BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0012.p (197 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 261 9e-70 RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 238 6e-63 CC3562 Non COG 219 2e-57 yfdE [C] COG1804 Predicted acyl-CoA transferases/carnitine dehyd... 155 8e-38 ZyfdEm [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 152 3e-37 PA1188 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh... 146 3e-35 BMEI0898 [C] COG1804 Predicted acyl-CoA transferases/carnitine d... 144 9e-35 BMEII0224 [C] COG1804 Predicted acyl-CoA transferases/carnitine ... 143 2e-34 AGc3858 [C] COG1804 Predicted acyl-CoA transferases/carnitine de... 137 2e-32 SMb21182 [C] COG1804 Predicted acyl-CoA transferases/carnitine d... 136 2e-32 >PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Pae Pseudomonas aeruginosa Length = 409 Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 126/182 (69%), Positives = 152/182 (83%) Query: 7 KPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWS 66 P PLAG+KV+ELGTLIAGPF SR+ AEFGA+VIK+E+P GDPLR+WR L +GTSLWW Sbjct: 14 SPKPLAGLKVVELGTLIAGPFASRICAEFGAEVIKIESPDGGDPLRKWRKLYEGTSLWWF 73 Query: 67 VQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIM 126 VQARNKKS+TLN+K Q I ++L +AD++IEN+RPGVLEK LG++ L LNP +M Sbjct: 74 VQARNKKSLTLNLKHAEGQAILKRLLGDADILIENFRPGVLEKLGLGWDVLHALNPRLVM 133 Query: 127 VRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAM 186 VRLSG+GQTGP +D PGFGA+GESMGG+RY++G DRPPVR GISIGDSIAAL GVIGA+ Sbjct: 134 VRLSGFGQTGPYKDQPGFGAVGESMGGLRYITGFEDRPPVRTGISIGDSIAALWGVIGAL 193 Query: 187 MA 188 MA Sbjct: 194 MA 195 >RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Rso Ralstonia solanacearum Length = 405 Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 105/178 (58%), Positives = 140/178 (78%) Query: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQAR 70 L I+VLELG LIAGPF ++ LA+FGA VIK+E PG GDPLR+WR+L +GTS+WW Q+R Sbjct: 9 LQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSR 68 Query: 71 NKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRLS 130 NK+S+ ++++ Q++ R+LA EADV+IEN+RPG +EKW L YE L +NP IM+R+S Sbjct: 69 NKQSVCVDLRVPEGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINPGLIMLRVS 128 Query: 131 GYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMA 188 GYGQTGP RD PGF AI E+M G+RY++G P RPP R G+S+GD+IA LHG +G ++A Sbjct: 129 GYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPARAGLSLGDTIAGLHGALGVLLA 186 >CC3562 Non COG Length = 433 Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 138/184 (75%), Gaps = 1/184 (0%) Query: 6 SKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQW-RVLKDGTSLW 64 S GPL G++V+E+G+LIAGPFC ++L +FGA+VIK+E P GDP+RQW R G S W Sbjct: 35 SPTGPLQGLRVIEMGSLIAGPFCGQVLGDFGAEVIKLEDPKVGDPMRQWGRSKPKGLSPW 94 Query: 65 WSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPAT 124 W V RNKKS+T++++ E ++IAR L +ADV++EN+RPG LEKW +GYE L + NP Sbjct: 95 WPVIGRNKKSVTVDLRSEAGRDIARALIAKADVVVENFRPGTLEKWGMGYEALAKTNPGL 154 Query: 125 IMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIG 184 +M R+SG+GQTGP G+ +GE+MGG+R+++G PDRPP R GISIGDS++ L+ +G Sbjct: 155 VMARVSGFGQTGPYASRAGYALVGEAMGGLRHITGEPDRPPARAGISIGDSLSGLNAALG 214 Query: 185 AMMA 188 MMA Sbjct: 215 VMMA 218 >yfdE [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Eco Escherichia coli K12 Length = 394 Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 117/192 (60%), Gaps = 4/192 (2%) Query: 1 MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG 60 MT SK GP G+ V+++ ++ GPF +++L GA VIKVE PG+GD R + DG Sbjct: 14 MTNNESK-GPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDG 72 Query: 61 TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL 120 SL++S K+S+ L++K++ + I + +ADV+ EN+RPG +EK +E L+++ Sbjct: 73 QSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEI 132 Query: 121 NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGD---SIA 177 NP I SG+G TGPL+D P + I ++M GI +G+PD PPVR+G S+ D + Sbjct: 133 NPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVY 192 Query: 178 ALHGVIGAMMAR 189 G++ A+ R Sbjct: 193 LFSGIVSALYGR 204 >ZyfdEm [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase EcZ Escherichia coli O157:H7 EDL933 Length = 394 Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 118/192 (61%), Gaps = 4/192 (2%) Query: 1 MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG 60 MT SK GP G+ V+++ ++ GPF +++L GA VIKVE PG+GD R + DG Sbjct: 14 MTNNESK-GPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDG 72 Query: 61 TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL 120 +L++S K+S+ L++K++ + I + +ADV+ EN+RPG +EK L +E L+++ Sbjct: 73 WTLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGLSWERLQEI 132 Query: 121 NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGD---SIA 177 NP I SG+G TGPL+D P + I ++M GI +G+PD PPVR+G S+ D + Sbjct: 133 NPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVY 192 Query: 178 ALHGVIGAMMAR 189 G++ A+ R Sbjct: 193 LFSGIVSALYGR 204 >PA1188 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Pae Pseudomonas aeruginosa Length = 393 Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 1/181 (0%) Query: 9 GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQ 68 GPL+ +KVL+ TL+ GPF S +LA+ GADV++VE+PG D +R DGTS + Sbjct: 3 GPLSSLKVLDFSTLLPGPFASLLLADMGADVLRVESPGRMDLVRVLPPHVDGTSASHAYL 62 Query: 69 ARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVR 128 RNK+SI L++K + A+E+ +L E D+++E +RPGV++K +GYE LK NP I V Sbjct: 63 NRNKRSIGLDLKRQGAREVVLELVREYDIVLEQFRPGVMDKLGVGYEALKAANPRLIYVA 122 Query: 129 LSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGD-SIAALHGVIGAMM 187 ++GYGQTGP R+ G ++ G+ +G +R P+ +G+ + D + +LHGV+G + Sbjct: 123 ITGYGQTGPYRERAGHDINYLALAGVASYTGRRERGPLPLGVQLADLAGGSLHGVMGLLA 182 Query: 188 A 188 A Sbjct: 183 A 183 >BMEI0898 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Bme Brucella melitensis Length = 400 Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQW-----RVLKDGTSLW 64 PL G+KV+EL ++AGP+ + L + GADVIKVE+P GD R W V + ++ + Sbjct: 24 PLDGLKVVELARILAGPWVGQTLCDLGADVIKVESP-EGDDTRTWGPPFIDVEGERSAAY 82 Query: 65 WSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPAT 124 + R K+SIT + + E +E+ R+L EADV+IEN++ G L+K+ L YE LK +NP Sbjct: 83 FHACNRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQL 142 Query: 125 IMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIG 184 I ++G+G TGP + G+ + + MGGI ++G PDR P +IG++ D L+ VI Sbjct: 143 IYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADIFTGLYSVIA 202 Query: 185 AMMA 188 A Sbjct: 203 IQSA 206 >BMEII0224 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Bme Brucella melitensis Length = 454 Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 4/187 (2%) Query: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLK-DGTSLWWSVQ 68 PLAGIKVL+L ++AGP+ + LA+ GA+V K+E GD R W V G S ++ Sbjct: 52 PLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTRAWSVPNYKGASTYFLCA 111 Query: 69 ARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVR 128 R KKS+ L++K EI +LA +ADV++EN+R G +E+ K+ YE LK LNP + Sbjct: 112 NRGKKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLKIDYESLKALNPGIVYCS 171 Query: 129 LSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIA---ALHGVIGA 185 +SGYGQTGP PG+ + ++ G+ ++G D P RIG+++ D +A A V+ A Sbjct: 172 ISGYGQTGPEAQRPGYDFVVQAESGLMSITGQIDGEPTRIGVAMTDIVAGMVATQSVLAA 231 Query: 186 MMARPTV 192 + R T Sbjct: 232 LYQRKTT 238 >AGc3858 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 419 Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 7/189 (3%) Query: 1 MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQW----RV 56 MT ++ PL+GI+V+EL ++AGP+ +MLA+ GADVIKVE P GD R W Sbjct: 20 MTDMPNRKPPLSGIRVIELARVLAGPWAGQMLADMGADVIKVENPEGGDDTRAWGPPFVE 79 Query: 57 LKDGTSL---WWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLG 113 DG +L ++ R K+SI ++K + R+L ADV+IEN++ L K+ L Sbjct: 80 SADGENLSAAYYHATNRGKRSIVADLKTPEGCALVRRLVRTADVVIENFKRDGLAKYGLD 139 Query: 114 YEDLKQLNPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIG 173 YE L+ LNP I ++G+GQTGP D G+ I + M G ++G PD P++ G+++ Sbjct: 140 YESLRVLNPKLIYCSITGFGQTGPYADFAGYDYIVQGMSGFMSITGEPDGQPMKAGVAVA 199 Query: 174 DSIAALHGV 182 D ++ V Sbjct: 200 DIFTGIYSV 208 >SMb21182 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase Sme Sinorhizobium meliloti Length = 394 Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 8/186 (4%) Query: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQW----RVLKDGTSL-- 63 PL GI+VLEL ++AGP+ + LA+ GADVIKVE+P GD R W +D L Sbjct: 4 PLKGIRVLELARILAGPWIGQTLADLGADVIKVESPA-GDDTRTWGPPFVTGEDDERLDA 62 Query: 64 -WWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNP 122 ++ R K+S+ L+ QE R+LA ++DV++EN++ G L K+ L YE L ++NP Sbjct: 63 AYFHACNRGKRSVVLDFTTAEGQEAVRRLAAQSDVLLENFKVGGLAKYGLDYESLSKVNP 122 Query: 123 ATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGV 182 I ++G+GQ GP G+ I + M GI ++G PDR P +IG++ D L+GV Sbjct: 123 RLIYCSVTGFGQDGPYAHRAGYDYIVQGMSGIMDLTGEPDREPQKIGVAFADIFTGLYGV 182 Query: 183 IGAMMA 188 I A Sbjct: 183 IAVQAA 188