BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0046.p (134 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmone... 181 5e-46 flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichi... 180 9e-46 ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherich... 180 9e-46 ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escheri... 180 9e-46 YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersini... 175 2e-44 BU338 [N] COG1558 Flagellar basal body rod protein Buc Buchnera ... 152 2e-37 RSp0343 [N] COG1558 Flagellar basal body rod protein Rso Ralston... 147 6e-36 PA1078 [N] COG1558 Flagellar basal body rod protein Pae Pseudomo... 144 7e-35 VC2199 [N] COG1558 Flagellar basal body rod protein Vch Vibrio c... 128 4e-30 TM1365 [N] COG1558 Flagellar basal body rod protein Tma Thermoto... 126 1e-29 >STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmonella typhimurium LT2 Length = 134 Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 86/134 (64%), Positives = 108/134 (80%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 M+L NIF++AGSA++AQS+RLN ASN+ANADS T PDG PY+AKQVVFQ G Sbjct: 1 MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60 Query: 61 GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120 GVKVA+V+E QAP KLVY+P +P+AD NGYV MPNV+ V EMVN +SASR+YQ N+E +N Sbjct: 61 GVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLN 120 Query: 121 TAKAMLVKTLTIGQ 134 T K+M++KTLT+GQ Sbjct: 121 TVKSMMLKTLTLGQ 134 >flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichia coli K12 Length = 134 Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/134 (64%), Positives = 106/134 (79%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 M+L NIF++AGSA++AQSQRLN ASN+ANADS T PDG PY+AKQVVFQ G Sbjct: 1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60 Query: 61 GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120 GVKVA V+E QAP KLVY+P +P+AD GYV MPNV+ V EMVN +SASR+YQ NVE +N Sbjct: 61 GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120 Query: 121 TAKAMLVKTLTIGQ 134 T K+M++KTLT+GQ Sbjct: 121 TVKSMMLKTLTLGQ 134 >ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherichia coli O157:H7 EDL933 Length = 134 Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/134 (64%), Positives = 106/134 (79%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 M+L NIF++AGSA++AQSQRLN ASN+ANADS T PDG PY+AKQVVFQ G Sbjct: 1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60 Query: 61 GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120 GVKVA V+E QAP KLVY+P +P+AD GYV MPNV+ V EMVN +SASR+YQ NVE +N Sbjct: 61 GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120 Query: 121 TAKAMLVKTLTIGQ 134 T K+M++KTLT+GQ Sbjct: 121 TVKSMMLKTLTLGQ 134 >ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escherichia coli O157:H7 Length = 134 Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/134 (64%), Positives = 106/134 (79%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 M+L NIF++AGSA++AQSQRLN ASN+ANADS T PDG PY+AKQVVFQ G Sbjct: 1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60 Query: 61 GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120 GVKVA V+E QAP KLVY+P +P+AD GYV MPNV+ V EMVN +SASR+YQ NVE +N Sbjct: 61 GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120 Query: 121 TAKAMLVKTLTIGQ 134 T K+M++KTLT+GQ Sbjct: 121 TVKSMMLKTLTLGQ 134 >YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersinia pestis Length = 134 Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/134 (61%), Positives = 106/134 (79%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 MSL NIF++AGSA+SAQSQR+N +ASN+ANADS T PDG PY+AKQVVFQ G + Sbjct: 1 MSLLNIFDIAGSALSAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60 Query: 61 GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120 GV+VA +V+D +P +LVY P +P+AD GYV MPNV+ EMVN ISASR+YQ NVE +N Sbjct: 61 GVRVAQIVDDPSPDRLVYQPGNPLADAKGYVRMPNVDVTGEMVNTISASRSYQANVEVLN 120 Query: 121 TAKAMLVKTLTIGQ 134 T K++++KTLT+GQ Sbjct: 121 TTKSLMLKTLTLGQ 134 >BU338 [N] COG1558 Flagellar basal body rod protein Buc Buchnera sp. APS Length = 136 Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/136 (55%), Positives = 99/136 (72%), Gaps = 2/136 (1%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGT--PYKAKQVVFQAIPVGGVK 58 MSL NIFN+AGSAM AQSQ+LN ASN+AN DS +G PY AKQVVF K Sbjct: 1 MSLLNIFNIAGSAMIAQSQKLNVIASNLANMDSTIYKNGKFYPYIAKQVVFSLDTAKNSK 60 Query: 59 DSGVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVET 118 GVK++A+++D +P KL+YDP +PMA+ GY+ NVNP+ EMVN I+A+R+YQ N+E Sbjct: 61 IGGVKISAIIDDPSPMKLIYDPNNPMANNKGYILASNVNPITEMVNNIAAARSYQANIEV 120 Query: 119 MNTAKAMLVKTLTIGQ 134 + TAK+M++KTLTI + Sbjct: 121 LKTAKSMIMKTLTISE 136 >RSp0343 [N] COG1558 Flagellar basal body rod protein Rso Ralstonia solanacearum Length = 135 Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 77/135 (57%), Positives = 96/135 (71%), Gaps = 1/135 (0%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 MSL + +VAGSA++AQS+R+N ASN+ANA+S T PDGT Y+AKQVVF + Sbjct: 1 MSLFKVMDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFSPEQETDGYAT 60 Query: 61 GVKVAAVVEDQAPP-KLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETM 119 GV V VVED P K ++ P +P+AD +GYV MPNV+ V+EMVNMISASR+YQ NVE Sbjct: 61 GVSVDRVVEDTVTPMKRMHQPGNPLADADGYVTMPNVDVVDEMVNMISASRSYQANVEVA 120 Query: 120 NTAKAMLVKTLTIGQ 134 NT K M K LT+GQ Sbjct: 121 NTTKTMAAKALTLGQ 135 >PA1078 [N] COG1558 Flagellar basal body rod protein Pae Pseudomonas aeruginosa Length = 146 Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 77/146 (52%), Positives = 95/146 (65%), Gaps = 12/146 (8%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 MSL+++FN+AGS MSAQS RLN ASNIANA++ +S Y+A+ VF + DS Sbjct: 1 MSLASVFNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQGDS 60 Query: 61 G------------VKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISA 108 G V+V +VEDQ+ Y+P HP AD NGYV PNVN VEEM +MISA Sbjct: 61 GSLFADQDSSGAGVQVLGIVEDQSSLMPRYEPNHPAADANGYVYYPNVNVVEEMADMISA 120 Query: 109 SRAYQTNVETMNTAKAMLVKTLTIGQ 134 SRA+QTN E MNTAK M+ K LT+GQ Sbjct: 121 SRAFQTNAEMMNTAKQMMQKVLTLGQ 146 >VC2199 [N] COG1558 Flagellar basal body rod protein Vch Vibrio cholerae Length = 138 Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 4/138 (2%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60 MSL ++FNV GSAMSA+S RLN T+SN+ANADS +S YKA+ VF A + Sbjct: 1 MSLFSVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKARFNR 60 Query: 61 G----VKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNV 116 VKV +VE P ++P+HP+A+ GY+ NVN +EEM NMISASR+YQTNV Sbjct: 61 DPNVPVKVLGIVESDKPLVAEFNPEHPLANDEGYIYKSNVNVMEEMANMISASRSYQTNV 120 Query: 117 ETMNTAKAMLVKTLTIGQ 134 + + +K ML++TL +GQ Sbjct: 121 QVADASKQMLLRTLQMGQ 138 >TM1365 [N] COG1558 Flagellar basal body rod protein Tma Thermotoga maritima Length = 140 Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 4/138 (2%) Query: 1 MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVF----QAIPVGG 56 MS I N++ + MSAQ R+ ++NIANA++ + G PY+ K VF + P G Sbjct: 2 MSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAEYLRRTPNGK 61 Query: 57 VKDSGVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNV 116 ++ +GVKV + ED +P +LVYDP HP AD NGYV MPNVN V EMV++I+A RAY NV Sbjct: 62 IESAGVKVVKIEEDPSPFRLVYDPTHPDADENGYVRMPNVNIVREMVDLINAQRAYDANV 121 Query: 117 ETMNTAKAMLVKTLTIGQ 134 N KAM+ L IG+ Sbjct: 122 AAFNVTKAMVNSALQIGR 139