BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0072.p (585 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0390 [NU] COG1766 Flagellar biosynthesis/type III secretory p... 485 e-136 fliF [NU] COG1766 Flagellar biosynthesis/type III secretory path... 447 e-125 ZfliF [NU] COG1766 Flagellar biosynthesis/type III secretory pat... 446 e-124 ECs2677 [NU] COG1766 Flagellar biosynthesis/type III secretory p... 446 e-124 STM1969 [NU] COG1766 Flagellar biosynthesis/type III secretory p... 439 e-123 YPO1830 [NU] COG1766 Flagellar biosynthesis/type III secretory p... 427 e-119 PA1101 [NU] COG1766 Flagellar biosynthesis/type III secretory pa... 371 e-102 BU073 [NU] COG1766 Flagellar biosynthesis/type III secretory pat... 316 1e-85 HP0351 [NU] COG1766 Flagellar biosynthesis/type III secretory pa... 233 8e-61 jhp0325 [NU] COG1766 Flagellar biosynthesis/type III secretory p... 231 5e-60 >RSp0390 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Rso Ralstonia solanacearum Length = 611 Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/557 (50%), Positives = 365/557 (65%), Gaps = 39/557 (7%) Query: 57 LWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQ 116 LWS+ YRVL+SN D DGGAI+A+LQQMNVPY+++DGG+AI+VPE VH+ARLKLAAQ Sbjct: 66 LWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 117 GLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKAS 176 GLPKGG GFELMENQK G SQF+EQVN+QRALEGELAR++ ++ VQ+ARVHLAL K S Sbjct: 126 GLPKGGLAGFELMENQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSKPS 185 Query: 177 VFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDT 236 VFVR+Q KP+ASV+L LYPGR LD QV AI HL+ASSVP+L VT+VDQ+G LLS Sbjct: 186 VFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLLS-A 244 Query: 237 TKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEA 296 + Q + LDPTQL YV+D++Q +KR+E+I+ P+VG NVRA+ TA+VD +EQ +E Sbjct: 245 SFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQMAET 304 Query: 297 YKPNQTKDSAAVRSKQSSEANSASNGT-SGVPGALSNQPPAPATAPIVNPAVANGAANQT 355 Y+PNQ + AVRS +SE+ G GVPGALSNQPP TAP + P AA Q Sbjct: 305 YRPNQDPANGAVRSTHTSESTQNKAGAQGGVPGALSNQPP---TAPRMLPTAPAPAAQQA 361 Query: 356 GAATPNGALPTPTATG--------------NSRKDETINYEVDKTVRYTQQPMGGVRRLT 401 A G +S +D TINYEVDKTVR T+ +G VRRL+ Sbjct: 362 AAGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRLS 421 Query: 402 VAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDM- 460 VAVVVNY+ GK +PL++AE ++ LVK+A+GY+ RGDS+NVVN+QFS + Sbjct: 422 VAVVVNYR----ADGK-TWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLP 476 Query: 461 --EPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKA 518 + ++PLWKQP MI A + KY +A L L F V+RP++ ++ ++E Sbjct: 477 TSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPVTATFVGR 536 Query: 519 EAEAAAA----AAAVAAGFDPDDPDAIVNLSGESEVDERAQYKAN------LETAKQWAK 568 E E A AA AG + + P + + G+ DE Q K N LET ++ A+ Sbjct: 537 EGEDPNAPIITGAAAPAGPELEGPSVVTD--GDEVPDELPQLKQNHDFEQKLETMRRVAQ 594 Query: 569 NDPKLVASIIKSWVNNE 585 +P+ VA++IK WV+NE Sbjct: 595 QNPRAVAAVIKQWVSNE 611 >fliF [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Eco Escherichia coli K12 Length = 552 Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust. Identities = 253/557 (45%), Positives = 367/557 (65%), Gaps = 37/557 (6%) Query: 38 RILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGT 97 +I LI+A +A +AVM + LW++ +YR LFSN +D+DGGAIV+ L QMN+PY++S+ Sbjct: 22 KIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASG 81 Query: 98 AILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSV 157 AI VP + VH+ RL+LA QGLPKGG VGFEL++ +K GISQF EQVN+QRALEGEL+R++ Sbjct: 82 AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTI 141 Query: 158 GSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPE 217 ++ V+ ARVHLA+PK S+FVR+Q+ P+ASV ++L PGR LD Q+SAIVHLV+S+V Sbjct: 142 ETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAG 201 Query: 218 LSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNV 277 L P VT+VDQ G+LL+ + + L+ QLKY D++ I +R+E+I++PIVGNGN+ Sbjct: 202 LPPGNVTLVDQGGHLLTQSNTSGR--DLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNI 259 Query: 278 RAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSASNGT-SGVPGALSNQPPA 336 A+ TA +DF+ EQ E Y+PN + AA+RS+Q +E+ + +G GVPGALSNQP Sbjct: 260 HAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAP 319 Query: 337 PATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGG 396 API P AN Q A+T + + P T +++ET NYEVD+T+R+T+ +G Sbjct: 320 ANNAPISTPP-ANQNNRQQQASTTSNSGPRST-----QRNETSNYEVDRTIRHTKMNVGD 373 Query: 397 VRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF 456 V+RL+VAVVVNYK D GK + PL+ + QI DL +EAMG+++ RGDSLNVVN+ F Sbjct: 374 VQRLSVAVVVNYKTLPD--GKPL--PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 Query: 457 STDMEP--EVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLA 514 ++ E E+P W+Q ID G+++LV V L+ + +RP +L+ R E + Sbjct: 430 NSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRP---QLTRRAEAMKAV 486 Query: 515 KEKAEAEAAAAAAAVAAGFDPDDPDAI-VNLSGESEVDE-RAQYKANLETAKQ----WAK 568 +++A+A DA+ V LS + ++ + RA + E Q + Sbjct: 487 QQQAQAREEVE-------------DAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 533 Query: 569 NDPKLVASIIKSWVNNE 585 NDP++VA +I+ W+NN+ Sbjct: 534 NDPRVVALVIRQWINND 550 >ZfliF [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein EcZ Escherichia coli O157:H7 EDL933 Length = 552 Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust. Identities = 253/557 (45%), Positives = 367/557 (65%), Gaps = 37/557 (6%) Query: 38 RILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGT 97 +I LI+A +A +AVM + LW++ +YR LFSN +D+DGGAIV+ L QMN+PY++S+ Sbjct: 22 KIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASG 81 Query: 98 AILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSV 157 AI VP + VH+ RL+LA QGLPKGG VGFEL++ +K GISQF EQVN+QRALEGEL+R++ Sbjct: 82 AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTI 141 Query: 158 GSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPE 217 ++ V+ ARVHLA+PK S+FVR+Q+ P+ASV ++L PGR LD Q+SAIVHLV+S+V Sbjct: 142 ETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAG 201 Query: 218 LSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNV 277 L P VT+VDQ G+LL+ + + L+ QLKY D++ I +R+E+I++PIVGNGN+ Sbjct: 202 LPPGNVTLVDQGGHLLTQSNTSWR--DLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNI 259 Query: 278 RAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSASNGT-SGVPGALSNQPPA 336 A+ TA +DF+ EQ E Y+PN + AA+RS+Q +E+ + +G GVPGALSNQP Sbjct: 260 HAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAP 319 Query: 337 PATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGG 396 API P AN Q A+T + + P T +++ET NYEVD+T+R+T+ +G Sbjct: 320 ANNAPISTPP-ANQNNRQQQASTTSNSGPRST-----QRNETSNYEVDRTIRHTKMNVGD 373 Query: 397 VRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF 456 V+RL+VAVVVNYK D GK + PL+ + QI DL +EAMG+++ RGDSLNVVN+ F Sbjct: 374 VQRLSVAVVVNYKTLPD--GKPL--PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 Query: 457 STDMEP--EVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLA 514 ++ E E+P W+Q ID G+++LV V L+ + +RP +L+ R E + Sbjct: 430 NSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRP---QLTRRAEAMKAV 486 Query: 515 KEKAEAEAAAAAAAVAAGFDPDDPDAI-VNLSGESEVDE-RAQYKANLETAKQ----WAK 568 +++A+A DA+ V LS + ++ + RA + E Q + Sbjct: 487 QQQAQAREEVE-------------DAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 533 Query: 569 NDPKLVASIIKSWVNNE 585 NDP++VA +I+ W+NN+ Sbjct: 534 NDPRVVALVIRQWINND 550 >ECs2677 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Ecs Escherichia coli O157:H7 Length = 552 Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust. Identities = 253/557 (45%), Positives = 367/557 (65%), Gaps = 37/557 (6%) Query: 38 RILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGT 97 +I LI+A +A +AVM + LW++ +YR LFSN +D+DGGAIV+ L QMN+PY++S+ Sbjct: 22 KIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASG 81 Query: 98 AILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSV 157 AI VP + VH+ RL+LA QGLPKGG VGFEL++ +K GISQF EQVN+QRALEGEL+R++ Sbjct: 82 AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTI 141 Query: 158 GSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPE 217 ++ V+ ARVHLA+PK S+FVR+Q+ P+ASV ++L PGR LD Q+SAIVHLV+S+V Sbjct: 142 ETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAG 201 Query: 218 LSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNV 277 L P VT+VDQ G+LL+ + + L+ QLKY D++ I +R+E+I++PIVGNGN+ Sbjct: 202 LPPGNVTLVDQGGHLLTQSNTSWR--DLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNI 259 Query: 278 RAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSASNGT-SGVPGALSNQPPA 336 A+ TA +DF+ EQ E Y+PN + AA+RS+Q +E+ + +G GVPGALSNQP Sbjct: 260 HAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAP 319 Query: 337 PATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGG 396 API P AN Q A+T + + P T +++ET NYEVD+T+R+T+ +G Sbjct: 320 ANNAPISTPP-ANQNNRQQQASTTSNSGPRST-----QRNETSNYEVDRTIRHTKMNVGD 373 Query: 397 VRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF 456 V+RL+VAVVVNYK D GK + PL+ + QI DL +EAMG+++ RGDSLNVVN+ F Sbjct: 374 VQRLSVAVVVNYKTLPD--GKPL--PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 Query: 457 STDMEP--EVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLA 514 ++ E E+P W+Q ID G+++LV V L+ + +RP +L+ R E + Sbjct: 430 NSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRP---QLTRRAEAMKAV 486 Query: 515 KEKAEAEAAAAAAAVAAGFDPDDPDAI-VNLSGESEVDE-RAQYKANLETAKQ----WAK 568 +++A+A DA+ V LS + ++ + RA + E Q + Sbjct: 487 QQQAQAREEVE-------------DAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 533 Query: 569 NDPKLVASIIKSWVNNE 585 NDP++VA +I+ W+NN+ Sbjct: 534 NDPRVVALVIRQWINND 550 >STM1969 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Sty Salmonella typhimurium LT2 Length = 560 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 249/559 (44%), Positives = 357/559 (63%), Gaps = 36/559 (6%) Query: 38 RILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGT 97 RI LI+A +A +A++ + LW++ +YR LFSN +D+DGGAIVA L QMN+PY++++G Sbjct: 25 RIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSG 84 Query: 98 AILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSV 157 AI VP + VH+ RL+LA QGLPKGG VGFEL++ +K GISQF EQVN+QRALEGELAR++ Sbjct: 85 AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTI 144 Query: 158 GSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPE 217 +L V++ARVHLA+PK S+FVR+Q+ P+ASV ++L PGR LD Q+SA+VHLV+S+V Sbjct: 145 ETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAG 204 Query: 218 LSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNV 277 L P VT+VDQ+G+LL+ + + L+ QLK+ D++ I +R+E+I++PIVGNGNV Sbjct: 205 LPPGNVTLVDQSGHLLTQSNTSGR--DLNDAQLKFANDVESRIQRRIEAILSPIVGNGNV 262 Query: 278 RAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSASNGT-SGVPGALSNQPPA 336 A+ TA +DF+ EQ E Y PN A +RS+Q + + G GVPGALSNQP Sbjct: 263 HAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAP 322 Query: 337 PATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSR---KDETINYEVDKTVRYTQQP 393 P API P Q TP + T + + R ++ET NYEVD+T+R+T+ Sbjct: 323 PNEAPIATPPT----NQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMN 378 Query: 394 MGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVN 453 +G + RL+VAVVVNYK D GK + PLT + QI DL +EAMG++ RGD+LNVVN Sbjct: 379 VGDIERLSVAVVVNYKTLAD--GKPL--PLTADQMKQIEDLTREAMGFSDKRGDTLNVVN 434 Query: 454 TQFST--DMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERE 511 + FS + E+P W+Q ID G+++LV V L+ + +RP +L+ R E Sbjct: 435 SPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRP---QLTRRVEEA 491 Query: 512 RLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDE-RAQYKANLETAKQ----W 566 + A+E+A+ A V LS + ++ + RA + E Q Sbjct: 492 KAAQEQAQVRQETEEAVE------------VRLSKDEQLQQRRANQRLGAEVMSQRIREM 539 Query: 567 AKNDPKLVASIIKSWVNNE 585 + NDP++VA +I+ W++N+ Sbjct: 540 SDNDPRVVALVIRQWMSND 558 >YPO1830 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Ype Yersinia pestis Length = 570 Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust. Identities = 234/542 (43%), Positives = 337/542 (62%), Gaps = 31/542 (5%) Query: 57 LWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQ 116 LW++ +YRVL+SN +DRDGG IV L Q+N+PY+++D G A+L+P VH+ RL+LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 117 GLPKGGNVGFELMENQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKAS 176 GLPKGG VGFEL++ +K GISQF EQ+N+QRALEGEL+R++G+L V RVHLA+PK S Sbjct: 106 GLPKGGAVGFELLDQEKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPS 165 Query: 177 VFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDT 236 +FVR+Q+ PTASV L+L PGR LD Q++AIV++V+SSV L P VT+VDQ G LL+ + Sbjct: 166 LFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQS 225 Query: 237 TKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEA 296 + L+ +QLK+ +++ +R+E+I+AP+VGNGNV A+ TA VDF+ EQ E Sbjct: 226 DSAGR--DLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEE 283 Query: 297 YKPNQTKDSAAVRSKQSSEANS-ASNGTSGVPGALSNQPPAPATAPIVNP-------AVA 348 YKPNQ + AVRS+Q S + GVPGALSNQPP API P A Sbjct: 284 YKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNA 343 Query: 349 NGAANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNY 408 A A A ++ NSR D+T N+EVD+T+R+TQQ G V+RL+VAVVVNY Sbjct: 344 APANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNY 403 Query: 409 KRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDMEPE---VP 465 T D GK + L++ + Q+ L +EAMG++ RGD+LNVVNT F+ + +P Sbjct: 404 --TSDKAGKPIA--LSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLP 459 Query: 466 LWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAA 525 W+Q D G+Y+L+ V L+ ++LRP+ LAK++ +AAA+ Sbjct: 460 FWQQQSFFDQLLNAGRYLLILLVAWILWRKLLRPM------------LAKKQVADKAAAS 507 Query: 526 AAAVAAGFDPDD--PDAIVNLSGESEVDERAQYKANLETAKQWAKNDPKLVASIIKSWVN 583 + + + L+ + +R + + ++ A DP++VA +I+ W++ Sbjct: 508 VNNIVQTAQAAETVKQSKEELALRKKNQQRVSAEVQAQRIRELADKDPRVVALVIRQWMS 567 Query: 584 NE 585 N+ Sbjct: 568 ND 569 >PA1101 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Pae Pseudomonas aeruginosa Length = 598 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 226/570 (39%), Positives = 337/570 (59%), Gaps = 37/570 (6%) Query: 37 KRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGG 96 ++I L++ AA++A+ + LWSQ+ +Y+ L+ + N D +V +L ++PYK Sbjct: 40 RQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNS 99 Query: 97 TAILVPENMVHDARLKLAAQGL-PKGGNVGFELMEN-QKLGISQFLEQVNFQRALEGELA 154 A+LV + + AR+K+A+ G+ P NVGFE+++ Q LG SQF+E N++R LEGELA Sbjct: 100 GALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELA 159 Query: 155 RSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASS 214 R+V SL +V+ ARVHLA+PK+SVFVRD +KP+ASV++ LYPGR L+P QV AIV+LVA+S Sbjct: 160 RTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPSQVMAIVNLVATS 219 Query: 215 VPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGN 274 VPEL VT+VDQ GNLLSD + ++ T+ Q + + M+ + +RV +I+ P++GN Sbjct: 220 VPELDKSQVTVVDQKGNLLSDQQELSE-LTMAGKQFDFTRRMEGLLTQRVHNILQPVLGN 278 Query: 275 GNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQ-SSEANSASNGTSGVPGALSNQ 333 G +AE +ADVDFS E SE Y P+Q A+RS+Q ++E S+G GVPGALSNQ Sbjct: 279 GRYKAEVSADVDFSAVESTSEMYNPDQ----PALRSEQRNNEERQNSSGPQGVPGALSNQ 334 Query: 334 PPAPATAPIVNPAVANGAANQTGAATP----NGALPTPTATG---------NSRKDETIN 380 PP PA+AP A A+ A+ P NG TG + R T N Sbjct: 335 PPGPASAP--QQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRN 392 Query: 381 YEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMD-NTGKIVMRPLTEAERNQITDLVKEAM 439 YE+D+++ YT+Q G +RRL+VAVV++ + +D TG++ +P + E + T LV++++ Sbjct: 393 YELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSV 452 Query: 440 GYNKDRGDSLNVVNTQFSTDMEPE---VPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRV 496 GY+ RGDS++V+N F+ E +P + QP D+ K+ VL +L L F V Sbjct: 453 GYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----VLGVLFILVLVFGV 508 Query: 497 LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEV---DER 553 LRP++ ++G + + LA A + G DD V++ G S + Sbjct: 509 LRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDR---VSIGGPSSILLPSPT 565 Query: 554 AQYKANLETAKQWAKNDPKLVASIIKSWVN 583 Y A L K DP VA ++K W+N Sbjct: 566 EGYDAQLNAIKNLVAQDPGRVAQVVKEWIN 595 >BU073 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Buc Buchnera sp. APS Length = 545 Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 159/435 (36%), Positives = 275/435 (63%), Gaps = 25/435 (5%) Query: 25 NGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIVASLQ 84 N + G+ ++ + +++++ AAA AV +W+ S EY+VL+++ ++ D G+I+ L Sbjct: 19 NFLSGFLKN--SRFLIILLTAAAITAVSISVWIKSP--EYQVLYNHLSNEDRGSIINELN 74 Query: 85 QMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQVN 144 +M +PY+++D ILVP++ V++ RL+LA LP+GG++GFEL++ +K GISQ+ EQ+N Sbjct: 75 EMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGSIGFELLDKEKFGISQYNEQIN 134 Query: 145 FQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQV 204 + RALEGELAR++ + SV+ AR+H+A K+S+F++D++K +AS++L L PGR L+ Q+ Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTGQI 194 Query: 205 SAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRV 264 +AI+HL++SS+ +L + +TIVDQ+G LL+ T+ + + ++ +Q KY ++++ R+ Sbjct: 195 NAIMHLISSSISDLPVENITIVDQSGKLLNQTS--VEYDQVNDSQFKYTEEIETRYRNRI 252 Query: 265 ESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEAN--SASNG 322 ++I+ P+VG GN+ A+ TA +DF+ E+ E Y PN + ++RS Q N SN Sbjct: 253 KNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSNI 312 Query: 323 TSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETINYE 382 P LSN N V + N +P + +D T+NYE Sbjct: 313 QEETPIPLSNS----------NNHVYFNNNIKNSKNLKNNYIPVDSKIN---RDNTVNYE 359 Query: 383 VDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMGYN 442 ++ +V +T+ +G ++RL+ AV+VN+ + D GK V PL+ + I L++EA+GY+ Sbjct: 360 LNHSVSHTKMNIGEIKRLSAAVIVNFSK--DKNGKFV--PLSTQKIKNIEHLIREAIGYS 415 Query: 443 KDRGDSLNVVNTQFS 457 K RGDS+++VN F+ Sbjct: 416 KARGDSVHLVNASFA 430 >HP0351 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein Hpy Helicobacter pylori 26695 Length = 567 Score = 233 bits (595), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 248/492 (50%), Gaps = 52/492 (10%) Query: 30 YARSPQGKRILLIIAAAATLAVMAGIWLWSQKVE------YRVLFSNFNDRDGGAIVASL 83 + + + ++I LI A A++ + L+ K + Y VLF + D I+ L Sbjct: 14 FIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHL 73 Query: 84 QQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQV 143 QQ +PYK S T IL+P++ V++ R+ LA+QG+PK VGFE+ + + G + F + + Sbjct: 74 QQNQIPYKVSKDDT-ILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNI 132 Query: 144 NFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQ 203 RA+EGEL+R++ SL + A VH+A+PK SVFV + P+ASV+L L P L P Q Sbjct: 133 KLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQ 192 Query: 204 VSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKR 263 + I +L+A++VP+L+ + V IV++NG + + L QL Y Q+ + + + Sbjct: 193 ILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENK 252 Query: 264 VESIIAPIVGNGN-VRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEAN---SA 319 + +I+APIVG N V A A+ DFS+ + E + PN VRS+Q+ E ++ Sbjct: 253 IVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKEGAS 307 Query: 320 SNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETI 379 GVPG +SN P P + N T Sbjct: 308 KKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTT------------------------ 343 Query: 380 NYEVDKTVRYTQQPMGGVRRLTVAVVVN--YKRTM-DNTGKIVMRPLTEAERNQITDLVK 436 NYEV KT+ + G + RL AVVV+ YK + D + PL++ +I LVK Sbjct: 344 NYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINALVK 403 Query: 437 EAMGYNKDRGDSLNVVNTQFSTDMEP--------EVPLWKQPGMIDLAKEIGKYVLVAAV 488 +A+GYN++RGD + V N +F+ M P E + K ++ + KY+LV V Sbjct: 404 QAIGYNQNRGDDVAVSNFEFNP-MAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 462 Query: 489 LLFLYFRVLRPI 500 L Y +V+ P Sbjct: 463 LFIFYKKVIVPF 474 >jhp0325 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein jHp Helicobacter pylori J99 Length = 567 Score = 231 bits (588), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 247/492 (50%), Gaps = 52/492 (10%) Query: 30 YARSPQGKRILLIIAAAATLAVMAGIWLWSQKVE------YRVLFSNFNDRDGGAIVASL 83 + + + ++I LI A A++ + L+ K + Y VLF + D I+ L Sbjct: 14 FIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHL 73 Query: 84 QQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFLEQV 143 QQ +PYK T ILVP++ V++ R+ LA+QG+PK VGFE+ + + G + F + + Sbjct: 74 QQNQIPYKVLKDDT-ILVPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNI 132 Query: 144 NFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLDPQQ 203 RA+EGEL+R++ SL + A VH+A+PK SVFV + P+ASV+L L P L P Q Sbjct: 133 KLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQ 192 Query: 204 VSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKR 263 + I +L+A++VP+L+ + V IV++NG + + L QL+Y Q+ + + + Sbjct: 193 ILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENK 252 Query: 264 VESIIAPIVGNGN-VRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEAN---SA 319 + +I+APIVG N V A A+ DFS+ + E + PN VRS+Q+ E + Sbjct: 253 IVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNV-----VRSEQNLEEKKEGAP 307 Query: 320 SNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETI 379 GVPG +SN P P + N T Sbjct: 308 KKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTT------------------------ 343 Query: 380 NYEVDKTVRYTQQPMGGVRRLTVAVVVN--YKRTM-DNTGKIVMRPLTEAERNQITDLVK 436 NYEV KT+ + G + RL AVVV+ YK + D + PL++ +I LVK Sbjct: 344 NYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALEDGANALEYEPLSDESLKKINALVK 403 Query: 437 EAMGYNKDRGDSLNVVNTQFSTDMEP--------EVPLWKQPGMIDLAKEIGKYVLVAAV 488 +A+GYN++RGD + V N +F+ M P E + K ++ + KY+LV V Sbjct: 404 QAIGYNQNRGDDVAVSNFEFNP-MAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 462 Query: 489 LLFLYFRVLRPI 500 L Y +V+ P Sbjct: 463 LFIFYKKVIVPF 474