BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0055.p (377 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value flgL [N] COG1344 Flagellin and related hook-associated proteins ... 141 3e-33 ZflgL [N] COG1344 Flagellin and related hook-associated proteins... 140 4e-33 ECs1461 [N] COG1344 Flagellin and related hook-associated protei... 140 4e-33 STM1184 [N] COG1344 Flagellin and related hook-associated protei... 140 7e-33 YPO1809 [N] COG1344 Flagellin and related hook-associated protei... 127 3e-29 PA1087 [N] COG1344 Flagellin and related hook-associated protein... 104 3e-22 RSp0352 [N] COG1344 Flagellin and related hook-associated protei... 103 7e-22 YPO0733 [N] COG1344 Flagellin and related hook-associated protei... 83 1e-15 BS_flgL [N] COG1344 Flagellin and related hook-associated protei... 72 2e-12 VC2190 [N] COG1344 Flagellin and related hook-associated protein... 71 5e-12 >flgL [N] COG1344 Flagellin and related hook-associated proteins Eco Escherichia coli K12 Length = 317 Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 114/380 (30%), Positives = 182/380 (47%), Gaps = 66/380 (17%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR STQM+YQ + +T+ Q++++K +Q++ +RV+ PSDDP+AA++A+ + Q N Sbjct: 1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY R A +S + L +T + + ++ A N + S+ +R ++A++I+G + Sbjct: 61 QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISASGQ 180 +L AN DG G Y+FAG+K+ T PF+ + Y G ++ QVD++R M I +G Sbjct: 121 LLNLANTTDGNGRYIFAGYKTETAPFSEEKGK---YVGGAESIKQQVDASRSMVIGHTGD 177 Query: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240 IF D +N P GS A +T+L Sbjct: 178 KIF-----------------------------DSITSNAVAEPDGS------ASETNL-- 200 Query: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASF---NTQIDSLL 297 + + +A AALK TPV S+A A+ N + + L Sbjct: 201 ----------FAMLDSAIAALK----------TPVADSEADKETAAAALDKTNRGLKNSL 240 Query: 298 SNVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYL 357 +NV T +A +G + NEL++LD+ G TQ +++L+ D N IS Y + QT L Sbjct: 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLV---DVDWNATISSYIMQQTAL 297 Query: 358 SAAQKVFVTTSGLSLLNYLK 377 A+ K F GLSL K Sbjct: 298 QASYKAFTDMQGLSLFQLSK 317 >ZflgL [N] COG1344 Flagellin and related hook-associated proteins EcZ Escherichia coli O157:H7 EDL933 Length = 317 Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 183/377 (48%), Gaps = 68/377 (18%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR STQM+YQ + +T+ Q++++K +Q++ +RV+ PSDDP+AA++A+ + Q N Sbjct: 1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY R A +S + L +T + + ++ A N + S+ +R ++A++I+G + Sbjct: 61 QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFT-LDGTGGVVYNGDQGAMSLQVDSTRQMDISASG 179 +L AN DG G Y+FAG+K+ T PF+ ++G Y G ++ QVD++R M I +G Sbjct: 121 LLNLANTTDGNGRYIFAGYKTETAPFSEVNGD----YVGGTESIKQQVDASRSMVIGHTG 176 Query: 180 QAIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLA 239 IF D +N P GS A +T+L Sbjct: 177 DKIF-----------------------------DSITSNAVAEPDGS------ASETNL- 200 Query: 240 QLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASF---NTQIDSL 296 + + +A AALK TPV S+A A+ N + + Sbjct: 201 -----------FAMLDSAIAALK----------TPVADSEADKETAAAALDKTNRGLKNS 239 Query: 297 LSNVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTY 356 L+NV T +A +G + NEL++LD+ G TQ +++L+ D N IS Y + QT Sbjct: 240 LNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLV---DVDWNATISSYIMQQTA 296 Query: 357 LSAAQKVFVTTSGLSLL 373 L A+ K F GLSL Sbjct: 297 LQASYKAFTDMQGLSLF 313 >ECs1461 [N] COG1344 Flagellin and related hook-associated proteins Ecs Escherichia coli O157:H7 Length = 317 Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 183/377 (48%), Gaps = 68/377 (18%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR STQM+YQ + +T+ Q++++K +Q++ +RV+ PSDDP+AA++A+ + Q N Sbjct: 1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY R A +S + L +T + + ++ A N + S+ +R ++A++I+G + Sbjct: 61 QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFT-LDGTGGVVYNGDQGAMSLQVDSTRQMDISASG 179 +L AN DG G Y+FAG+K+ T PF+ ++G Y G ++ QVD++R M I +G Sbjct: 121 LLNLANTTDGNGRYIFAGYKTETAPFSEVNGD----YVGGTESIKQQVDASRSMVIGHTG 176 Query: 180 QAIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLA 239 IF D +N P GS A +T+L Sbjct: 177 DKIF-----------------------------DSITSNAVAEPDGS------ASETNL- 200 Query: 240 QLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASF---NTQIDSL 296 + + +A AALK TPV S+A A+ N + + Sbjct: 201 -----------FAMLDSAIAALK----------TPVADSEADKETAAAALDKTNRGLKNS 239 Query: 297 LSNVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTY 356 L+NV T +A +G + NEL++LD+ G TQ +++L+ D N IS Y + QT Sbjct: 240 LNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLV---DVDWNATISSYIMQQTA 296 Query: 357 LSAAQKVFVTTSGLSLL 373 L A+ K F GLSL Sbjct: 297 LQASYKAFTDMQGLSLF 313 >STM1184 [N] COG1344 Flagellin and related hook-associated proteins Sty Salmonella typhimurium LT2 Length = 317 Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 111/376 (29%), Positives = 183/376 (48%), Gaps = 66/376 (17%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MRISTQM+Y+ + + +T+ Q++++KL +Q++ +RV PSDDP+AA++A+ + Q N Sbjct: 1 MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNS 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY R A +S + L +T + + ++ AGN + S+ +R ++A++++G + Sbjct: 61 QYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISASGQ 180 ++ AN+ DG G Y+FAG+K+ PF TGG Y+G + +++ QVDS R M I +G Sbjct: 121 LMNLANSTDGNGRYIFAGYKTEAAPFD-QATGG--YHGGEKSVTQQVDSARTMVIGHTGA 177 Query: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240 IF N I +VP + + ++ N FV Sbjct: 178 QIF------------NSITSNAVPEPDGS----DSEKNLFVM------------------ 203 Query: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASF---NTQIDSLL 297 + TA AALK TPV G+ + A+ N + + L Sbjct: 204 -------------LDTAIAALK----------TPVEGNNVEKEKAAAAIDKTNRGLKNSL 240 Query: 298 SNVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYL 357 +NV T +A +G + +EL LD+ G ++NL+ D N +IS Y + Q L Sbjct: 241 NNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLV---DVDWNSVISSYVMQQAAL 297 Query: 358 SAAQKVFVTTSGLSLL 373 A+ K F G+SL Sbjct: 298 QASYKTFTDMQGMSLF 313 >YPO1809 [N] COG1344 Flagellin and related hook-associated proteins Ype Yersinia pestis Length = 326 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 113/376 (30%), Positives = 174/376 (46%), Gaps = 57/376 (15%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR+ST M+YQ + +T+ QS +++ QQ++ +RV+ PSDDP+AA++A+ + Q N Sbjct: 1 MRLSTSMLYQQNMQGITNAQSLWMQTGQQLSTGKRVVNPSDDPMAASQAVMVSQAESENS 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY R A + S L T+ + ++S VI+A N + S+ +R + A++++G + Sbjct: 61 QYTLARSFARQSSSLETTVLAQTTSTIQSIQSLVISAKNDTLSDDDRASYATQLQGLKDQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISASGQ 180 +L AN DG G Y+FAGFKS PF + TG V Y G A+ +VD+ R M +G Sbjct: 121 LLNQANTTDGNGRYIFAGFKSDKPPFAVSDTGEVTYVGGDVAIEQKVDTNRSMTAGHTGA 180 Query: 181 AIFQ---GNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTS 237 ++F GN + P + N A P+AA K Sbjct: 181 SVFMALTGNAK---------------PEPDDVNGA-----------------PVAAEK-- 206 Query: 238 LAQLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLL 297 N D ++ T L+ SD A +QA L + L + ++ Sbjct: 207 ----NIFDTIDTVLNSLKT---PLQGASDEVKAQ------AQADLDKGLRGLSNSLN--- 250 Query: 298 SNVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYL 357 NV + +A IG + ELDNLD+ G Q +++L D IS Y + Q L Sbjct: 251 -NVLSVQAEIGVQLQELDNLDSLGGDRTLINKQQLSDL---QDVDWTSAISSYVMQQAAL 306 Query: 358 SAAQKVFVTTSGLSLL 373 A+ F GLSL Sbjct: 307 QASYTTFTNMQGLSLF 322 >PA1087 [N] COG1344 Flagellin and related hook-associated proteins Pae Pseudomonas aeruginosa Length = 439 Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 6/187 (3%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQ---QVTAQQRVLLPSDDPVAAARALDMQQTAD 57 MRIST Q+ NN ++ + + L++ +++A +R+L P+DDPV A R L + Q Sbjct: 1 MRIST---IQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQA 57 Query: 58 LNEQYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGN 117 LN QYK+ A ++L + L S+ ++ +++ + AGN +++ +A+E+ Sbjct: 58 LNSQYKSGITAAKNSLQQEETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQR 117 Query: 118 LAEVLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISA 177 E+L N++D G YLF+G + TQPF + G YNGD+G +Q+ S+ + IS Sbjct: 118 EDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDEGQREVQIASSTFIAISD 177 Query: 178 SGQAIFQ 184 +G+ +F+ Sbjct: 178 NGKILFE 184 >RSp0352 [N] COG1344 Flagellin and related hook-associated proteins Rso Ralstonia solanacearum Length = 316 Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 16/248 (6%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR+ST + +S + + + QS +KL QQ++ + D+P A + L +QQ+ D N+ Sbjct: 1 MRVSTAQFFSASTSSMQTTQSNLVKLQQQISTGIALNAAGDNPAAMGQVLQLQQSQDTND 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 Q++ NR N+ L++V L + L + K + I A ++++R+ + +++K + Sbjct: 61 QFQVNRDATNARLNTVSSALSDVIATLQQGKQSTIAANTTLLTDSQRVGILAQVKQQYQQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISASGQ 180 +L AN +D G LFAG TT PF G G V Y G ++QV M S SG Sbjct: 121 LLSTANQRDASGVALFAGANGTTAPFVSSG-GSVQYVGSGQPPTVQVAQDISMPNSVSGD 179 Query: 181 AIF----------QGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTP 230 ++F Q +FKT N I LS P+T + AD TA V A L Sbjct: 180 SVFVRVPNSDVSNPNANQSVFKTYENLITALSKPITTS---ADVTAIQTAVQTAQGNLD- 235 Query: 231 IAAYKTSL 238 +AY+ +L Sbjct: 236 -SAYQVAL 242 >YPO0733 [N] COG1344 Flagellin and related hook-associated proteins Ype Yersinia pestis Length = 307 Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 84/149 (56%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR+ST + + N +T + K+++Q+ QQR+ LPS+DP+A+ R L + + + Sbjct: 1 MRVSTPTMSSTMNRFITQHNEKLEKINKQMMTQQRITLPSEDPIASTRLLQINREQANIK 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QY +N +++L++ G++ ++ L +KS++++ SN + +A E+ L Sbjct: 61 QYSSNISGLSNSLTNQTGHVSAINKQLVSIKSSLVSINGNIKSNKDIAGVADELNYMLES 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLD 149 V+ NA++ +G YLFAG S QP T D Sbjct: 121 VVAGLNAKNSEGRYLFAGTASNKQPITFD 149 >BS_flgL [N] COG1344 Flagellin and related hook-associated proteins Bsu Bacillus subtilis Length = 298 Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 5/204 (2%) Query: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 MR++ MI Q+S + S S+ KL Q+++ +++ SDDPV A ++L + Sbjct: 1 MRVTQGMIQQNSLRYIGSSYSKLDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQ 60 Query: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 QYK+N A + L + + N+ ++L+K++ + A N + ER + E+K + Sbjct: 61 QYKSNASQAFTWLENTETNITEGIDILSKVRELAVEAQNDTNGEPERQAIGVEVKQLKEQ 120 Query: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMDISASGQ 180 +L AN Q G Y+F G S P T +G G + D + + + + + +++ + Sbjct: 121 LLNIANTQ-VNGRYIFNGTNSDKPPVTDNGDGTYTIS-DTADVVVNISNNMSLKVNSDPK 178 Query: 181 AIFQG---NGQDIFKTMNNFINVL 201 + F G +GQ++F+ +++F L Sbjct: 179 SAFGGTSESGQNVFEMLDSFEKAL 202 >VC2190 [N] COG1344 Flagellin and related hook-associated proteins Vch Vibrio cholerae Length = 397 Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 22/202 (10%) Query: 2 RISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNEQ 61 RIS+ YQ+ ND+ +S+ Q+ + +++L SD+P+A ++ Q + Q Sbjct: 4 RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63 Query: 62 YKTNRQNANSALSSVQGNLESMTNMLTKL-------KSNVITAGNASYSNAERINMASEI 114 Y A+ V+ LE +++ K V+ N S S +R+ A + Sbjct: 64 YL-------DAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVL 116 Query: 115 KGNLAEVLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRQMD 174 + + AN QD GNY+FAG K QPF D G V Y GD D R+M Sbjct: 117 QEMANNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGD--------DYQRKMK 168 Query: 175 ISASGQAIFQGNGQDIFKTMNN 196 IS S + F G +F + N Sbjct: 169 ISNSLEIPFNNPGSKVFMEIPN 190