BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0039.p (494 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia ... 325 2e-88 VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio chol... 248 2e-65 PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas... 209 1e-53 BB0270 Non COG 121 4e-27 CAC2146 [N] COG1419 Flagellar GTP-binding protein Cac Clostridiu... 120 7e-27 Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobac... 119 2e-26 HP1035 [N] COG1419 Flagellar GTP-binding protein Hpy Helicobacte... 114 4e-25 jhp0389 [N] COG1419 Flagellar GTP-binding protein jHp Helicobact... 114 4e-25 BS_flhF [N] COG1419 Flagellar GTP-binding protein Bsu Bacillus s... 108 4e-23 BH2437 [N] COG1419 Flagellar GTP-binding protein Bha Bacillus ha... 106 1e-22 >RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia solanacearum Length = 615 Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/301 (51%), Positives = 212/301 (70%) Query: 171 DEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITEN 230 D + ++ EI ++ L ++ ++ G + +P++ + + ML AGFSA L+R + +N Sbjct: 293 DAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVLDN 352 Query: 231 LPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCV 290 +P + + +V+ L +NL + NEN LL+ GGVFA++GPTGVGKTTTTAKLAAR V Sbjct: 353 MPQHGTYDSALDFVQRALEKNLTVVPNENSLLDQGGVFALMGPTGVGKTTTTAKLAARFV 412 Query: 291 MRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLID 350 +RHG+ ++AL++TD YRIGG+EQLRIYGKILGV VH+VKD DL +AL +L+ KH VLID Sbjct: 413 LRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDLSLALGDLREKHVVLID 472 Query: 351 TAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKL 410 T G+ QRD+ V+EQ AML G IKRLL LNAT+ G TL+EVV AY + LAGCI+TK+ Sbjct: 473 TIGMSQRDRAVSEQMAMLHAVGPSIKRLLLLNATSNGKTLDEVVSAYRDANLAGCILTKI 532 Query: 411 DEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEG 470 DEAA++G+ +D +IRH+L LHYV+ GQRVPED+ V NK L R F+ E + F Sbjct: 533 DEAASVGHAMDAMIRHRLPLHYVSYGQRVPEDIAVPNKKMLIHRTFRTSAEQSSFALDSD 592 Query: 471 E 471 E Sbjct: 593 E 593 >VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio cholerae Length = 495 Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 162/479 (33%), Positives = 259/479 (54%), Gaps = 30/479 (6%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 M +K+F A + A QV+E LG DAVI+SN+ + GVEI+A + D AP A+ Sbjct: 1 MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGD----TAPAPAKRY 56 Query: 61 SGRPQAASLQQQSGLPPAQQPR----RPALLSSPPAQARPAREGAPLLDQPGS-ERSQAR 115 + +P+ Q + P + R +L SS + + A +L Q S + + R Sbjct: 57 NSQPRHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHR 116 Query: 116 AEAAPAADARVWR---SRTRDSGNAQRRAAAPA----GAPQGQEQEQDRPRSALPEFDGK 168 AE + A + R +R QR ++ +P G+ ++D P D Sbjct: 117 AENEDSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPLGKLLQEDADARRKPRLDPT 176 Query: 169 DYDEILSE----VMSEIRSMRG-------VLETQLAEISWGGTQKREPLKGIVLKEMLAA 217 YD + E +SE+ SMR +LE Q++ + W ++REPL+ +++K + Sbjct: 177 RYDRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERM 236 Query: 218 GFSASLSRLITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVG 277 G S ++ + +P + + +++ + + ++++L+ GGV A++GPTGVG Sbjct: 237 GVSLEMADQLACYIPEETPPPKAWKALLGLVSDQIPVV--KHDILKRGGVVALLGPTGVG 294 Query: 278 KTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIA 337 KTTT AKLAAR M +GS +AL+TTD YRIG +EQL IYG+I+G V KD +L Sbjct: 295 KTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADV 354 Query: 338 LEELKGKHTVLIDTAGVGQRDQMVAEQ-DAMLTGAGVDIKRLLCLNATATGGTLNEVVHA 396 + +L+ + +L+DTAG+GQRD ++EQ D ++ +G I L L ATA L E + Sbjct: 355 IYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEH 414 Query: 397 YSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRA 455 + L+GCI+TKLDE ++G + VV+++ L + Y+ANGQRVPED+ +A Y+ +A Sbjct: 415 FRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKA 473 >PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas aeruginosa Length = 429 Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/473 (31%), Positives = 224/473 (47%), Gaps = 58/473 (12%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 M VK+F A R+A + VR+ LGPDA IL NR + G+E+ Sbjct: 1 MQVKRFFAADMRQAMKLVRDELGPDAAILGNRRVAGGIEL-------------------- 40 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPAL-LSSPPAQARPAREGAPLLDQPGSERSQARAEAA 119 A+L Q+ PPA PAL + QAR A A L +P + + R A Sbjct: 41 -----TAALDYQA--PPAPSKPNPALEVELRKTQARIAEARAELTARPAETQRKDRQLFA 93 Query: 120 PAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMS 179 AR + + + +A+ P+ G + L + Sbjct: 94 EEKPARPTLAESMTAAHAK------------------------PQVGG----QTLEAMRF 125 Query: 180 EIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQD 239 E+ +R ++E QL I+WG Q + P + + + + G A LS+ + E + A ++ Sbjct: 126 ELNGLRELIEVQLGSIAWGQLQHQRPQQANLWRRLQRMGLPAELSKPLLERVAAVGDTRQ 185 Query: 240 IMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLA 299 + + L+R + T E + L+ GGV A+VGP G GKTTT AK+AAR V+++G+ LA Sbjct: 186 AWRMLLAHLSRAVQT--PEQDPLDAGGVLALVGPAGAGKTTTLAKMAARYVLKYGAQSLA 243 Query: 300 LITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQ 359 L++ D YRIG EQ++ G+IL V V V L AL L K VLIDTAG+ D Sbjct: 244 LVSMDSYRIGAQEQIKTLGRILNVPVTLVDPGQSLIQALAPLARKRMVLIDTAGLPASDP 303 Query: 360 MVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNV 419 + Q L +++K L + T+ L Y GLAGCI+TKLDEA ++G Sbjct: 304 ALRMQLEALASPSLNVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGES 363 Query: 420 LDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGEL 472 + + I +L + Y+A+G R+P+DL VA L RA + P E E+ Sbjct: 364 MALAIAQRLPVAYLADGPRIPDDLQVARSHQLVSRAVSLQAPEEPSEDAMAEM 416 >BB0270 Non COG Length = 388 Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Query: 267 VFAMVGPTGVGKTTTTAKLAARCVMRHGSGKL--ALITTDGYRIGGYEQLRIYGKILGVM 324 VF +VGPTGVGKTTT AKLAA + S L +IT D YRIG +Q++ YG I+G+ Sbjct: 176 VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 235 Query: 325 VHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM-VAEQDAMLTGAGVDIKRLLCLNA 383 V +++ DL+ + + K +L+DT G +D M +AE +L G D + L +++ Sbjct: 236 VRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS 295 Query: 384 TATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDL 443 T + E+ H +S I TK+DE +GN++ ++ K + YV +GQ VP ++ Sbjct: 296 TTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCVGNLISLIYEMKKVVSYVTDGQIVPHNI 355 Query: 444 HVANKLYLADR 454 VA L R Sbjct: 356 SVAEPLTFIRR 366 >CAC2146 [N] COG1419 Flagellar GTP-binding protein Cac Clostridium acetobutylicum Length = 389 Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 120/445 (26%), Positives = 193/445 (43%), Gaps = 77/445 (17%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 M VKK+I S EA +++ LG DAVI+S R + IL + ++ L+ T A D Sbjct: 1 MVVKKYIVKSMNEAMAKIKYDLGSDAVIISQRKVKKR-GILGIFSK---KLIEVTAAVDN 56 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120 S + +R + S P + E + L Sbjct: 57 SKDTK----------------KRENIYSKP----QYTEENSDL----------------- 79 Query: 121 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMSE 180 +S A +RA + +E + R L + D IL E M E Sbjct: 80 -----------NESVEALKRAM-----KKHEETTKVEKRRVLEDVKSSGEDRILRE-MEE 122 Query: 181 IRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQDI 240 ++ + G + + A+ +E I LK + A + + I +N+ + D+ Sbjct: 123 MKKLIGNISSSNAD--------QEEKSEIELK-LEEADINEGYIKEIVKNIMDDKSDIDL 173 Query: 241 MFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL 300 +KS L +N+ E E G+ VGPTGVGKTTT AKLA + + K+ L Sbjct: 174 NLKLKSALEKNI-----EISKTEEKGIITFVGPTGVGKTTTIAKLAGKFSLIEKK-KVGL 227 Query: 301 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM 360 IT D YRIG EQLR Y I+ + V ++ A++ ++ +L+DT G +++M Sbjct: 228 ITVDTYRIGAVEQLRTYADIMNLPFKVVLTLKEMDEAIKSMQNCDIILVDTTGRSSKNKM 287 Query: 361 -VAEQDAMLTGAG-VDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGN 418 ++E A ++ ++I L ++AT L ++ Y IITKLDE T G+ Sbjct: 288 QISELRAFVSKTNSLNIN--LVISATTKNRDLEAIIDGYRQLDFQNVIITKLDETTTYGS 345 Query: 419 VLDVVIRHKLNLHYVANGQRVPEDL 443 +++++ L YV GQ VP+D+ Sbjct: 346 IINILNYAHKPLSYVTTGQNVPDDI 370 >Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobacter jejuni Length = 484 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 121/242 (50%), Gaps = 6/242 (2%) Query: 214 MLAAGFSASLSRLITENLPANSKSQD--IMFWVKSVLARNLNTLANENELLENGGVFAMV 271 ML A + I EN+PA K+ + + S+L RN+ E+++ + + +V Sbjct: 232 MLENHLEAIMKATI-ENMPAAMKTNKDAVQRYFHSLL-RNILPCRVESDI-KKQKIMMLV 288 Query: 272 GPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE 331 GPTGVGKTTT AKLA R K +IT D YRIG EQL Y K++ + + + Sbjct: 289 GPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEP 348 Query: 332 TDLRIALEELKGKHTVLIDTAGVGQRDQ-MVAEQDAMLTGAGVDIKRLLCLNATATGGTL 390 DL A++ L +L+DT G Q DQ +A+ L + +I L ++A L Sbjct: 349 KDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEIDVNLVVSANTKHEDL 408 Query: 391 NEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLY 450 E+ +S + IITK DE GN+ +V + L + + GQ VP+DL VAN + Sbjct: 409 MEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEVANSDF 468 Query: 451 LA 452 L Sbjct: 469 LV 470 >HP1035 [N] COG1419 Flagellar GTP-binding protein Hpy Helicobacter pylori 26695 Length = 459 Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 4/213 (1%) Query: 243 WVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCV-MRHGSGKLALI 301 + + VL R + E+ L + +VGPTGVGKTTT AKLAAR M K+ +I Sbjct: 235 YFREVL-RKMILCCPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGII 293 Query: 302 TTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRD-QM 360 T D YRIG EQL Y + + + +V D D +E L+ +L+DT G Q D + Sbjct: 294 TLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEYCDFILVDTTGHSQYDKEK 353 Query: 361 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL 420 +A + G G +I L L+ T + ++ ++ G+ I TKLDE+ +GN+ Sbjct: 354 IAGLKEFIDG-GYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLF 412 Query: 421 DVVIRHKLNLHYVANGQRVPEDLHVANKLYLAD 453 +V + + Y++ GQ VP DL VA YL D Sbjct: 413 SLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 445 >jhp0389 [N] COG1419 Flagellar GTP-binding protein jHp Helicobacter pylori J99 Length = 455 Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 3/189 (1%) Query: 267 VFAMVGPTGVGKTTTTAKLAARCV-MRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMV 325 + +VGPTGVGKTTT AKLAAR M K+ +IT D YRIG EQL Y + + + Sbjct: 254 ILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSI 313 Query: 326 HSVKDETDLRIALEELKGKHTVLIDTAGVGQRD-QMVAEQDAMLTGAGVDIKRLLCLNAT 384 +V D D +E L+ +L+DT G Q D + +A + G G +I L L+ T Sbjct: 314 EAVIDAKDFAKEIEALEYCDFILVDTTGHSQYDKEKIAGLKEFIDG-GYNIDVSLVLSVT 372 Query: 385 ATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLH 444 + ++ ++ G+ I TKLDE+ +GN+ +V + + Y++ GQ VP DL Sbjct: 373 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLK 432 Query: 445 VANKLYLAD 453 VA YL D Sbjct: 433 VATNEYLVD 441 >BS_flhF [N] COG1419 Flagellar GTP-binding protein Bsu Bacillus subtilis Length = 366 Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 1/186 (0%) Query: 264 NGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGV 323 + + G TG GKTTT AKLAA M K+A ITTD YRI EQL+ Y ++L Sbjct: 174 HSKYIVLFGSTGAGKTTTLAKLAA-ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQA 232 Query: 324 MVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNA 383 + + + + A E V +DTAG +D ++ I+ L L+A Sbjct: 233 PLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSA 292 Query: 384 TATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDL 443 TA + +V +SS + I TK+DE ++G+V +++ K+ + ++ NGQ VPED+ Sbjct: 293 TAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI 352 Query: 444 HVANKL 449 + L Sbjct: 353 QTVSPL 358 >BH2437 [N] COG1419 Flagellar GTP-binding protein Bha Bacillus halodurans Length = 375 Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 7/203 (3%) Query: 247 VLARNLNTLANENELLENGGV------FAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL 300 +L + L + LL GG+ +VGPTGVGKTTT AKLAA V++ K+AL Sbjct: 155 LLTKGEQLLKRKLSLLPEGGITFQKKFVNIVGPTGVGKTTTIAKLAAHSVLK-KKKKVAL 213 Query: 301 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM 360 ITTD YRI EQL+ Y KIL + + V D + A + VL+D+AG R+ + Sbjct: 214 ITTDTYRIAAVEQLKTYAKILNIPLEVVYSMEDFQKAKNQFIHYDLVLVDSAGRNFRNAL 273 Query: 361 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL 420 ++ + + + L L+ T + ++ +S + I TK DE T G +L Sbjct: 274 YVKELEKVIDFKHEAENYLVLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAML 333 Query: 421 DVVIRHKLNLHYVANGQRVPEDL 443 +++ + YV NGQ VP+D+ Sbjct: 334 NMMFEQGKGVAYVTNGQNVPDDI 356