BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0047.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia ... 171 1e-42 ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia... 161 1e-39 ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherich... 160 2e-39 flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia ... 160 2e-39 STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonell... 152 8e-37 RSp0344 [N] COG1843 Flagellar hook capping protein Rso Ralstonia... 129 5e-30 PA1079 [N] COG1843 Flagellar hook capping protein Pae Pseudomona... 113 3e-25 BU339 [N] COG1843 Flagellar hook capping protein Buc Buchnera sp... 104 2e-22 VC2198 [N] COG1843 Flagellar hook capping protein Vch Vibrio cho... 92 1e-18 TM0673 [N] COG1843 Flagellar hook capping protein Tma Thermotoga... 84 3e-16 >YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia pestis Length = 225 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 131/206 (63%), Gaps = 8/206 (3%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +QNRFLTLL+AQ+KNQDP NPM+N++LT+Q+AQ++TVSGI +LN+TL + G ++SSQ+L Sbjct: 28 LQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSL 87 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 + ++IG V+ PG ++ T T D T G+ L A V TI DS G Sbjct: 88 YATSLIGRGVMVPGTNI-FTGST-------DGTVSTTPFGLELQRPADKVTATISDSNGQ 139 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+++G +GV WDG+ DAG A DG YT + ASN G ++ AT L + V V Sbjct: 140 VVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGV 199 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 + ADG KL++ GTI +V QIL Sbjct: 200 TRGADGSKLDLGLAGTITLDEVRQIL 225 >ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 231 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGBTLDLGTYGTTTLDEVRQII 231 >ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherichia coli O157:H7 Length = 231 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGNTLDLGTYGTTTLDEVRQII 231 >flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia coli K12 Length = 231 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 129/206 (62%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 G L++ GT +V QI+ Sbjct: 206 IRGNSGNTLDLGTYGTTTLDEVRQII 231 >STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonella typhimurium LT2 Length = 232 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 19 SSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLN 78 +T+ S +T ++ +Q+ FLTLL+AQ+KNQDP NP+ N++LT+Q+AQ+STVSGI +LN Sbjct: 16 KTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLN 75 Query: 79 STLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLA 138 +TL + G +++SQ+L + +IGH V+ PG ++ L + ++ + T GV L Sbjct: 76 TTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI-LAGKGAEEGAVTSTTP----FGVELQ 130 Query: 139 TNASSVVVTIKDSTGAVVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNG 198 A V TI D G VVRT+++G +GV WDG G+ +G+Y + ASN G Sbjct: 131 QPADKVTATITDKDGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSYNIAITASNGG 190 Query: 199 TAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQIL 240 T + A L F V V+ ++G L++ GT +V QI+ Sbjct: 191 TQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII 232 >RSp0344 [N] COG1843 Flagellar hook capping protein Rso Ralstonia solanacearum Length = 221 Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 130/205 (63%), Gaps = 16/205 (7%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +QN F+ LL+AQ+KNQDP NPMDNSQLTSQ+AQ++TV+GI+QLN+T++++ +SQA Sbjct: 32 LQNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQA- 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 +++IG +V P +++ L+S A GV++ A VVVTIK+++G Sbjct: 91 --SSLIGRTVEVPSSTLTLSSS-------------SASFGVSVPNGADDVVVTIKNASGT 135 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VRT+DLG ++G W+G +D G+ +DG YT +VAA+ +G+ A+AL V V Sbjct: 136 TVRTVDLGQVSAGTSNYTWNGKDDKGNTLSDGTYTISVAATLSGSTTTASALGTDKVTGV 195 Query: 215 STAADGIKLNVSNIGTIKPTDVVQI 239 + + L +++ GT K ++V I Sbjct: 196 TINSGTTLLQLASGGTTKLSNVTTI 220 >PA1079 [N] COG1843 Flagellar hook capping protein Pae Pseudomonas aeruginosa Length = 237 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 115/208 (55%), Gaps = 17/208 (8%) Query: 36 QNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALS 95 ++ FL LL+AQ+KNQDP +P N + +Q+AQ STV G+ LN ++ +++ N SSQAL Sbjct: 42 KDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNYQSSQALQ 101 Query: 96 SANMIGHSVL-APGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 +++++G V+ A SV T +T K + +NL ++S+V V + D G Sbjct: 102 ASSLVGRKVIVATDKSVVDTKDTFKAS-------------LNLPVSSSNVWVNVYDDKGT 148 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VV ++LG QA+G V +WDG + +G+ G Y F S +G V SV Sbjct: 149 VVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSV 208 Query: 215 STAADG--IKLNVSNIGTIKPTDVVQIL 240 + +G + LN++ +G+I + VQI+ Sbjct: 209 TLGQNGGELMLNLAGLGSIALSK-VQII 235 >BU339 [N] COG1843 Flagellar hook capping protein Buc Buchnera sp. APS Length = 236 Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 13/211 (6%) Query: 30 NSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLN 89 N PD +Q FL+LL+AQ+KNQDP +P+ NS LTSQ+AQ++T SG+ +LN+T+ ++ Sbjct: 38 NPPD-LQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQIS 96 Query: 90 SSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIK 149 +Q + + +IG V+ P + T +T G+ L A+SV + I Sbjct: 97 KNQNIQLSTLIGRHVMVPNKKIIHTKDT------------KTQFGIELFEKATSVEIKIT 144 Query: 150 DSTGAVVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFG 209 D + L +G WDG + + G Y +V A N + +L+ G Sbjct: 145 DDNNKTLYLKQLKETEAGRHNFFWDGQDLNKNSVMSGQYNISVIAKKNNQNIPVNSLSVG 204 Query: 210 TVASVSTAADGIKLNVSNIGTIKPTDVVQIL 240 V S+ ++ +++ G I P + +IL Sbjct: 205 VVNSIIMSSGNAIIDLGESGQITPLSIREIL 235 >VC2198 [N] COG1843 Flagellar hook capping protein Vch Vibrio cholerae Length = 235 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 19/208 (9%) Query: 7 DLLTAMNGTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMA 66 D L A+ T+ L Q FL+LL Q+ QDP P+ N Q+ +QMA Sbjct: 16 DQLKALQEQKKPDETTGQKSLK-------QEDFLSLLTKQLAQQDPFKPVSNDQMIAQMA 68 Query: 67 QLSTVSGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDV 126 +TV GI ++N+ +L ++ S+QAL +++++G VL PG + K G Sbjct: 69 SFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPG------AAGMKKPDGG-- 120 Query: 127 TKQHAVMGVNLATNASSVVVTIKDSTGAVVRTMDLGTQASGVVPVIWDGTNDAGSKAADG 186 A M V L + ++ + I++ G +VRT D+G ++SG V WDG + G+ G Sbjct: 121 ---MAAM-VKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGG 176 Query: 187 NYTFTVAASNNGTAVNATALAFGTVASV 214 Y + +G + + V SV Sbjct: 177 KYKVKASGLLDGESKEFEVSTYANVNSV 204 >TM0673 [N] COG1843 Flagellar hook capping protein Tma Thermotoga maritima Length = 224 Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 15/197 (7%) Query: 39 FLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALSSAN 98 FL LL+ +++ QDP PM+ + SQ++QL+++ I+ L S + + S A+ Sbjct: 32 FLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSPAQLAS 91 Query: 99 MIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGAVVRT 158 +IG V+ N+V L V Q + N+ +A VVV I D G +VRT Sbjct: 92 LIGKYVVVRNNTVNL------------VGGQSDSIIFNVDEDA-HVVVQILDENGKLVRT 138 Query: 159 MDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASVSTAA 218 DLGT GV WDG +D G DG+YT+ V + + G V +V Sbjct: 139 EDLGTVQVGVHAWQWDGRDDNGISVEDGSYTYRVYKLTSSGLEEIGGMEGGVVEAVQI-K 197 Query: 219 DGIKLNVSNIGTIKPTD 235 DG + N G++ P D Sbjct: 198 DGKGFVLVN-GSLYPVD 213