BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0039.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 161 1e-39 RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing prot... 147 1e-35 mll3235 [K] COG2207 AraC-type DNA-binding domain-containing prot... 146 4e-35 AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing prot... 145 8e-35 PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 145 1e-34 PA0163 [K] COG2207 AraC-type DNA-binding domain-containing prote... 144 2e-34 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 142 7e-34 SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing pro... 142 9e-34 PA1229 [K] COG2207 AraC-type DNA-binding domain-containing prote... 135 6e-32 PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 135 6e-32 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 3/236 (1%) Query: 7 RYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQ 66 RYP G VP H H + L+ A G++ V ++G+W++P A+W+ +GV HS+A+ + Sbjct: 52 RYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGVEHSVAILGDVF 111 Query: 67 AYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLT 126 +++ D + +P + VV ++ L+R LII R L+ L++ ++ T Sbjct: 112 MRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGLVIELILRDLHT 171 Query: 127 QPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGM 186 P P LP+P +D + +LC+ + P AT EWADR+AM +++F R F + TG+ Sbjct: 172 LPEYPLGLPFP---SDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTRHFQRETGV 228 Query: 187 TFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFFP 242 + WRQQ L +++P L +G P+T VAL GYDS SA+TT F + G PP + P Sbjct: 229 SLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPPKFYQP 284 >RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 268 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 10 AGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYG 69 A S P H H + Y+ +G+LRVQA W+VPP+ A+W+ G+ H + + Sbjct: 32 ANSRFPRHTHAWAQVAYSHTGVLRVQAGDTAWVVPPSRAIWIPPGIEHEVWVVEAAFLRT 91 Query: 70 LFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLTQPT 129 L+V V A V+ VSPLLRELI + R +SA R + + L+++E+ Sbjct: 92 LYVDPSVVTGTLAQCRVMEVSPLLRELIAAMDVRRP--LSAAREQAVATLILDELHRSAP 149 Query: 130 LPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFG 189 LP LP P TD + LC+ ++ DPG T A + +T RRF G+ F Sbjct: 150 LPLDLPMP---TDKRLRALCERVMADPGTPLTFDALAREVGASTRTLARRFRDELGVNFS 206 Query: 190 KWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFF 241 +WRQQ L S++PL+ QG+P++++A A GY+S SA++ F + FG+ PSAF Sbjct: 207 QWRQQAVLASAIPLMSQGLPLSRIAQALGYNSQSAFSAMFRRAFGQSPSAFL 258 >mll3235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 268 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 14 VPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVR 73 V H H +G L++A SG + + SG W+VPP VW+ S + HS + + +++ Sbjct: 35 VSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCGVWVPSRMQHSNIATANARIFFVYIE 94 Query: 74 QDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLTQPTLPFH 133 A LP C + +SPLLRELII L+ ++ R LG++++ E+ P H Sbjct: 95 PGA-AELPDRCCTLSISPLLRELIIELSDCAPDD---ARCAFLGSVLLAELPDMPVQQLH 150 Query: 134 LPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKWRQ 193 LP ++ + R+ +AL +DP D +T AEW R+A+ + + R ++ TG++FG+WRQ Sbjct: 151 LP---ISSEPRLKRIAEALANDPADRSTLAEWGKRVALSESSLARLVVKETGLSFGRWRQ 207 Query: 194 QLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFF 241 QL L+ ++ L G + +V+ GY+S +A+ T F K GKPP+ + Sbjct: 208 QLHLIVAIRELASGASVQRVSGDLGYESVTAFITMFKKALGKPPAQYL 255 >AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 15 PMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVRQ 74 P HQH +G L+ G + + SG W+VPP VW+ G+ HS + + LF+ + Sbjct: 43 PEHQHRKGQLVMPLRGGVTCRVPSGMWMVPPHCGVWVPGGMLHSNVATANARLFFLFI-E 101 Query: 75 DVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLTQPTLPFHL 134 A LP C + +SPL+RELII LA E ++ L+ L++ + P HL Sbjct: 102 PGAADLPNRCCTLSLSPLVRELIIELADQSE--VATADSELMTTLLLSALSRMPVEHLHL 159 Query: 135 PWPMSETDGP-MARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKWRQ 193 P TD P +AR+ L DDP D +T A+WA R+AM + + R TG+TFG+WRQ Sbjct: 160 PL----TDEPRLARIASELADDPSDRSTMAQWARRVAMSENSLARLVQHQTGLTFGRWRQ 215 Query: 194 QLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFF 241 QL+L+ ++ L G + QV+ GY+S SA+ T F K G PS + Sbjct: 216 QLQLIIAIRSLASGATVQQVSGDLGYESVSAFITMFKKALGTSPSRYL 263 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 10/243 (4%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V + YP G ++P H+H + L+Y SG+++V+ W+VPP AVW+ GV H + Sbjct: 16 VVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIPPGVEHEVR 75 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 M + + L++ +PA V+ VSPLLR+L++ E + R L L+ Sbjct: 76 M-LGVSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTEGRDGALATLL 134 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMAR---LCQALLDDPGDMATAAEWADRLAMGQKTFH 177 + E+ TLP H+P P P R LC+A L +P A+A WA L ++F+ Sbjct: 135 LHELAAAETLPLHVPLP------PEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRSFN 188 Query: 178 RRFLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPP 237 R F + TG++FG W+Q+ ++ +L L G +T +AL GY S +A++T F + G+PP Sbjct: 189 RTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVLGQPP 248 Query: 238 SAF 240 SAF Sbjct: 249 SAF 251 >PA0163 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 265 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 127/247 (51%), Gaps = 8/247 (3%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V+ + AGS H+H L YA SG+L V G + PP A+W+ + + H + Sbjct: 24 VYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAIWIPAQLEHEVV 83 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQ---AREENMSAKRMRLLG 117 + L++R D CA P V+ V+PL RELI + + E SA+ RL+ Sbjct: 84 TSTRAEMRSLYIRGDACAWAPTRCRVLEVTPLARELIKSFCELPVDYPEGDSAE-SRLVQ 142 Query: 118 ALVMEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFH 177 L ++++ P + F LP P + + RLCQAL+D+P T +WA RL +KT Sbjct: 143 VL-LDQLRLLPEVAFSLPMP---REPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLS 198 Query: 178 RRFLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPP 237 R F + TGM + WRQ+ RL++SL L G +T AL SGYDS SAY AF FG P Sbjct: 199 RLFQRETGMNYRLWRQRQRLLASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGLFGFTP 258 Query: 238 SAFFPAR 244 F R Sbjct: 259 GELFRQR 265 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 3/234 (1%) Query: 8 YPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQA 67 YP G VP H+H + L++A G++ V G+W+VPP A+W+ +G+ HS+ M + Sbjct: 40 YPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAMWIPAGIEHSVEMLGDVSM 99 Query: 68 YGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLTQ 127 ++V LP VV V+ L+ LI+ + + R L+ L++ E+ T Sbjct: 100 RSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTL 159 Query: 128 PTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMT 187 P P LP+P +D +A LC+ + P AT EWAD M +++F R F + TG++ Sbjct: 160 PERPLGLPFP---SDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLS 216 Query: 188 FGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFF 241 WRQQ L ++LP L G PIT+VAL GYDS A+ T F + G P + Sbjct: 217 LSTWRQQACLFAALPRLADGEPITRVALDLGYDSVPAFITMFKRMLGSSPRGYM 270 >SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 260 Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 7/242 (2%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V + Y G VP H H + L +A SG++ V G+W++PP A+ + +G+ HS Sbjct: 20 VLAIGRDYACGLTVPSHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALLIPAGIEHSAE 79 Query: 61 MPVTLQAYGLFVRQDVC-ARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGAL 119 M ++ + +++ + AR P V+ +S L+ LI L A E S +R L+ L Sbjct: 80 MVSDVRMHSIYISPEASEARRP---LVLEMSALVGSLIDELVGAGNEASSERRESLMMEL 136 Query: 120 VMEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRR 179 ++ E+ P LP+P D +A LC+ L+ P A WA R+ + +++F R Sbjct: 137 LLTEIPRLNQRPLGLPFP---RDRKLAALCRQFLEAPSASANIDAWAARMGISRRSFTRL 193 Query: 180 FLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSA 239 F Q TG++F WRQ + +SLP + G PIT VAL +GY++ +A+TT F + G PPS Sbjct: 194 FRQETGVSFVTWRQHACIFASLPRIADGEPITTVALDAGYENVAAFTTMFRRMLGAPPSV 253 Query: 240 FF 241 + Sbjct: 254 YL 255 >PA1229 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 268 Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 14 VPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVR 73 VP+H+H +G L+ A G + G W+VP VW+ G+AHS + + LFV Sbjct: 36 VPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVWIPGGIAHSNRVTANGKVCFLFV- 94 Query: 74 QDVCARLPAFDCVVHVSPLLRELIITL-AQAREENMSAKRMRLLGALVMEEVLTQ-PTLP 131 + ARLP+ C + +SPL+ ELI+ L AQ ++ RL G L+ E+L Q PT Sbjct: 95 EPGAARLPSDCCTLALSPLVLELILHLSAQPQDYPHDGPLARLAGVLL--ELLEQAPTEQ 152 Query: 132 FHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKW 191 +LP P + + R+ L PGD A+ AEWA R+AM +++ R + TGMTFG+W Sbjct: 153 LYLPLPDNRG---LRRIADELTRAPGDRASMAEWARRVAMSERSLARMVRRETGMTFGQW 209 Query: 192 RQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 RQQL+++ +L L G+ + + A GY+S S++ F K G PP+ + Sbjct: 210 RQQLQIIIALQQLSAGVSVQRTAEILGYESVSSFIGMFRKALGSPPARY 258 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 3/239 (1%) Query: 3 GVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMP 62 +S +P G + H HPQ +YA GL+R+ G W++PPT AVW+ V H + M Sbjct: 13 AISLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFMS 72 Query: 63 VTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVME 122 + LF+ Q + CV+ V+PLLRE+I+ + + L L++ Sbjct: 73 GEVHMRTLFIEQPETPTPLSDCCVLAVTPLLREMILRAIHLESQPRLDDFCQRLQGLILS 132 Query: 123 EVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQ 182 E+ +P +LP P D + +CQALL P T +W R+ +T R F Q Sbjct: 133 EIANLERMPLYLPMP---RDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTLARLFAQ 189 Query: 183 STGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFF 241 M+F +WRQQLRL +LP L+ G + VA GY S A+++ F + G+ P + Sbjct: 190 ELQMSFHEWRQQLRLTEALPRLLAGDSVQVVARDLGYGSTRAFSSMFRRLLGETPRDYL 248