BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0111.p (144 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20316 [G] COG1879 ABC-type sugar transport system, periplasmi... 155 3e-38 YPO1813 [G] COG1879 ABC-type sugar transport system, periplasmic... 130 1e-30 AGl86 [G] COG1879 ABC-type sugar transport system, periplasmic c... 114 9e-26 YPO3633 [G] COG1879 ABC-type sugar transport system, periplasmic... 110 8e-25 YPO3328 [G] COG1879 ABC-type sugar transport system, periplasmic... 109 2e-24 Z0415 [G] COG1879 ABC-type sugar transport system, periplasmic c... 101 4e-22 ECs0374 [G] COG1879 ABC-type sugar transport system, periplasmic... 101 4e-22 AGl271 [G] COG1879 ABC-type sugar transport system, periplasmic ... 91 8e-19 SMb20484 [G] COG1879 ABC-type sugar transport system, periplasmi... 88 7e-18 SMc02324 [G] COG1879 ABC-type sugar transport system, periplasmi... 71 7e-13 >SMb20316 [G] COG1879 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 333 Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 100/134 (74%), Gaps = 3/134 (2%) Query: 3 KKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTT 62 K +AC + AL A+ A AQ+ P +VTVVK+TG +WF RME GV + NP V+T Sbjct: 6 KIAACTV--ALGALCAAQLAVAQDAP-SVVTVVKVTGENWFTRMEEGVVAYGKDNPAVST 62 Query: 63 RQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQ 122 QIGPA++DAAQQ RL+EDLVAK V+AIAVV MDP LE V KRA++RGIK++THEAD+ Sbjct: 63 SQIGPAKADAAQQLRLIEDLVAKNVNAIAVVPMDPSALEGVFKRAMNRGIKIITHEADSL 122 Query: 123 KNTLVDIEAFDNTV 136 KNT VDIEAFDN V Sbjct: 123 KNTQVDIEAFDNKV 136 >YPO1813 [G] COG1879 ABC-type sugar transport system, periplasmic component Ype Yersinia pestis Length = 331 Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 94/140 (67%), Gaps = 3/140 (2%) Query: 1 MNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGV 60 M K C++ + + ++G A +++ IVTVVK+ G W+ RM G KEF NP + Sbjct: 1 MMIKKLCLIAALVFSLGIMGAYAQRSQ--SIVTVVKVIGEPWYTRMGEGAKEFGDENPSI 58 Query: 61 TTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEAD 120 +TR +GPA++D+A Q R+VEDL+AKKVDA+AV MDP TLE LK+A+ RGI VVT+EA Sbjct: 59 STRTVGPARADSALQLRIVEDLIAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAY 118 Query: 121 NQKNTLVDIEAFDN-TVGAQ 139 + N DIEA DN T GA+ Sbjct: 119 DMVNMHADIEAVDNATFGAK 138 >AGl86 [G] COG1879 ABC-type sugar transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 380 Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 1/111 (0%) Query: 24 AQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLV 83 A K I TVVK+ GI+WF+RM GV++F + G +GP+Q+DAA Q +LVE+L+ Sbjct: 70 ASGKKYTIATVVKVDGIAWFDRMRDGVEQFKG-DTGNDVWMVGPSQADAAAQVQLVENLI 128 Query: 84 AKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDN 134 A+ VDAIA+V +EPVLK+A DRGI V++HEA N +N DIEAFDN Sbjct: 129 AQGVDAIAIVPFSVEAVEPVLKKARDRGIVVISHEASNIQNVDFDIEAFDN 179 >YPO3633 [G] COG1879 ABC-type sugar transport system, periplasmic component Ype Yersinia pestis Length = 352 Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 9/135 (6%) Query: 5 SACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQ 64 SAC+L F + A K +I V K+TGI WF RMEVGV E AA V Q Sbjct: 37 SACML--------FTTQTLAAEKKHEIAVVAKVTGIPWFTRMEVGVNE-AAKKLNVNAYQ 87 Query: 65 IGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKN 124 +GPA D AQQ +++EDL+AK VDAI VV D LEPVLK+A ++GI V+THE+ +Q+ Sbjct: 88 VGPATPDPAQQVKVIEDLIAKNVDAIIVVPNDAKVLEPVLKKAQEKGIVVLTHESPDQRI 147 Query: 125 TLVDIEAFDNTVGAQ 139 D+E D+ AQ Sbjct: 148 GQWDVETIDSEKYAQ 162 >YPO3328 [G] COG1879 ABC-type sugar transport system, periplasmic component Ype Yersinia pestis Length = 367 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 7 CVLVSALAAVGFASA----LQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTT 62 C++ + LA+ SA Q NKP + VVK+ GI WFN ME G+K A GV Sbjct: 41 CLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQA-LGVNA 99 Query: 63 RQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQ 122 Q+GP +D A+Q R +EDL+AKKVD I VV D LEPVLKRA + GIKV+THE+ Q Sbjct: 100 WQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQ 159 Query: 123 KNTLVDIEAFD 133 N D E D Sbjct: 160 INADWDFELLD 170 >Z0415 [G] COG1879 ABC-type sugar transport system, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 328 Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 5/136 (3%) Query: 1 MNKKSACVLVSAL--AAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANP 58 MNK+ +VS+L A ++ LQA K + V + K+ G+ WFNRM GV E A Sbjct: 2 MNKRFVINMVSSLLLGAALISAPLQAAEKVV--VNISKVDGMPWFNRMGEGVVEAGKAF- 58 Query: 59 GVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHE 118 GV Q+GP+ +DA QQ +++EDL+A+KV+AI +V D LEPV K+A D GI V+T+E Sbjct: 59 GVNASQVGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNE 118 Query: 119 ADNQKNTLVDIEAFDN 134 + Q + DIE DN Sbjct: 119 SPGQPSANWDIEIIDN 134 >ECs0374 [G] COG1879 ABC-type sugar transport system, periplasmic component Ecs Escherichia coli O157:H7 Length = 328 Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 5/136 (3%) Query: 1 MNKKSACVLVSAL--AAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANP 58 MNK+ +VS+L A ++ LQA K + V + K+ G+ WFNRM GV E A Sbjct: 2 MNKRFVINMVSSLLLGAALISAPLQAAEKVV--VNISKVDGMPWFNRMGEGVVEAGKAF- 58 Query: 59 GVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHE 118 GV Q+GP+ +DA QQ +++EDL+A+KV+AI +V D LEPV K+A D GI V+T+E Sbjct: 59 GVNASQVGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNE 118 Query: 119 ADNQKNTLVDIEAFDN 134 + Q + DIE DN Sbjct: 119 SPGQPSANWDIEIIDN 134 >AGl271 [G] COG1879 ABC-type sugar transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 325 Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Query: 34 VVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVV 93 VVKI GI WFN ME G+KE + GV +GP +D A Q R +EDL+A+KVD I VV Sbjct: 30 VVKIGGIPWFNAMEAGIKE-QSNKLGVDGFMVGPTSADPALQVRAIEDLIAQKVDFIGVV 88 Query: 94 SMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIE 130 D LEPVLK+A GIKV+THE+ Q D E Sbjct: 89 PNDAKVLEPVLKKAQAAGIKVITHESPEQLGADWDFE 125 >SMb20484 [G] COG1879 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 330 Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/97 (48%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Query: 34 VVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVV 93 VVKI GI WFN ME G+KE GV +GP +D A Q R +EDL+A+ V I VV Sbjct: 33 VVKIGGIPWFNAMEAGIKE-RGEKLGVDAFMVGPTSADPALQVRAIEDLIAQNVKVIGVV 91 Query: 94 SMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIE 130 D LEPVL +A ++GI V+THE+ +QK D E Sbjct: 92 PNDAKVLEPVLTKAREKGIIVITHESPSQKGADWDFE 128 >SMc02324 [G] COG1879 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 329 Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 18/139 (12%) Query: 7 CVLVSALAAVGF-ASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQI 65 ++V+A AV A+A A+NK I +V VK GI +F G +E A V Sbjct: 6 SLMVTAAVAVALMANAAHAENKKIALV--VKALGIGFFEAANKGAQEAAKELGDVEIIYT 63 Query: 66 GPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNT 125 GP + A Q ++ L+A+KVDAIAV + D L P LK+A+DRGIKV++ Sbjct: 64 GPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVIS--------- 114 Query: 126 LVDIEAFDNTVGAQGRRLH 144 +D+ V +GR +H Sbjct: 115 ------WDSGVAKEGRLMH 127