BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0088.p (94 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1309 [J] COG0238 Ribosomal protein S18 Rso Ralstonia solanace... 144 5e-35 NMB1321 [J] COG0238 Ribosomal protein S18 Nme Neisseria meningit... 115 3e-26 NMA1535 [J] COG0238 Ribosomal protein S18 NmA Neisseria meningit... 115 3e-26 STM4393 [J] COG0238 Ribosomal protein S18 Sty Salmonella typhimu... 112 2e-25 rpsR [J] COG0238 Ribosomal protein S18 Eco Escherichia coli K12 112 3e-25 ECs5178 [J] COG0238 Ribosomal protein S18 Ecs Escherichia coli O... 112 3e-25 BU563 [J] COG0238 Ribosomal protein S18 Buc Buchnera sp. APS 112 3e-25 ZrpsR [J] COG0238 Ribosomal protein S18 EcZ Escherichia coli O15... 110 6e-25 XF2560 [J] COG0238 Ribosomal protein S18 Xfa Xylella fastidiosa ... 109 1e-24 HI0545 [J] COG0238 Ribosomal protein S18 Hin Haemophilus influenzae 109 2e-24 >RSc1309 [J] COG0238 Ribosomal protein S18 Rso Ralstonia solanacearum Length = 92 Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 66/83 (79%), Positives = 76/83 (91%) Query: 10 SKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHY 69 +K K + QQQNPLFKRKKFCRFT AGVEQ+DYKD+DTLKDF+ ENGKI PARLTGT++HY Sbjct: 8 AKNKKRFQQQNPLFKRKKFCRFTVAGVEQIDYKDLDTLKDFIGENGKITPARLTGTRSHY 67 Query: 70 QRQVDTAIKRARYLALLPYTDLH 92 QRQ+DTAIKRAR+LAL+PYTD H Sbjct: 68 QRQLDTAIKRARFLALMPYTDQH 90 >NMB1321 [J] COG0238 Ribosomal protein S18 Nme Neisseria meningitidis MC58 Length = 76 Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 51/70 (72%), Positives = 61/70 (87%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 FKR+KFCRFTA +++VDYK VD LKDF+ ENGKI+PAR+TGTKA YQRQ+ A+KRAR+ Sbjct: 6 FKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPARITGTKAFYQRQLAVAVKRARF 65 Query: 83 LALLPYTDLH 92 LALLPYTD H Sbjct: 66 LALLPYTDQH 75 >NMA1535 [J] COG0238 Ribosomal protein S18 NmA Neisseria meningitidis Z2491 Length = 76 Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 51/70 (72%), Positives = 61/70 (87%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 FKR+KFCRFTA +++VDYK VD LKDF+ ENGKI+PAR+TGTKA YQRQ+ A+KRAR+ Sbjct: 6 FKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPARITGTKAFYQRQLAVAVKRARF 65 Query: 83 LALLPYTDLH 92 LALLPYTD H Sbjct: 66 LALLPYTDQH 75 >STM4393 [J] COG0238 Ribosomal protein S18 Sty Salmonella typhimurium LT2 Length = 75 Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 47/71 (66%), Positives = 63/71 (88%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA GV+++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLRRAIKRARY 64 Query: 83 LALLPYTDLHN 93 L+LLPYTD H Sbjct: 65 LSLLPYTDRHQ 75 >rpsR [J] COG0238 Ribosomal protein S18 Eco Escherichia coli K12 Length = 75 Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 47/71 (66%), Positives = 63/71 (88%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA GV+++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARY 64 Query: 83 LALLPYTDLHN 93 L+LLPYTD H Sbjct: 65 LSLLPYTDRHQ 75 >ECs5178 [J] COG0238 Ribosomal protein S18 Ecs Escherichia coli O157:H7 Length = 75 Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 47/71 (66%), Positives = 63/71 (88%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA GV+++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARY 64 Query: 83 LALLPYTDLHN 93 L+LLPYTD H Sbjct: 65 LSLLPYTDRHQ 75 >BU563 [J] COG0238 Ribosomal protein S18 Buc Buchnera sp. APS Length = 75 Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 47/70 (67%), Positives = 62/70 (88%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA GV+++DYKD+ LK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDIAVLKNYITESGKIVPSRITGTRAKYQRQLSRAIKRARY 64 Query: 83 LALLPYTDLH 92 LALLPYTD H Sbjct: 65 LALLPYTDQH 74 >ZrpsR [J] COG0238 Ribosomal protein S18 EcZ Escherichia coli O157:H7 EDL933 Length = 75 Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 46/71 (64%), Positives = 63/71 (88%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA GV+++DY+D+ TLK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAEGVQEIDYEDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARY 64 Query: 83 LALLPYTDLHN 93 L+LLPYTD H Sbjct: 65 LSLLPYTDRHQ 75 >XF2560 [J] COG0238 Ribosomal protein S18 Xfa Xylella fastidiosa 9a5c Length = 76 Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 44/72 (61%), Positives = 65/72 (90%) Query: 22 LFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRAR 81 F+R+KFC+FTA G++++DYKD++TL+ ++ ENGKI+P+R+TGTK+ YQRQ+ TA+KRAR Sbjct: 4 FFRRRKFCKFTAEGIKEIDYKDLNTLRQYLTENGKIVPSRVTGTKSKYQRQLTTAVKRAR 63 Query: 82 YLALLPYTDLHN 93 +LAL+PYTD H+ Sbjct: 64 FLALIPYTDNHD 75 >HI0545 [J] COG0238 Ribosomal protein S18 Hin Haemophilus influenzae Length = 75 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 47/70 (67%), Positives = 61/70 (87%) Query: 23 FKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPARLTGTKAHYQRQVDTAIKRARY 82 F+R+KFCRFTA V ++DYKD+ TLK+++ E+GKI+P+R+TGT+A YQRQ+ AIKRARY Sbjct: 5 FRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRITGTRAKYQRQLARAIKRARY 64 Query: 83 LALLPYTDLH 92 LALLPYTD H Sbjct: 65 LALLPYTDNH 74