BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0008.p         (172 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1191 [L] COG2812 DNA polymerase III, gamma/tau subunits Rso R...   110   2e-24

>RSc1191 [L] COG2812 DNA polymerase III, gamma/tau subunits Rso Ralstonia
           solanacearum
          Length = 728

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 84/127 (66%), Gaps = 6/127 (4%)

Query: 45  WDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLT 104
           +DG WPTLAA L  LRG+A Q+A QSELV  E   G  V   LR+PL  L  +  +E+L 
Sbjct: 605 FDGDWPTLAARL-PLRGLAQQLAHQSELVAVE---GATV--RLRVPLPALTEASVLERLE 658

Query: 105 AALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASI 164
           AAL+E FG  +RV  +IGAV  TA A    +RA+RQR AE  +  DPFV  ++R+F A++
Sbjct: 659 AALTEHFGTPVRVVCDIGAVRATAAAADAEQRAQRQRDAEDAIAADPFVQALVRDFAATV 718

Query: 165 VPGSIQP 171
           VPGSIQP
Sbjct: 719 VPGSIQP 725