BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0011.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3050 [S] COG5477 Predicted small integral membrane protein Rs...   123   8e-29
msl0703 Non COG                                                        87   9e-18
AGl1911 [S] COG5477 Predicted small integral membrane protein At...    80   2e-15
SMc02515 [S] COG5477 Predicted small integral membrane protein S...    76   2e-14

>RSc3050 [S] COG5477 Predicted small integral membrane protein Rso
          Ralstonia solanacearum
          Length = 93

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 5  LSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYI 64
           SWM+WTP VAIFF C+ LML GMTVWE+  PT+ERKGFLP+ TTRGDRLFIGLLTAAYI
Sbjct: 2  FSWMAWTPEVAIFFGCIALMLAGMTVWEVARPTVERKGFLPIATTRGDRLFIGLLTAAYI 61

Query: 65 NLAWVGLTDKDQ--WYAVALGFVALVLIMRKG 94
          NLAWVGL  +D   W         L+LIM +G
Sbjct: 62 NLAWVGLASEDSGAWSGFIASMAVLLLIMWRG 93


>msl0703 Non COG
          Length = 97

 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 1  MGNALSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLL 59
          M   LSWM+WT P A FF  ++L+L GM  WE  SP    R G L   TTRGDRLF+ LL
Sbjct: 3  MNFDLSWMAWTWPTAAFFATILLLLCGMAAWEYASPGGNPRVGILRFETTRGDRLFLSLL 62

Query: 60 TAAYINLAWVGLTDKDQWYAVALGFVALVLIMR 92
           +AYI+LAW+GL   + W+A+AL  V  + + R
Sbjct: 63 GSAYIHLAWLGLVGSNLWWALALSVVYAIGVFR 95


>AGl1911 [S] COG5477 Predicted small integral membrane protein Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 99

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 5  LSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLLTAAY 63
           +WM+WT   A FF  + ++LVGM VWE  SP    R G L   TTRGDRLFI LL +A+
Sbjct: 9  FTWMAWTWQTAAFFAAIAVLLVGMWVWERLSPGGNPRFGLLRFETTRGDRLFISLLGSAF 68

Query: 64 INLAWVGLTDKDQWYAVALGFVALVLIMR 92
          I+LAW+GL   + W+A+AL  V  + + R
Sbjct: 69 IHLAWLGLVGPNLWWALALSLVYAIGVFR 97


>SMc02515 [S] COG5477 Predicted small integral membrane protein Sme
           Sinorhizobium meliloti
          Length = 139

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 7   WMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIE-RKGFLPMRTTRGDRLFIGLLTAAYIN 65
           WM+W+ P A+FF+ +  +L  M VWE   P    R G L   TTRGDRLF+ LL +A+I+
Sbjct: 51  WMAWSFPTAMFFLTIFALLSLMAVWEYARPGGNPRVGILRFETTRGDRLFVSLLGSAFIH 110

Query: 66  LAWVGLTDKDQWYAVALGFVALVLIMR 92
           LAW+GL   + W+AVAL  +  V + R
Sbjct: 111 LAWLGLVGANLWWAVALSVIYAVGVFR 137