BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0061.p (265 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value fliP [NU] COG1338 Flagellar biosynthesis pathway, component FliP... 332 7e-91 ZfliP [NU] COG1338 Flagellar biosynthesis pathway, component Fli... 332 7e-91 ECs2687 [NU] COG1338 Flagellar biosynthesis pathway, component F... 332 7e-91 STM1979 [NU] COG1338 Flagellar biosynthesis pathway, component F... 328 6e-90 YPO1820 [NU] COG1338 Flagellar biosynthesis pathway, component F... 327 2e-89 RSp0375 [NU] COG1338 Flagellar biosynthesis pathway, component F... 315 8e-86 BU082_2 [NU] COG1338 Flagellar biosynthesis pathway, component F... 288 8e-78 PA1446 [NU] COG1338 Flagellar biosynthesis pathway, component Fl... 272 4e-73 VC2123 [NU] COG1338 Flagellar biosynthesis pathway, component Fl... 262 7e-70 BS_fliP [NU] COG1338 Flagellar biosynthesis pathway, component F... 244 1e-64 >fliP [NU] COG1338 Flagellar biosynthesis pathway, component FliP Eco Escherichia coli K12 Length = 245 Score = 332 bits (850), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 193/222 (86%) Query: 44 IPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQS 103 +P + S P PGGG ++SLP+QT++ +TSL+F+PA LLMMT FTRI+IV LLR ALGT S Sbjct: 23 LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPS 82 Query: 104 TPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQT 163 PP QVL+GL+LFLTFF+MSPV D+IY DAYQPF+E KI M EAL+KGAQPL+EFML+QT Sbjct: 83 APPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQT 142 Query: 164 RESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 223 RE+DL L+ +L+ LQGPE VP+R+L+PA+VTSELKTAFQIGF IF+PFLIID+V+AS Sbjct: 143 READLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIAS 202 Query: 224 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 265 +LM++GMMM+ PA ++LPFKLMLFVLVDGWQLL+GSLAQSFY Sbjct: 203 VLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244 >ZfliP [NU] COG1338 Flagellar biosynthesis pathway, component FliP EcZ Escherichia coli O157:H7 EDL933 Length = 245 Score = 332 bits (850), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 193/222 (86%) Query: 44 IPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQS 103 +P + S P PGGG ++SLP+QT++ +TSL+F+PA LLMMT FTRI+IV LLR ALGT S Sbjct: 23 LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPS 82 Query: 104 TPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQT 163 PP QVL+GL+LFLTFF+MSPV D+IY DAYQPF+E KI M EAL+KGAQPL+EFML+QT Sbjct: 83 APPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQT 142 Query: 164 RESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 223 RE+DL L+ +L+ LQGPE VP+R+L+PA+VTSELKTAFQIGF IF+PFLIID+V+AS Sbjct: 143 READLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIAS 202 Query: 224 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 265 +LM++GMMM+ PA ++LPFKLMLFVLVDGWQLL+GSLAQSFY Sbjct: 203 VLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244 >ECs2687 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Ecs Escherichia coli O157:H7 Length = 245 Score = 332 bits (850), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 193/222 (86%) Query: 44 IPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQS 103 +P + S P PGGG ++SLP+QT++ +TSL+F+PA LLMMT FTRI+IV LLR ALGT S Sbjct: 23 LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPS 82 Query: 104 TPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQT 163 PP QVL+GL+LFLTFF+MSPV D+IY DAYQPF+E KI M EAL+KGAQPL+EFML+QT Sbjct: 83 APPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQT 142 Query: 164 RESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 223 RE+DL L+ +L+ LQGPE VP+R+L+PA+VTSELKTAFQIGF IF+PFLIID+V+AS Sbjct: 143 READLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIAS 202 Query: 224 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 265 +LM++GMMM+ PA ++LPFKLMLFVLVDGWQLL+GSLAQSFY Sbjct: 203 VLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244 >STM1979 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Sty Salmonella typhimurium LT2 Length = 245 Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 161/229 (70%), Positives = 196/229 (85%), Gaps = 2/229 (0%) Query: 37 AASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLR 96 AA+AQ +P L S P GGG ++SL +QT++ +TSL+FLPA LLMMT FTRI+IV LLR Sbjct: 18 AAAAQ--LPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLR 75 Query: 97 QALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLK 156 ALGT S PP QVL+GL+LFLTFF+MSPV D+IY DAYQPF+E KI M EALDKGAQPL+ Sbjct: 76 NALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLR 135 Query: 157 EFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLI 216 FML+QTRE+DLAL+ +L+ LQGPE VP+R+L+PA+VTSELKTAFQIGF IF+PFLI Sbjct: 136 AFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLI 195 Query: 217 IDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 265 ID+V+AS+LM++GMMM+ PA ++LPFKLMLFVLVDGWQLL+GSLAQSFY Sbjct: 196 IDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSLAQSFY 244 >YPO1820 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Ype Yersinia pestis Length = 246 Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/237 (67%), Positives = 201/237 (84%) Query: 29 LALLCLPLAASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRI 88 L LL L + S +P + S P GG ++SLP+QT++ +T+LSFLPAALLMMT FTRI Sbjct: 9 LGLLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRI 68 Query: 89 VIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEAL 148 +IVL LLR A+GT S PP QV++GL+LFLTFF+MSPVFD++Y +AY PF+++KI M AL Sbjct: 69 IIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVAL 128 Query: 149 DKGAQPLKEFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGF 208 DKG+QPL+EFML+QTRESDLALY +L+ P L+GPE VP+R+L+PA+VTSELKTAFQIGF Sbjct: 129 DKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEMVPMRILLPAYVTSELKTAFQIGF 188 Query: 209 AIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 265 +F+PFLIID+VVAS+LM++GMMM+ PA +SLPFKLMLFVLVDGWQLL+GSLAQSFY Sbjct: 189 TVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245 >RSp0375 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Rso Ralstonia solanacearum Length = 249 Score = 315 bits (806), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 154/227 (67%), Positives = 189/227 (83%), Gaps = 3/227 (1%) Query: 38 ASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQ 97 A AQ G+P L GG +YSLP+QT++ LTSL FLPA LLMM+ FTRI+IVLSLLR Sbjct: 24 AQAQPGLPLLTGT---AGGQSYSLPVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRH 80 Query: 98 ALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKE 157 ALGTQ+TPP QVL+GL+LFLTFFVMSPV D++YTDAY P ++KI + +ALD A PL++ Sbjct: 81 ALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQ 140 Query: 158 FMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLII 217 FMLKQTRE DLAL+ K+ P + P+ VP+R L+PAFVTSELKTAFQIGFAIF+PFL+I Sbjct: 141 FMLKQTREPDLALFAKMGNLPPIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFLVI 200 Query: 218 DMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 264 D+VVA++LMSMGMMM++P++ SLPFK+MLFVLVDGW LL+GSLAQSF Sbjct: 201 DIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >BU082_2 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Buc Buchnera sp. APS Length = 246 Score = 288 bits (737), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 141/231 (61%), Positives = 179/231 (77%) Query: 34 LPLAASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLS 93 L L SA +P L S G +S+P+QT++ LTSL+FLPA LLMMT FTRIVIV Sbjct: 14 LSLCPSAHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFG 73 Query: 94 LLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQ 153 LLR ALGT PP Q+L+GL+LFLTFF+MSP F++IY DAY PF++ K+ M +A+ KG+ Sbjct: 74 LLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSM 133 Query: 154 PLKEFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLP 213 PLK+FML Q R DL L+ KL+ + + D+P+R+L+P+F+TSELKTAFQIGF IF+P Sbjct: 134 PLKKFMLNQIRTPDLELFSKLAHISSYKNKNDIPMRILLPSFITSELKTAFQIGFTIFIP 193 Query: 214 FLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 264 FLIID+VVAS+LM++GMMM+ P+ +SLPFKLMLFVLVDGWQLLI SLA SF Sbjct: 194 FLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 244 >PA1446 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Pae Pseudomonas aeruginosa Length = 255 Score = 272 bits (696), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 135/210 (64%), Positives = 169/210 (80%) Query: 55 GGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLS 114 G YS+ +Q +L++T+LSF+PA +++MT FTRI+IV S+LRQALG QSTP QVLVGL+ Sbjct: 43 GQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLA 102 Query: 115 LFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTRESDLALYVKL 174 LFLT FVM+PVFD+I + A QP+ +I EAL K PLK FML QTR SDL L+V+L Sbjct: 103 LFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRL 162 Query: 175 SRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVASILMSMGMMMMS 234 S+ + PE PL +LVPAFVTSELKTAFQIGF IF+PFLIID+VV+S+LM+MGMMM+S Sbjct: 163 SKRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLS 222 Query: 235 PALVSLPFKLMLFVLVDGWQLLIGSLAQSF 264 P ++SLPFK+MLFVLVDGW L+IG+LA SF Sbjct: 223 PLIISLPFKIMLFVLVDGWALIIGTLAGSF 252 >VC2123 [NU] COG1338 Flagellar biosynthesis pathway, component FliP Vch Vibrio cholerae Length = 299 Score = 262 bits (669), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 127/221 (57%), Positives = 169/221 (76%), Gaps = 1/221 (0%) Query: 44 IPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQS 103 IPA G +YS+ +Q + L+T L FLPA +++MT FTRIV+V+S+LRQA+G Q Sbjct: 78 IPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQ 137 Query: 104 TPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQT 163 TP QV++G++LFLTFF+M+PVF++I A QP+ +I +A D +PLK FMLKQT Sbjct: 138 TPSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQT 197 Query: 164 RESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 223 R +DL +V++S G + PE V + +L+PAF+TSELKTAFQIGF +FLPFLIID+VVAS Sbjct: 198 RVNDLETFVEMS-GAQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 256 Query: 224 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 264 +LM+MGMMM+SP +VSLPFKLMLFVLVDGW L++ +LA SF Sbjct: 257 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >BS_fliP [NU] COG1338 Flagellar biosynthesis pathway, component FliP Bsu Bacillus subtilis Length = 221 Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/207 (58%), Positives = 156/207 (75%) Query: 58 NYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFL 117 N S ++ +LLLT S P L++MTCFTRIVIVLS +R +L TQS PP QVL+GL+LFL Sbjct: 15 NVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFL 74 Query: 118 TFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTRESDLALYVKLSRG 177 TFF+M+P F I +A P +NKI + EA K +P+KEFM K TR+ DLAL++ ++ Sbjct: 75 TFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKM 134 Query: 178 PALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPAL 237 + +D+PL +VPAF SELKTAFQIGF IF+PFLIIDMVVAS+LMSMGMMM+ P + Sbjct: 135 DKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVM 194 Query: 238 VSLPFKLMLFVLVDGWQLLIGSLAQSF 264 +SLPFK++LFVLVDGW L++ SL QSF Sbjct: 195 ISLPFKILLFVLVDGWYLIVKSLLQSF 221