BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0076.p (114 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic d... 79 3e-15 BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do... 72 4e-13 Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic d... 71 6e-13 PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do... 69 4e-12 CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic do... 65 4e-11 jhp1483 [S] COG2257 Uncharacterized homolog of the cytoplasmic d... 64 8e-11 HP1575 [S] COG2257 Uncharacterized homolog of the cytoplasmic do... 64 9e-11 TM1672 [S] COG2257 Uncharacterized homolog of the cytoplasmic do... 63 2e-10 ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component Flh... 58 5e-09 ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component F... 58 7e-09 >BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Bsu Bacillus subtilis Length = 93 Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Query: 3 KPNIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQV 61 K P++ AVAL Y+ + AP+V+A G+G VA+ II A+++GV + E + LV L+ + Sbjct: 2 KEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHL 61 Query: 62 ELDQQIPPALYRTVAELLAWLYRIE 86 +D QIP ALY TVAE+ +++Y+++ Sbjct: 62 TVDDQIPEALYETVAEIFSFIYKLD 86 >BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Bha Bacillus halodurans Length = 92 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 1/80 (1%) Query: 9 QNAVALAYN-ASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQI 67 + AVA+ YN + AP+++ KG+GLVA+ +I RA E+ V + + LV LL Q+E+++ I Sbjct: 8 RQAVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVELLGQLEINETI 67 Query: 68 PPALYRTVAELLAWLYRIEN 87 P LY VAEL A++Y+I+ Sbjct: 68 PEELYEVVAELFAFIYQIDQ 87 >Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Cje Campylobacter jejuni Length = 93 Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 1 MEKPNIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLM 59 M K ++ AVAL Y + +AP+V+A G+G A II+ A+E GV + E ++L+ +L Sbjct: 1 MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILS 60 Query: 60 QVELDQQIPPALYRTVAELLAWLYRIEN 87 +++L +IPP +Y+ VAE+ A++Y++ N Sbjct: 61 KLDLGDEIPPNMYKAVAEVFAFIYQMAN 88 >PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Pae Pseudomonas aeruginosa Length = 111 Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 1/79 (1%) Query: 9 QNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQIP 68 + A+AL+Y+ QAAP + AKG +AEAI+A AR+ V ++E+ ELV LL ++EL IP Sbjct: 10 RQAIALSYD-GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIP 68 Query: 69 PALYRTVAELLAWLYRIEN 87 ALYRT+AE++A+ + ++ Sbjct: 69 EALYRTIAEIIAFAWHLKG 87 >CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Ccr Caulobacter vibrioides Length = 87 Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 5/82 (6%) Query: 3 KPNIPLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVE 62 KP I AVAL Y A P+VVA G+G + E II A+E GV + E L L +E Sbjct: 10 KPRI----AVALLYEEPNA-PKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQALSTIE 64 Query: 63 LDQQIPPALYRTVAELLAWLYR 84 +D++IP ALYR VAE+L++L + Sbjct: 65 IDEEIPEALYRAVAEVLSFLLK 86 >jhp1483 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB jHp Helicobacter pylori J99 Length = 90 Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 11 AVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQIPP 69 A ALAYN Q AP+V+A G G VA+ II +A+E + + + LV L++VELD IP Sbjct: 7 AAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVELDCAIPE 66 Query: 70 ALYRTVAELLAWLYRIEN 87 LY +V ++ WL +EN Sbjct: 67 ELYESVVQVFLWLNSVEN 84 >HP1575 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Hpy Helicobacter pylori 26695 Length = 90 Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 11 AVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQIPP 69 A ALAYN Q AP+V+A G G VA+ II +A+E + + + LV L++VELD IP Sbjct: 7 AAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVELDCAIPE 66 Query: 70 ALYRTVAELLAWLYRIEN 87 LY +V ++ WL +EN Sbjct: 67 ELYESVVQVFLWLNSVEN 84 >TM1672 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Tma Thermotoga maritima Length = 86 Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 1/81 (1%) Query: 8 LQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQ 66 ++ AVAL Y+ ++ +AP+VVAKG G VAE II AR G+ + E +++ L++++L + Sbjct: 6 IKKAVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLRLDLFSE 65 Query: 67 IPPALYRTVAELLAWLYRIEN 87 IP +Y +AE+ A+L R + Sbjct: 66 IPEEMYLVIAEIYAFLKRYDK 86 >ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB EcZ Escherichia coli O157:H7 EDL933 Length = 382 Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 5 NIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVE 62 N P +VAL Y+ ++ +AP+VVAKG GLVA I E+ V E+ L +L VE Sbjct: 267 NNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGXENNVPTLEAPPLARALYRHVE 326 Query: 63 LDQQIPPALYRTVAELLAWLYRIENMQL 90 + QQIP LY VAE+LAW+++++ +L Sbjct: 327 IGQQIPGQLYAAVAEVLAWVWQLKRWRL 354 >ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB Ecs Escherichia coli O157:H7 Length = 382 Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 5 NIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVE 62 N P +VAL Y+ ++ +AP+VVAKG GLVA I E+ V E+ L +L VE Sbjct: 267 NNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVE 326 Query: 63 LDQQIPPALYRTVAELLAWLYRIENMQL 90 + QQIP LY VAE+LAW+++++ +L Sbjct: 327 IGQQIPGQLYAAVAEVLAWVWQLKRWRL 354