/225 (4%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGFEVL 58 LLV+D+P LT+ + L+ G+ V ++G +A+++ + VLVLDI LP +DG E+L Sbjct: 35 LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLEIL 94 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA--- 115 RR+R + TP L LTARD++ DRV GL GADDY+ KPF+ ELVAR++ L+RRS+ Sbjct: 95 RRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSSHLE 154 Query: 116 -PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 174 P L VG L+LD A++ DG I LS E+ +L +LM++ R +S+ +I+D V Sbjct: 155 RPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV-- 212 Query: 175 WGEDFT--INAVEVYVSRIRLKI-ADSGVAIRTIRGFGYMLEKSE 216 W DF + V++Y+S +R KI +D I T+RG GYML E Sbjct: 213 WNYDFAGRTSIVDLYISYLRKKIDSDREPMIHTVRGIGYMLRPPE 257 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 141/217 (64%), Gaps = 3/217 (1%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAA--VLVLDIGLPGIDGFEVL 58 LLVED+ VL++GLS +L G+ V V++G A + + +++LD+ LP +DG EVL Sbjct: 23 LLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGIEVL 82 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP-Q 117 R MR+ + VL+LTAR T ++V GL+LGADDY++KPF E AR++ L+RR+A + Sbjct: 83 RSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNAGLR 142 Query: 118 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 + L+ G + D ++ DGR +++ RE +LE L A +VV+K+ I+ ++ + + Sbjct: 143 SSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTGFDD 202 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 214 D + NA+E YVSR+R ++A G+ ++T RG GY LEK Sbjct: 203 DISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYLEK 239 >FN0585 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Fnu Fusobacterium nucleatum Length = 224 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 142/221 (64%), Gaps = 5/221 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS--QRFNAAVLVLDIGLPGIDGFEVL 58 L+VED+ L + +S+ L + F+V +V +G +AL + V++LD+ +P ++G+EV+ Sbjct: 4 LVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGYEVV 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 + +RA N T VL+LTARD I +++ GL+LGADDYLVKPF EL+ARI+AL+RR Sbjct: 64 KNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKYGNI 123 Query: 119 A-QLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 + +L + L +D + K G+ IEL+ +E+ VLEYL+Q+ RV+S+ +I D V + Sbjct: 124 SNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWDYAY 183 Query: 178 DFTINAVEVYVSRIRLKI--ADSGVAIRTIRGFGYMLEKSE 216 + N ++V + IR KI DS I T RG GY+L++ E Sbjct: 184 EGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVLKEDE 224 >Cgl0850 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Cgl Corynebacterium glutamicum Length = 232 Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 145/229 (63%), Gaps = 16/229 (6%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGFEVL 58 L+V+D+ + D L R L+ +G+ V +G AL + A+++LD+ +PG+DG EV Sbjct: 4 LVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLEVC 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 R +R+ G++ P+L+LTARD + DRV GL+ GADDYL KPFA EL+AR+++L+RRSA + Sbjct: 64 RHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSAVES 123 Query: 119 AQ--------LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIID 170 Q L+ G L+LD ++ +GR I L+ E+ +L+ L+++ +V+++ QI++ Sbjct: 124 NQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQILE 183 Query: 171 AVLPWGEDFTI--NAVEVYVSRIRLKIADSGV--AIRTIRGFGYMLEKS 215 V WG DF NA+EVY+ +R K G I T+RG GY+L ++ Sbjct: 184 EV--WGCDFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVLRET 230 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 136/218 (62%), Gaps = 3/218 (1%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAA--VLVLDIGLPGIDGFEVL 58 LLVED+ L +GLS +L G+ V V++G A + + +++LD+ LP +DG +VL Sbjct: 4 LLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGLDVL 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 R MRA N VL+LTAR T +RV GL+LGADDYL+KPF E AR++ L+RR A Sbjct: 64 RAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQAGLR 123 Query: 119 AQ-LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 A ++ G +SLD ++ G IE+ RE +LE L A +VV+K I+ ++ + Sbjct: 124 ASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTGLDD 183 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKS 215 D + NA+E YVSR+R ++A G+ +RT RG GY L+K+ Sbjct: 184 DLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYLDKT 221 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 90/215 (41%), Positives = 133/215 (61%), Gaps = 5/215 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAA--VLVLDIGLPGIDGFEVL 58 LL+EDD ++ DG+ L+ GF+V G ++A ++LD+ LPG+DG ++L Sbjct: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 R R G PVL+LTARD + +RV GL LGADDYL KPFA E+ AR++AL+RR+ Q Sbjct: 64 REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQA 123 Query: 119 A-QLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 + +L G + LD + A + G + L +E+ +LE LM++A RV+S++ I + + W E Sbjct: 124 SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDE 183 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYML 212 + T NAVEV+V +R K+ IRT+ G GY L Sbjct: 184 EVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 137/219 (62%), Gaps = 9/219 (4%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNG----NDALSQRFNAAVLVLDIGLPGIDGFE 56 LL EDD +L DG+ L G TV V +G N ++ F+ +LVLDIGLP G + Sbjct: 4 LLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFD--LLVLDIGLPRRSGLD 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 +LR +R G TPVLLLTARD + DRV GL+ GADDYL KPF EL AR++AL RR+ Sbjct: 62 ILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTTG 121 Query: 117 QP-AQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 175 + QL G L LD AT + + G+ +EL+ RE+ +L L++++ +V+S+ Q+ ++ W Sbjct: 122 RALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYGW 181 Query: 176 GEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 214 D NA+EV+V +R K+ + IRT+RG GY +++ Sbjct: 182 SGDVESNAIEVHVHHLRRKLGNQ--LIRTVRGIGYGIDQ 218