BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0050.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1179 [N] COG4786 Flagellar basal body rod protein Sty Salmone... 399 e-111 flgG [N] COG4786 Flagellar basal body rod protein Eco Escherichi... 397 e-110 ZflgG [N] COG4786 Flagellar basal body rod protein EcZ Escherich... 397 e-110 ECs1456 [N] COG4786 Flagellar basal body rod protein Ecs Escheri... 397 e-110 RSp0347 [N] COG4786 Flagellar basal body rod protein Rso Ralston... 389 e-108 BU342 [N] COG4786 Flagellar basal body rod protein Buc Buchnera ... 359 3e-99 YPO1804 [N] COG4786 Flagellar basal body rod protein Ype Yersini... 351 1e-96 PA1082 [N] COG4786 Flagellar basal body rod protein Pae Pseudomo... 314 1e-85 aq_834 [N] COG4786 Flagellar basal body rod protein Aae Aquifex ... 300 3e-81 VC2195 [N] COG4786 Flagellar basal body rod protein Vch Vibrio c... 288 7e-78 >STM1179 [N] COG4786 Flagellar basal body rod protein Sty Salmonella typhimurium LT2 Length = 260 Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/260 (72%), Positives = 223/260 (85%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDGT+AYTRDG+F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q D GQLVT+ G+ +QP IT+P N +T+GRDGVVS+ Q G A Q+G + + TF+N Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 GLES GENLY+ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY Sbjct: 181 DTGLESIGENLYIETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSKA++T+DQML KL+QL Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260 >flgG [N] COG4786 Flagellar basal body rod protein Eco Escherichia coli K12 Length = 260 Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/260 (72%), Positives = 222/260 (85%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q D GQLVT+ G+ +QP IT+P N +T+GRDGVVS+ Q G A Q+G + + TF+N Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSKA++T+DQML KL+QL Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260 >ZflgG [N] COG4786 Flagellar basal body rod protein EcZ Escherichia coli O157:H7 EDL933 Length = 260 Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/260 (72%), Positives = 222/260 (85%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q D GQLVT+ G+ +QP IT+P N +T+GRDGVVS+ Q G A Q+G + + TF+N Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSKA++T+DQML KL+QL Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260 >ECs1456 [N] COG4786 Flagellar basal body rod protein Ecs Escherichia coli O157:H7 Length = 260 Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/260 (72%), Positives = 222/260 (85%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q D GQLVT+ G+ +QP IT+P N +T+GRDGVVS+ Q G A Q+G + + TF+N Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSKA++T+DQML KL+QL Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260 >RSp0347 [N] COG4786 Flagellar basal body rod protein Rso Ralstonia solanacearum Length = 260 Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/260 (73%), Positives = 217/260 (83%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MIRSLWISKTG+DAQQ+QLDVISNNLANV+T GFKRSRAVFEDLLYQ VR+PGAQSSQQT Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSG+QIGTG R VATER+ TQGN+ QT N D+AI GNGFFQ+ +PDGT AYTRDG+F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q ++QGQLVTSSGY +QP ITVP N T LTV +DG V++ G+ +TQ+GT Q+A FIN Sbjct: 121 QINAQGQLVTSSGYPVQPAITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFIN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 PAGL S GENLY ET ASG N PG+NG G L Q YVETSNVNVVEE+VNMIQTQRAY Sbjct: 181 PAGLRSMGENLYAETEASGTANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMIQTQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSKA+ TSDQML KL+QL Sbjct: 241 EINSKAVQTSDQMLEKLAQL 260 >BU342 [N] COG4786 Flagellar basal body rod protein Buc Buchnera sp. APS Length = 260 Score = 359 bits (921), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 174/260 (66%), Positives = 210/260 (80%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 MI SLWISKTGLDAQQ +++ISNNLANVSTNGFKRSRAVFEDL+YQT+R+ G SS +T Sbjct: 1 MIPSLWISKTGLDAQQINMNIISNNLANVSTNGFKRSRAVFEDLMYQTIREAGTNSSLET 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 LPSGLQ+GTGVRPV+TERI TQGN+++T+ KD+AI G+GFFQ+ LPDG AYTRDG+F Sbjct: 61 TLPSGLQLGTGVRPVSTERIHTQGNLSKTDASKDVAINGSGFFQVQLPDGNIAYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 Q D GQLVT+SG+ + P I +P N+T + + RDGV+S++ G T +G + + F+N Sbjct: 121 QLDQNGQLVTNSGFPIIPEINIPSNSTNINIARDGVISVVVQGQTQPVLLGQLNLINFVN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 +GLES GENLY ET ASG+P PG NG G L+QGYVETSNVNV EELVNMIQTQRAY Sbjct: 181 NSGLESLGENLYQETQASGSPIETTPGLNGTGVLYQGYVETSNVNVAEELVNMIQTQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 EINSK+I+TSDQML KLSQL Sbjct: 241 EINSKSISTSDQMLQKLSQL 260 >YPO1804 [N] COG4786 Flagellar basal body rod protein Ype Yersinia pestis Length = 232 Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 168/232 (72%), Positives = 196/232 (84%) Query: 29 VSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQTQLPSGLQIGTGVRPVATERIFTQGNVNQ 88 +STNGFKR RAVFEDLLYQT+RQPGAQSS+QT LPSGLQIGTGVRPVATER+ +QGN++Q Sbjct: 1 MSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQ 60 Query: 89 TNNDKDLAIQGNGFFQILLPDGTTAYTRDGAFQTDSQGQLVTSSGYTLQPPITVPLNTTK 148 TNN KD+AI+G GFFQ+ +PDGT AYTRDG+FQ D GQLVT+ G+ +QP IT+P N Sbjct: 61 TNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALS 120 Query: 149 LTVGRDGVVSIMQAGSTATTQIGTIQVATFINPAGLESRGENLYMETAASGAPNPNNPGT 208 +TVGRDG+VS+ G TAT Q+G + + TFIN +GLES GENLY ETA+SGAPN PG Sbjct: 121 MTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENLYQETASSGAPNETTPGL 180 Query: 209 NGAGALWQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQMLAKLSQL 260 NG G L+QGYVETSNVNV EELVNMIQTQRAYEINSKA++TSDQML KL+QL Sbjct: 181 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQL 232 >PA1082 [N] COG4786 Flagellar basal body rod protein Pae Pseudomonas aeruginosa Length = 261 Score = 314 bits (805), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 155/259 (59%), Positives = 193/259 (74%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 M+ +LW+SKTGL AQ L ISNNLANVST GFKR RA F+DLLYQ RQPG QS+Q + Sbjct: 1 MLSALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 +LPSGLQ+GTGVR V T++IFT G++ T D+A+ G GFFQ+LLPDGT +YTRDG+F Sbjct: 61 ELPSGLQLGTGVRVVGTQKIFTPGSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 +S GQ+VTS+G+ L+P I VP T TVG+DG VS+ G+ IG IQ A FIN Sbjct: 121 HLNSDGQIVTSNGFALEPAIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIGNIQTADFIN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 PAGL++ G NL++ET +SGAP PG NG G + Q +E SNVNVVEELVNMI TQRAY Sbjct: 181 PAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQNTLENSNVNVVEELVNMITTQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQ 259 E+NSK I+T+DQML+ ++Q Sbjct: 241 EMNSKVISTADQMLSFVTQ 259 >aq_834 [N] COG4786 Flagellar basal body rod protein Aae Aquifex aeolicus Length = 262 Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 141/260 (54%), Positives = 193/260 (74%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 M R+LW S +G+ AQQT LDVIS+N+ANV+T G+K+ RA F+DLLYQTV +PGA +S T Sbjct: 1 MFRALWTSASGMTAQQTNLDVISHNMANVNTVGYKKMRATFQDLLYQTVEEPGAPTSPTT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 + PSG QIG G T IFTQGN+ +T+N D+AIQG+GFF+I+LPDGT AYTR+G F Sbjct: 61 RSPSGFQIGLGTYVSDTYGIFTQGNLTKTDNQLDIAIQGDGFFKIVLPDGTIAYTRNGQF 120 Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180 + DS+G++V S GY L P IT+P + +++ DG VS+++ G+T ++G I++A F+N Sbjct: 121 RLDSEGRIVNSDGYPLDPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIELAKFVN 180 Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240 PAGL G NLY++T ASG P +NPG G G L QGY+E+SNVN+VEE+VN+I QRAY Sbjct: 181 PAGLRRIGNNLYIQTTASGEPIIDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAY 240 Query: 241 EINSKAITTSDQMLAKLSQL 260 E N+K I +D+ML++ + L Sbjct: 241 EFNTKGIQAADEMLSQAANL 260 >VC2195 [N] COG4786 Flagellar basal body rod protein Vch Vibrio cholerae Length = 262 Score = 288 bits (738), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 143/260 (55%), Positives = 183/260 (70%), Gaps = 1/260 (0%) Query: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 M +LW+SKTGLDAQQT + ISNNLAN ST GFK+ RAVFEDL YQ + QPGAQSSQ T Sbjct: 1 MQPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNT 60 Query: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 +LPSGL +G G + VAT+++ T GNV T+N D+ I+G+GFFQIL+PDG AY+R+G F Sbjct: 61 RLPSGLMLGAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQF 120 Query: 121 QTDSQGQLVTS-SGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFI 179 D +G +VTS +GY LQP I +P + +T+G DG VS+ G +G I FI Sbjct: 121 TLDDEGAIVTSGAGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFI 180 Query: 180 NPAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRA 239 NP GLE G+NLY+ T ASG P PG +G G + Q +ETSNVNV EELVNMI+ QR Sbjct: 181 NPGGLEPVGQNLYLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTEELVNMIEAQRV 240 Query: 240 YEINSKAITTSDQMLAKLSQ 259 YE+NSK I+ D+M++ ++Q Sbjct: 241 YEMNSKVISAVDKMMSFVNQ 260