BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0021.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5224 Non COG 303 3e-82 AGpA775 [E] COG0410 ABC-type branched-chain amino acid transport... 301 1e-81 APE1301 [E] COG0410 ABC-type branched-chain amino acid transport... 199 5e-51 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 196 3e-50 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 191 1e-48 RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport... 191 1e-48 STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 191 1e-48 APE2526 [E] COG0410 ABC-type branched-chain amino acid transport... 191 2e-48 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 189 6e-48 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 189 6e-48 >mlr5224 Non COG Length = 268 Score = 303 bits (775), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/242 (63%), Positives = 185/242 (76%) Query: 5 LLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQRGQVR 64 +L ++ I Y A+ AL VS E++ GEI ALLGANGAGK+TTLKA SNLL A+RGQV Sbjct: 7 ILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPAERGQVN 66 Query: 65 AGHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLRAA 124 AG I Y G +V+R P +LVR GL VLEGRHCF SLTVEENL+ G RR + Sbjct: 67 AGTICYDGADVSRRKPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRRAEINQD 126 Query: 125 LERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADI 184 LERIYA+FP+L ++RR+L+GL SGGEQQM AIGRAL+SRPRLLVLDEPSMGLAP +V DI Sbjct: 127 LERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPLIVQDI 186 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADIQSFYF 244 F L +LNRE G+++LVAEQNSAVAL+YA ATVLE+G SVLS A LR+R D+++FY Sbjct: 187 FQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQREDVRAFYL 246 Query: 245 GE 246 G+ Sbjct: 247 GQ 248 >AGpA775 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 282 Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 156/250 (62%), Positives = 185/250 (74%) Query: 5 LLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQRGQVR 64 LL +E + Y A+ AL V+L + GEI A+LGANGAGK+TTLKA SNLL A+RGQV Sbjct: 30 LLTVEGLHATYNHAITALHGVTLSLGRGEILAILGANGAGKTTTLKAVSNLLPAERGQVV 89 Query: 65 AGHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLRAA 124 AGHIL+ GR V +PA LVR GL QVLEGRHCF +LTVEENL++G R + Sbjct: 90 AGHILFDGRAVTHETPARLVRLGLVQVLEGRHCFKALTVEENLVSGGLGRSASRAEIAVD 149 Query: 125 LERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADI 184 LE+IY FP+L ++RR L+GL SGGEQQM AIGRAL+SRPRLLVLDEPSMGLAP+VV DI Sbjct: 150 LEKIYTHFPRLKEKRRVLSGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPRVVQDI 209 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADIQSFYF 244 F L LNREEG+++LVAEQNSAVAL YA RA +LE+G SVLS A LR R D+++FY Sbjct: 210 FRTLKHLNREEGLSILVAEQNSAVALNYADRAVILENGVSVLSGTAAELRARDDVKAFYL 269 Query: 245 GEGRVLQAAA 254 GE AAA Sbjct: 270 GEKPSASAAA 279 >APE1301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ape Aeropyrum pernix Length = 248 Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 15 YQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQRGQVRAGHILYQGRE 74 Y +L ++ +SL V+ G I L+G NGAGK+T LKA S ++ +RG+V G I +G + Sbjct: 2 YHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGED 61 Query: 75 VARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLRAALERIYAFFPQ 134 + P E+ R+G+ V+EGR F LT EENL++ A R +R+ L ++FP+ Sbjct: 62 ITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVL----SYFPR 117 Query: 135 LHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADIFAQLSRLNRE 194 L +R AG SGGEQQMLAI AL+ RP+LL+LDEPS+GLAPK+ + I+A + L+RE Sbjct: 118 LKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHRE 177 Query: 195 EGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADIQSFYFGEGR 248 EG+ +L+AEQN+ AL+ + V+E+GR VL A LR D+ FY G G+ Sbjct: 178 EGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDKDVAEFYLGMGK 231 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 159/242 (65%), Gaps = 10/242 (4%) Query: 5 LLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQRGQVR 64 +L+I+ ++V Y G + AL++++L +Q GE+ L+GANGAGKSTTL+A S ++ + GQ Sbjct: 32 ILEIQELDVNY-GGIQALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIVTPKNGQ-- 88 Query: 65 AGHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHF-TRRTVLRA 123 I+Y GR + R P E+V+ G+A EGR A TV +NLL G A+ + +T ++A Sbjct: 89 ---IIYSGRNITRRLPHEVVKFGIAHCPEGRRVLAKQTVLDNLLLG--AYIRSNQTEIKA 143 Query: 124 ALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVAD 183 +++ + FP+L QR+ LAG SGGEQQMLAI RAL+SRP+LL+LDEPS+GLAP +V + Sbjct: 144 DIKQQFELFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVRE 203 Query: 184 IFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADIQSFY 243 IF+ + L R GV +L+ EQN+ +ALQ A R VLE G LS A L ++ Y Sbjct: 204 IFSIIENL-RATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDERVKKAY 262 Query: 244 FG 245 G Sbjct: 263 LG 264 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 10/246 (4%) Query: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQR 60 MS +L+++++ V Y GA+ A++ + L+V G+I L+GANGAGK+TTL A + L+ AQ+ Sbjct: 1 MSDIVLEVQSLHV-YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 59 Query: 61 GQVRAGHILYQGREVARSSPAELV-RQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRT 119 G+ I++ G+++ + PA ++ R G+A V EGR F LTV ENL+ G + Sbjct: 60 GK-----IIFNGQDIT-NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG 113 Query: 120 VLRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPK 179 + R LE I++ FP+L +R + L G SGGEQQMLAIGRAL+SRP+LL++DEPS+GLAP Sbjct: 114 IKRD-LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 172 Query: 180 VVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADI 239 +V+++F + ++N +EG +L+ EQN+ AL+ AH VLE G+ VL +A L + + Sbjct: 173 LVSEVFEVIQKIN-QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV 231 Query: 240 QSFYFG 245 + Y G Sbjct: 232 RKAYLG 237 >RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 241 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 159/243 (65%), Gaps = 8/243 (3%) Query: 5 LLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQRGQVR 64 LL+++ +EV Y G + A++ + + AGEI +L+GANGAGKSTTL A S L+ +G+VR Sbjct: 4 LLEVKGLEVSY-GHIAAVKGIDFALNAGEITSLVGANGAGKSTTLLALSGLIPKSQGEVR 62 Query: 65 AGHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTR--RTVLR 122 G IL++G +V + S + V +G+ QV EGR ++TV ENL G +TR R+ + Sbjct: 63 -GQILFEGADVTQWSAHKRVERGIVQVAEGRATLTTMTVRENLELG---AYTRKDRSQIA 118 Query: 123 AALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVA 182 + LER++ FP+L +R +AG SGGEQQMLAIGRAL++RPR+L+LDEPSMGLAP +V Sbjct: 119 SDLERVFHLFPRLKERIDGMAGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQ 178 Query: 183 DIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERADIQSF 242 +IF L +N EG+ + + EQN AL+ A R VLE G+ VL+D + L + Sbjct: 179 EIFRILRTIN-AEGLTIFLVEQNVRQALKIAQRGYVLETGQIVLADSGQRLLGNPRVLEA 237 Query: 243 YFG 245 Y G Sbjct: 238 YLG 240 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 152/247 (61%), Gaps = 13/247 (5%) Query: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQR 60 M +L E + Y G + AL +VSL + GEI L+GANGAGK+T LL Sbjct: 1 MEKTMLTFEKVSAHY-GKIQALHDVSLHINQGEIVTLIGANGAGKTT-------LLGTLC 52 Query: 61 GQVRA--GHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRR 118 G RA G +++ G+++ A+++R+ +A V EGR F+ +TVEENL G F R Sbjct: 53 GDPRASSGRVVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAER 110 Query: 119 TVLRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAP 178 + ++ +Y FP+LH+RR AG SGGEQQMLAIGRAL+S+PRLL+LDEPS+GLAP Sbjct: 111 DRFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170 Query: 179 KVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERAD 238 ++ IF + +L RE+G+ + + EQN+ AL+ A R VLE+G VLSD AL Sbjct: 171 IIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA 229 Query: 239 IQSFYFG 245 ++S Y G Sbjct: 230 VRSAYLG 236 >APE2526 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ape Aeropyrum pernix Length = 240 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/247 (47%), Positives = 151/247 (61%), Gaps = 11/247 (4%) Query: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQR 60 M+ PLL++++I+V Y G AL VSL V GEI ALLG NGAGK+TTL S LL Sbjct: 2 MAEPLLEVKSIDV-YYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLL---- 56 Query: 61 GQVRAGHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTV 120 + R G I++QGR++ + V +G++ V EGR F LTV ENL A TRR Sbjct: 57 -KPRNGSIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRV---AASTRRAK 112 Query: 121 --LRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAP 178 + +LE++Y FP L RR LAG SGGEQQMLAI RALI RP LL++DEPS+GLAP Sbjct: 113 EHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAP 172 Query: 179 KVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERAD 238 K+ D+ SRL E GV +L+ EQN ++L+ A R V+E GR VL + L Sbjct: 173 KLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDPR 232 Query: 239 IQSFYFG 245 I++ Y G Sbjct: 233 IKAAYLG 239 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 13/247 (5%) Query: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQR 60 M +L + + Y G + AL EVSL + GEI L+GANGAGK+T LL Sbjct: 5 MEKVMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTT-------LLGTLC 56 Query: 61 GQVRA--GHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRR 118 G RA G I++ +++ A+++R+ +A V EGR F+ +TVEENL G F R Sbjct: 57 GDPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAER 114 Query: 119 TVLRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAP 178 + ++ +Y FP+LH+RR AG SGGEQQMLAIGRAL+S PRLL+LDEPS+GLAP Sbjct: 115 DQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAP 174 Query: 179 KVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERAD 238 ++ IF + +L RE+G+ + + EQN+ AL+ A R VLE+G VLSD AL Sbjct: 175 IIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA 233 Query: 239 IQSFYFG 245 ++S Y G Sbjct: 234 VRSAYLG 240 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 13/247 (5%) Query: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAASNLLAAQR 60 M +L + + Y G + AL EVSL + GEI L+GANGAGK+T LL Sbjct: 5 MEKVMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTT-------LLGTLC 56 Query: 61 GQVRA--GHILYQGREVARSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRR 118 G RA G I++ +++ A+++R+ +A V EGR F+ +TVEENL G F R Sbjct: 57 GDPRATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAER 114 Query: 119 TVLRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAP 178 + ++ +Y FP+LH+RR AG SGGEQQMLAIGRAL+S PRLL+LDEPS+GLAP Sbjct: 115 DQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAP 174 Query: 179 KVVADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDQARALRERAD 238 ++ IF + +L RE+G+ + + EQN+ AL+ A R VLE+G VLSD AL Sbjct: 175 IIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA 233 Query: 239 IQSFYFG 245 ++S Y G Sbjct: 234 VRSAYLG 240