BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0028.p (190 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi... 186 2e-47 SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium me... 137 1e-32 AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tum... 135 5e-32 mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti 129 5e-30 Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium g... 86 4e-17 ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O1... 79 6e-15 RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanac... 75 8e-14 YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis 74 2e-13 ECs1020 [R] COG0431 Predicted flavoprotein Ecs Escherichia coli ... 72 6e-13 BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans 72 8e-13 >PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa Length = 186 Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/176 (53%), Positives = 124/176 (70%) Query: 1 MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60 M+ P +VV V+G RPSRTL L A+ A+LGQ L I + V+ L+D+A L + Q Sbjct: 1 MTSPFKVVAVSGGTYRPSRTLVLTQALIAELGQSLPIDSRVIELTDIAAPLGATLARNQA 60 Query: 61 PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120 P ++ + IESAD+L+ SPVYRGSY GL KHLFDL+ +LI PVLLAATGG++RH Sbjct: 61 PAELQAVLDEIESADLLLVASPVYRGSYPGLLKHLFDLIDLNALIDTPVLLAATGGTERH 120 Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVL 176 AL +DHQLRPLF+FFQA+TLP+GVYA+ +FDN I+S L+ RI L +RA P+ Sbjct: 121 ALVLDHQLRPLFSFFQAITLPIGVYASEADFDNYRIVSEPLKARIRLAAERAAPLF 176 >SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium meliloti Length = 185 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/167 (41%), Positives = 101/167 (60%) Query: 6 QVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQLPDPVR 65 +VV ++G+ RPSRT + I +L + + D LL A L +L R Sbjct: 5 RVVGISGNITRPSRTRAFVDHIVHRLAVDAGASAQTFDIEDFGASLLPARRLDELAPEAR 64 Query: 66 QKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALAID 125 + I +AD+L+ SP ++GSY+GLFKH+FDL+ SL GKPV+LAATGG +RH+L ++ Sbjct: 65 YVVGQILAADILVVASPTFKGSYTGLFKHVFDLLDPSSLRGKPVILAATGGGERHSLMVE 124 Query: 126 HQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRA 172 HQLRPLF FF+AL +P +YA+ +F + + S A+ R+ V A Sbjct: 125 HQLRPLFGFFEALAMPTAIYASDKDFADGALASEAIHARVGRAVGEA 171 >AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 200 Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 109/178 (61%) Query: 1 MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60 M R + V+ ++GS ++PSRT ++ I A + + ++ + + L+ A L A QL Sbjct: 1 MRRTMNVLGISGSVKQPSRTARVVSDILASIERRASVSVDTIDLAVAAPILFRALRADQL 60 Query: 61 PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120 + R+ I A+E ADVL+ GSPVYR SY+G KHLFDLV +L GK V+LAATGG+ H Sbjct: 61 DEAGRRIIDAVEIADVLVVGSPVYRASYTGALKHLFDLVDFRALQGKRVVLAATGGTPLH 120 Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQA 178 L ++HQ RPLF FF A+T+P VYA +F T+ +P ++ RI V + +L A Sbjct: 121 GLMLEHQFRPLFGFFGAVTVPTTVYAVEADFTGYTLSNPEVEARIERAVAELIDLLPA 178 >mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti Length = 186 Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 1/187 (0%) Query: 1 MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60 MS P VV +G+ RPS+T + + + + + D+ L +A L Sbjct: 1 MSNP-TVVGFSGNITRPSKTRAFVELVTRDIAARHGLSAVTYDIEDVGPSLGTARWARDL 59 Query: 61 PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120 + +A I +ADVL+ GSP Y+GSY+GLFKH FDL+ +L GKP++L ATGG +RH Sbjct: 60 DSQAQPILAQILAADVLVVGSPTYKGSYTGLFKHFFDLIDPAALRGKPIVLTATGGGERH 119 Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA 180 AL ++HQLRPLF FF+A LP VYA +F + + S A+ +R A V VL + Sbjct: 120 ALIVEHQLRPLFGFFEAFALPTAVYATDKDFTDGVLRSEAILKRAAQAVDEVGFVLANRS 179 Query: 181 ATPVQAH 187 A + A Sbjct: 180 AGRIAAE 186 >Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium glutamicum Length = 165 Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 64/93 (68%), Gaps = 3/93 (3%) Query: 62 DPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHA 121 D +Q++A +D LIA +PV+ SYSG+FK FD++ ++++G P ++AA+ G+ RH+ Sbjct: 7 DAAKQRLA---ESDGLIAVTPVFTASYSGIFKMFFDVLDPKTIVGLPTIIAASAGTARHS 63 Query: 122 LAIDHQLRPLFAFFQALTLPLGVYANALEFDNE 154 L +DH +RPLF + +A+ +P GV+A +F E Sbjct: 64 LVLDHAIRPLFTYLRAVVVPTGVFAATEDFGTE 96 >ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O157:H7 EDL933 Length = 191 Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 8/165 (4%) Query: 5 LQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQLPDPV 64 ++V+ +AG R PSR+ LL +L L + L + A + L A+ P Sbjct: 1 MRVITLAGXPRFPSRSSSLLEYAREKLNG-LDVEVYHWNLQNFAAEDLL---YARFDSPA 56 Query: 65 RQKIAA-IESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALA 123 ++ AD LI +PVY+ +YSG K L DL+P+ +L GK VL ATGG+ H LA Sbjct: 57 LHTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLA 116 Query: 124 IDHQLRPLFAFFQALTLPLGVYAN---ALEFDNETIISPALQERI 165 +D+ L+P+ + +A + GV+A+ +++ ++ +P LQ R+ Sbjct: 117 VDYALKPVLSALKAQEILHGVFADDSQVIDYHHKPQFTPNLQTRL 161 >RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanacearum Length = 214 Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 27/188 (14%) Query: 5 LQVVIVAGSGRRPSRTLGLLHAIAAQL------GQHLAIRTEVVALSDLAGQLLSATEL- 57 + ++ ++GS PSR+ LL + AQL HL +R L A L Sbjct: 1 MPILTISGSPSAPSRSARLLGHVRAQLERAGESADHLDLRA------------LPADALL 48 Query: 58 -AQLPDP-VRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATG 115 AQ P + + +A + +A V+I +PVY+ +YSGL K DL+PQ L K VL ATG Sbjct: 49 GAQTAHPAIAEALARVAAAGVVILATPVYQAAYSGLLKTFLDLLPQSGLRDKVVLPIATG 108 Query: 116 GSDRHALAIDHQLRPLFAFFQALTLPLGVYANALEF---DNETIISPALQERIALTVQRA 172 GS H LAID+ LRP+ + A + G++A + D+ + PALQ+R+ ++R Sbjct: 109 GSLAHTLAIDYALRPVLSSLAARVILPGIFAADAQIGAADDGFAVDPALQQRLDDGIER- 167 Query: 173 LPVLQAVA 180 V QA+A Sbjct: 168 --VHQAIA 173 >YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis Length = 193 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 13/148 (8%) Query: 5 LQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEV----VALSDL-AGQLLSATELAQ 59 ++V+ +AGS R PSR+ LL+ L QH + V L D A LL A Sbjct: 1 MRVISLAGSPRTPSRSAALLN-----LSQHWLQQQNVEVIPYTLHDFQADDLLRAN--FN 53 Query: 60 LPDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDR 119 PD V +A + +AD L+ +P+Y+ S+SG K L DL+P+ +L K VL ATGGS Sbjct: 54 SPD-VSAFVAQLATADGLLIATPIYKASFSGALKTLLDLLPERALDHKVVLPLATGGSIG 112 Query: 120 HALAIDHQLRPLFAFFQALTLPLGVYAN 147 H LA+D+ L+P+ +A + GV+ + Sbjct: 113 HMLAVDYALKPVLTALKAQEVLHGVFVD 140 >ECs1020 [R] COG0431 Predicted flavoprotein Ecs Escherichia coli O157:H7 Length = 191 Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 63/98 (64%), Gaps = 3/98 (3%) Query: 71 IESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALAIDHQLRP 130 ++ AD LI +PVY+ +YSG K L DL+P+ +L GK VL ATGG+ H LA+D+ L+P Sbjct: 64 LQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYALKP 123 Query: 131 LFAFFQALTLPLGVYAN---ALEFDNETIISPALQERI 165 + + +A + GV+A+ +++ ++ +P LQ R+ Sbjct: 124 VLSALKAQEILHGVFADDSQVIDYHHKPQFTPNLQTRL 161 >BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans Length = 178 Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 5/169 (2%) Query: 6 QVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQLPDPVR 65 +VV + GS SRT L + L + + E + + DL + L +P++ Sbjct: 3 KVVSIVGSPAITSRTSILTRYVEKAL-REAGVDVETIYVRDLPPEDLLHVNFQS--EPLK 59 Query: 66 QKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALAID 125 + + + +AD +I SPVY+ SY+G+ K DL+PQ+ L K VL +GG+ H LAID Sbjct: 60 RTHSMVAAADGVIVASPVYKASYTGILKTYLDLLPQDGLRNKAVLPLMSGGTFGHLLAID 119 Query: 126 HQLRPLFAFFQALTLPLGVYA--NALEFDNETIISPALQERIALTVQRA 172 + ++P+ A + GVYA LE+ ++ + + E I L + +A Sbjct: 120 YGMKPVLNSLGARHILGGVYALDTQLEWQDKDAGTFRIAEEIKLRLDKA 168