BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0121.p         (409 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA166 [R] COG3550 Uncharacterized protein related to capsule b...   246   5e-65
VC0815 [R] COG3550 Uncharacterized protein related to capsule bi...   134   6e-31

>AGpA166 [R] COG3550 Uncharacterized protein related to capsule biosynthesis
           enzymes Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 440

 Score =  246 bits (629), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 143/328 (43%), Positives = 190/328 (57%), Gaps = 7/328 (2%)

Query: 31  RDAAALSVNLPVALDNLSEPRWPAFLIDLLPQGYGRAELLRQLGLDERTEASADWPLLCA 90
           RD  ALSV  PV L+N     WP FL+DL+PQG+ R +L   L L E + AS D PLL  
Sbjct: 56  RDHRALSVRYPVDLENRYSRSWPPFLLDLMPQGHARRKLAEHLSLAEGSRAS-DLPLLLR 114

Query: 91  GAGNPIGNIRVLEAWEWVQAR-SAPQLRGFAMEEIAARSEDFNEYLAQHGLFLAGSSGVQ 149
            A   IGNIR+ EA E    R    + +G    EI  RS+ F E   + G+  +GSSG+Q
Sbjct: 115 SATGGIGNIRIKEAAEAETERLRGVERQGVTEAEILERSDRFMEVADRFGMLASGSSGLQ 174

Query: 150 GEWPKILLTRARDGLFYLDHALPDELAERHYIVKFGRGPDPDLADILRLEAPYMQMAARL 209
           GEWPK+ +T+A+DGL+Y D  + D+ A RH IVK  R  +P    IL  EA Y ++A  +
Sbjct: 175 GEWPKVSMTQAKDGLYYPDSFVTDDEAVRHVIVKLVRSNEPVDRLILEGEALYSRIAQEI 234

Query: 210 GLHVHAALELHGKALFIPRFDREVR-GTQVLRHAQESIASLCGVTGFAAMPTHNAVCARL 268
           GL+VH         L IPRFDR+ + G   +R  QES+ S  GV  F  + +H A    L
Sbjct: 235 GLNVHEPSTYAESVLIIPRFDRKKKEGGGTVRLGQESLVSAIGVADFGHVGSHEAYIDVL 294

Query: 269 GEVATDPVTEIIEYLKRDIANIVLRNKDNHARNTAIRRDAQGRVGLTPLFDFAPMWLHPD 328
            + + +P  +I+EYLKRDIAN+ L N DNH RN+A+ +   G + L+PLFDFAPM +  +
Sbjct: 295 RQYSANPFADIVEYLKRDIANLALGNPDNHGRNSALSKHQDGTIRLSPLFDFAPMRIAKE 354

Query: 329 GIARRMRWE-RDDGGS---PQWASVIAQ 352
           GI R  RW    DGG    P W  + A+
Sbjct: 355 GIVRSTRWAMMRDGGRDHLPDWKRICAE 382


>VC0815 [R] COG3550 Uncharacterized protein related to capsule biosynthesis
           enzymes Vch Vibrio cholerae
          Length = 456

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 175/350 (50%), Gaps = 31/350 (8%)

Query: 15  TFFAYETVHAIDYLGRRDAAALSVNLPVAL--DNLSEPRWPAFLIDLLPQGYGRAELLRQ 72
           T   Y + +A+++  + D  A+S+N PV+   D++ +P W  FL D++P G  R   ++ 
Sbjct: 36  TELNYLSDYALEHYDKDDFHAVSLNHPVSFIFDDMGKPGWLKFLDDIMPSGASRRYWVKH 95

Query: 73  LGLDERTEASADWPLLCAGAGNPIGNIRVLEAWEWVQARSAPQLRGFAMEEIAARSEDFN 132
           L +++ +    D+ LL  G  +PIGN+R+ ++    +   A  L  F+++++  R+ DF 
Sbjct: 96  LDIEDLSSDEQDYVLLKFGTMSPIGNLRIKDSLP-ERYEVADNLY-FSVDDVKNRAGDFL 153

Query: 133 EYLAQHGLFLAGSSGVQGEWPKILLTRARDG-----LFYLDHALPDELA-ERHYIVKFGR 186
           +Y  Q G    G++G  GE PK++L    D        ++D    D  + + HY+VK+ R
Sbjct: 154 DYAQQRGAAAGGATGAGGEAPKLILRCGFDHGSGSEKIWIDPYQDDNSSHDLHYLVKYPR 213

Query: 187 GPDPDL-ADILRLEAPYMQMAARLGLHVHAA----LE--LHGKALFIPRFDREVRGTQVL 239
           G    +  +ILR E  +      +G+   +     LE  L+  +L++PRFD ++   Q+ 
Sbjct: 214 GSRSTIDCNILRAEFYFYHELTEMGVETISTDGMRLEEGLNYPSLWLPRFDVQIIDQQIE 273

Query: 240 RHAQESIASLCGVTGFAAMPTHNAVCARLGEVAT------------DPVTEIIEYLKRDI 287
           R   ES+ S+    G      H      L E  T            D    +IE++KRD+
Sbjct: 274 RFGMESVYSILN-KGAGVTLDHETTIRTLIEKITESNMVKHQGYRFDTQAFVIEWVKRDL 332

Query: 288 ANIVLRNKDNHARNTAIRRDAQGRVGLTPLFDFAPMWLHPDGIARRMRWE 337
            NI+  N DNH RNT+  +   G + L P++DFAPM   P GI R  +W+
Sbjct: 333 LNILFGNSDNHGRNTSFLK-GDGVIKLAPIYDFAPMKADPAGIPRTTKWK 381