BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0065.p (171 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0379 [N] COG1580 Flagellar basal body-associated protein Rso ... 101 7e-22 fliL [N] COG1580 Flagellar basal body-associated protein Eco Esc... 88 8e-18 ZfliL [N] COG1580 Flagellar basal body-associated protein EcZ Es... 88 8e-18 ECs2683 [N] COG1580 Flagellar basal body-associated protein Ecs ... 88 8e-18 VC2127 [N] COG1580 Flagellar basal body-associated protein Vch V... 86 4e-17 STM1975 [N] COG1580 Flagellar basal body-associated protein Sty ... 73 4e-13 jhp0745 [N] COG1580 Flagellar basal body-associated protein jHp ... 71 1e-12 HP0809 [N] COG1580 Flagellar basal body-associated protein Hpy H... 71 1e-12 YPO1824 [N] COG1580 Flagellar basal body-associated protein Ype ... 65 7e-11 PA1442 [N] COG1580 Flagellar basal body-associated protein Pae P... 64 2e-10 >RSp0379 [N] COG1580 Flagellar basal body-associated protein Rso Ralstonia solanacearum Length = 164 Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 3/133 (2%) Query: 38 IGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEPFVVNLQQESG-DQYLQVAMTLQV 96 +GGAAA+F +GG + K P FV +E VNLQ E G D+YLQ+A+T + Sbjct: 34 MGGAAAWFFLGGGSHA--AGPAAPPKPKEPVFVPMETLTVNLQPEEGNDRYLQIAITFKS 91 Query: 97 PDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGKGKGP 156 + E +K Y P++RSR+LM+LSSK +EL ++EGK +L EI++Q + + GK Sbjct: 92 YNKHAEEEIKSYTPELRSRVLMLLSSKAPAELYSNEGKAKLAKEIVEQCEQAYKAVGKES 151 Query: 157 QITDVFYTSFVIQ 169 + DV +T+FVIQ Sbjct: 152 PVVDVLFTNFVIQ 164 >fliL [N] COG1580 Flagellar basal body-associated protein Eco Escherichia coli K12 Length = 154 Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 15 DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74 D A +K SK+ L+I + + L +A + +D A+++ +P F ++ Sbjct: 3 DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61 Query: 75 FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134 F VNL D+ L + +TL++ D T L Y+P+VRSRLL++ S + A+ L T EGK Sbjct: 62 FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119 Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 + L EI L P +TDV YT+F+++ Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154 >ZfliL [N] COG1580 Flagellar basal body-associated protein EcZ Escherichia coli O157:H7 EDL933 Length = 154 Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 15 DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74 D A +K SK+ L+I + + L +A + +D A+++ +P F ++ Sbjct: 3 DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61 Query: 75 FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134 F VNL D+ L + +TL++ D T L Y+P+VRSRLL++ S + A+ L T EGK Sbjct: 62 FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119 Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 + L EI L P +TDV YT+F+++ Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154 >ECs2683 [N] COG1580 Flagellar basal body-associated protein Ecs Escherichia coli O157:H7 Length = 154 Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 15 DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74 D A +K SK+ L+I + + L +A + +D A+++ +P F ++ Sbjct: 3 DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61 Query: 75 FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134 F VNL D+ L + +TL++ D T L Y+P+VRSRLL++ S + A+ L T EGK Sbjct: 62 FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119 Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 + L EI L P +TDV YT+F+++ Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154 >VC2127 [N] COG1580 Flagellar basal body-associated protein Vch Vibrio cholerae Length = 167 Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 20 KSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAE-AKAPT----FVVI-E 73 K KK+L II+ AV++L GG AAFFMMG G + AE+K E APT +V I + Sbjct: 12 KGKKKLLIIIIAAVVLLAGGGGAAFFMMGSGGDEAAADAEQKTEQVAAPTDPVSYVNIAQ 71 Query: 74 PFVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEG 133 PFV N+ ++ D+ +Q+ + L V + + + P V S LL +S +L T G Sbjct: 72 PFVFNVTGDAKDRLVQIKVQLMVRGSENENLARYHSPLVESSLLATFASATVEQLRTPNG 131 Query: 134 KRRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 + L D+ D + + P I V +T FV+Q Sbjct: 132 RIELRDKATDDIKAALNQAVGKPVIEKVLFTDFVMQ 167 >STM1975 [N] COG1580 Flagellar basal body-associated protein Sty Salmonella typhimurium LT2 Length = 155 Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 15 DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74 D+A K SK+ ++I + ++ L A + + + + E A AP F ++ Sbjct: 3 DSAINKKSKRSIWIPLLVLITLAACATAGYSYWRMQQQPTTNAKAEPAPPPAPVFFALDT 62 Query: 75 FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134 F VNL D+ L + +TL++ D T L Y+P+VRSRLL++ S + A+EL T GK Sbjct: 63 FTVNLG--DADRVLYIGVTLRLKDEATRARLNEYLPEVRSRLLLLFSRQNAAELSTEAGK 120 Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 ++L I + L P +TDV YT+F+++ Sbjct: 121 QKLIAAIKETLAAPLVAGQPKQVVTDVLYTAFILR 155 >jhp0745 [N] COG1580 Flagellar basal body-associated protein jHp Helicobacter pylori J99 Length = 183 Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 28/176 (15%) Query: 18 PAKSSKKMLFIIVGAVLVLVIGGAAAF-FMMGGKGKKGEDHAEEKAEAKA---------- 66 P K SK +LF+I+G+VLV+++ +MG K + E+ ++ E +A Sbjct: 12 PQKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEA 71 Query: 67 -------------PTFVVIEPFVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVR 113 P + + PF VNL ++G +YL+ +++L++ + + +K+ ++ Sbjct: 72 KEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIK 131 Query: 114 SRLLMVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 ++ +LSSK E++T++GK +L DEI L F G I +VF+T F+IQ Sbjct: 132 DTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLN-SFLIDGF---IKNVFFTDFIIQ 183 >HP0809 [N] COG1580 Flagellar basal body-associated protein Hpy Helicobacter pylori 26695 Length = 183 Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 28/176 (15%) Query: 18 PAKSSKKMLFIIVGAVLVLVIGGAAAF-FMMGGKGKKGEDHAEEKAEAKA---------- 66 P K SK +LF+I+G+VLV+++ +MG K + E+ ++ E +A Sbjct: 12 PPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEA 71 Query: 67 -------------PTFVVIEPFVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVR 113 P + + PF VNL ++G +YL+ +++L++ + + +K+ ++ Sbjct: 72 KEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIK 131 Query: 114 SRLLMVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169 ++ +LSSK E++T++GK +L DEI L F G I +VF+T F+IQ Sbjct: 132 DTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLN-SFLIDG---FIKNVFFTDFIIQ 183 >YPO1824 [N] COG1580 Flagellar basal body-associated protein Ype Yersinia pestis Length = 156 Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 8/155 (5%) Query: 18 PAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEPFVV 77 PAK + I++ V + G + + K K + A P F+ +E F V Sbjct: 7 PAKRKSSIWLILLVLVAIAASAGGGYSWWLLHKSKP----TNTQIVAAIPVFMPLETFTV 62 Query: 78 NL--QQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGKR 135 NL + D+ L + +TL++PD T L Y+P+VRSRLL++LS + A L EGK+ Sbjct: 63 NLITPDNNLDRVLYIGLTLRLPDDTTRTKLNDYLPEVRSRLLLLLSRQSADSLSNEEGKQ 122 Query: 136 RLTDEIIDQLGEPFSGKGKGPQ-ITDVFYTSFVIQ 169 RL ++I + L P KG+ Q I+DV +T+F+++ Sbjct: 123 RLVNDIKNILSPPMV-KGQPNQVISDVLFTAFILR 156 >PA1442 [N] COG1580 Flagellar basal body-associated protein Pae Pseudomonas aeruginosa Length = 173 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 36 LVIGGAAAFFMMGGKGKKGEDHAEEKAE-AKAPT-FVVIEP-FVVNLQQESGDQYLQVAM 92 L +GG F K +K E+ A E A+ K P + ++ P FVVN Q +Y+QV + Sbjct: 37 LSVGGTWFFLSKSLKAEKTEEVASEAAKPGKQPALYEILAPAFVVNFNQNGRQRYMQVGV 96 Query: 93 TLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGK 152 L D +AL+ +MP VR++L+M+ SS+ L+T GK L + L E + Sbjct: 97 ALMGRDKAQMDALREHMPLVRNKLVMLFSSQSFDSLVTPVGKEMLRQQATAGLQELAKKE 156 Query: 153 GKGPQITDVFYTSFVIQ 169 I V +T+FV+Q Sbjct: 157 TGQLAIEQVLFTNFVLQ 173