BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0011.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 291 1e-78 mll7953 [TK] COG0745 Response regulators consisting of a CheY-li... 216 4e-56 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 198 6e-51 RSc1736 [TK] COG0745 Response regulators consisting of a CheY-li... 189 3e-48 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 188 8e-48 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 182 4e-46 STM2785 [TK] COG0745 Response regulators consisting of a CheY-li... 181 1e-45 RSc2935 [TK] COG0745 Response regulators consisting of a CheY-li... 174 1e-43 FN0585 [TK] COG0745 Response regulators consisting of a CheY-lik... 173 3e-43 XF0322 [TK] COG0745 Response regulators consisting of a CheY-lik... 168 7e-42 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/219 (65%), Positives = 173/219 (78%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDN LA WL + L+ +F VD A+DGE AD +L ++YDVVLLDL LP L G+ Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL+RLR+R N VPVMILTA+G ID+KV CLGAGADDYLVKPFEIREL+ARI+VLVRR T Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P A E+ CG+L Y + +R FA+ G L LPAREH VLE+L+L+ G+TVSK AL+ GVF Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLR 219 L ++ S +AIE+YI RLRKKL+ S A I+TLRGLGYLLR Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLR 219 >mll7953 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 150/222 (67%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M+LLL+EDN +LA WL + L++ + VDI DGE + L ++ +V+LDL LP++ G Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLR LR R N VPV++LTA+ S+D +V+ L GADDYL KPF+I EL ARI+ +RR Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 A + CG+LV+D+NTR F++ G LAL REH VLE L+++ G+TVSK AL ++ Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 + AIE+Y+ R+RKKL+ S I TLRGLGYLLR D Sbjct: 181 FETDADPSAIEIYVHRVRKKLEGSRVQIATLRGLGYLLRHED 222 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 107/218 (49%), Positives = 139/218 (63%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+ED+PQLA + Q LK + VD+ DG AD L E Y + +LD+ LP++ G Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL RLR R +PV++LTA G + ++V L GADDYL KPFE+ EL AR+K L+RR Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 CG LVYD TR+F++ L L +RE VLE +I R G+ +SK L VF Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 L EE SADAIE+Y+ RLRKKL+ I+T RGLGYLL Sbjct: 181 LDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >RSc1736 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 230 Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 113/218 (51%), Positives = 152/218 (69%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+EDNP+LA LE+ L + F VD DG AD +L ++Y ++LLDL LP+L G Sbjct: 1 MRILLVEDNPKLAGTLEEALGQAGFTVDCVHDGHAADLLLTTQDYALLLLDLGLPRLDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLRRLR R N +PVMILTA G+++E+V L GADDYL KPF++ E+ AR + L+RR Sbjct: 61 EVLRRLRLRRNPLPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSH 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 + ++ CG L YD + F + G LAL RE VLEVL+LR G+ V+K A+ + +F Sbjct: 121 GHERTQLQCGPLHYDGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 ++E +ADAIE+Y+ RLRKKLD SG AI+ LRGLGYLL Sbjct: 181 INESVNADAIEIYVHRLRKKLDGSGVAIVMLRGLGYLL 218 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 147/218 (67%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+EDN LA L +L+ + VD+ +DG A V E++D+V+LDL LP++ G Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 +VLR +R R N V+ILTA G+ +E+V+ L GADDYL+KPF+I E AR++VL+RRQ Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 +A+ + GN+ D +R F+ G+ + +PARE +LE+L +R GK V+K A+++ + Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 L ++ S +AIE Y+SRLRK+L G + T RG+GY L Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYL 218 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 147/220 (66%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 +++LL+EDN L+ L +L+ + VD+ +DG AD + E++D+V+LDL LP++ G Sbjct: 20 LRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 79 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLR +R R + V+ILTA G+ +EKV+ L GADDY++KPF+I E AR++VL+RR Sbjct: 80 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 139 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 +++ + G +++D +R F+ G L +PARE +LEVL +R GK V+K A+++ + Sbjct: 140 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 199 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQ 220 ++ SA+AIE Y+SRLRK+L G + T RG+GY L + Sbjct: 200 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYLEK 239 >STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 224 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/226 (45%), Positives = 147/226 (65%), Gaps = 9/226 (3%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M+LLL EDN +LAHWLE+ L ++ F VD DG AD +L E Y + +LD+ +P + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 V++RLR+R +PV++LTA ++ ++V+ L GADDYL KPFE+ EL AR++ L+RR Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR-- 118 Query: 121 PDKAAEIH----CGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMK 176 A ++H G L++ + F + G LAL RE +L VL+ R+ + VS+ L + Sbjct: 119 --SAGQVHEVQQLGELIF-HDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFE 175 Query: 177 GVFSLSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 VFSL++E S ++IE+YI RLRKKL S I TLRGLGY+L + D Sbjct: 176 QVFSLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGD 221 >RSc2935 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 235 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 136/218 (62%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+ED +LA WL + L + F V+ AADG A+ L +D V+LDL LP+ G Sbjct: 1 MRILLVEDEGELAAWLARALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGF 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL +R R + PV+ILTA G++DE+V L AGADD+L KPF + EL AR+ L+RR Sbjct: 61 AVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRRSR 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 + CG L +D+ + F + G L+L REH L L+ + G+ +SK L VF+ Sbjct: 121 GRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 L + S DA+EV + RLRKKL SG I+T+RGLGYLL Sbjct: 181 LDSDSSPDAVEVVVHRLRKKLAGSGVQIVTVRGLGYLL 218 >FN0585 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Fnu Fusobacterium nucleatum Length = 224 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 143/222 (64%), Gaps = 2/222 (0%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MK+L++ED L + + + LK++ F VD DGE A + L +YDV++LD+M+PK++G Sbjct: 1 MKILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 V++ LR N V++LTA IDEK++ L GADDYLVKPF+ REL+ARI+ LVRR+ Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 + + E+ +L+ D++ + G + L +E++VLE LI +G+ +S+ + GV+ Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 LSEEPSADAIEVYISRLRKKLD--RSGAAIMTLRGLGYLLRQ 220 + E ++ I+V I +RKK+D S I T RGLGY+L++ Sbjct: 181 YAYEGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVLKE 222 >XF0322 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 231 Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 137/218 (62%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M+LLLIEDN LA + + ++ H VD +DG A VLR + +D+V+LD+ LP L G Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHGHAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSLDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 +L LR+R + PV++LTA +I+++V L GADDYL KPF+ RE AR +VL+RR Sbjct: 61 QLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 + + G+ +D+ + + G + LP RE+ +LE+LI R G+ V K + +F+ Sbjct: 121 GSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 + +AIE+Y++RLR+KL+ + I+T+RG GYL+ Sbjct: 181 FDDNAGPNAIELYVARLRRKLEAAPLRIVTVRGAGYLI 218